mRNA_C-tenellus_contig8398.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8398.4.1
Unique NamemRNA_C-tenellus_contig8398.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8398.4.1 vs. uniprot
Match: D7FMH7_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.490e-14
Identity = 31/42 (73.81%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:   13 CLQVLALLLYPLSWAHVYIPILPESLMGVLGAPLPFLVGVHR 138
            C +VL+L+LYPLSW+HVYIP+LPE+L+GVL AP+PFL+GVHR
Sbjct:  242 CAEVLSLVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHR 283
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BLAST of mRNA_C-tenellus_contig8398.4.1 vs. uniprot
Match: A0A6H5JMA5_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA5_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.130e-13
Identity = 30/39 (76.92%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:   22 VLALLLYPLSWAHVYIPILPESLMGVLGAPLPFLVGVHR 138
            VL L+LYPLSW+HVYIP+LPE+L+GVL AP+PFL+GVHR
Sbjct:  443 VLTLVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHR 481
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BLAST of mRNA_C-tenellus_contig8398.4.1 vs. uniprot
Match: A0A835ZGT0_9STRA (UDENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.440e-12
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   19 QVLALLLYPLSWAHVYIPILPESLMGVLGAPLPFLVGVH 135
            +VL  LLYPL W HVYIP+LPE LMGVLGAP+PF+VGVH
Sbjct:  293 EVLTTLLYPLCWTHVYIPVLPEPLMGVLGAPMPFIVGVH 331
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BLAST of mRNA_C-tenellus_contig8398.4.1 vs. uniprot
Match: A0A7S1SQR6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SQR6_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 2.680e-11
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   19 QVLALLLYPLSWAHVYIPILPESLMGVLGAPLPFLVGVHRR 141
            ++L LLLYPL WAHVYIP++P +L+G + AP+PFL+G+H R
Sbjct:    7 EILRLLLYPLQWAHVYIPVVPYTLVGAVEAPMPFLMGLHSR 47
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BLAST of mRNA_C-tenellus_contig8398.4.1 vs. uniprot
Match: S4RUT0_PETMA (UDENN domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RUT0_PETMA)

HSP 1 Score: 61.6 bits (148), Expect = 3.730e-10
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   13 CLQVLALLLYPLSWAHVYIPILPESLMGVLGAPLPFLVGVH 135
            C+  LALLLYP+SW HVYIP+LP  L+    AP+PFL+GVH
Sbjct:  187 CIHALALLLYPMSWQHVYIPLLPPHLLEYCSAPMPFLIGVH 227
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BLAST of mRNA_C-tenellus_contig8398.4.1 vs. uniprot
Match: S4RUS8_PETMA (UDENN domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RUS8_PETMA)

HSP 1 Score: 61.6 bits (148), Expect = 4.340e-10
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   13 CLQVLALLLYPLSWAHVYIPILPESLMGVLGAPLPFLVGVH 135
            C+  LALLLYP+SW HVYIP+LP  L+    AP+PFL+GVH
Sbjct:  203 CIHALALLLYPMSWQHVYIPLLPPHLLEYCSAPMPFLIGVH 243
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BLAST of mRNA_C-tenellus_contig8398.4.1 vs. uniprot
Match: UPI0014042311 (DENN domain-containing protein 1B-like isoform X1 n=4 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014042311)

HSP 1 Score: 61.6 bits (148), Expect = 7.470e-10
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   13 CLQVLALLLYPLSWAHVYIPILPESLMGVLGAPLPFLVGVH 135
            C+  LALLLYP+SW HVYIP+LP  L+    AP+PFL+GVH
Sbjct:  213 CIHALALLLYPMSWQHVYIPLLPPHLLEYCSAPMPFLIGVH 253
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BLAST of mRNA_C-tenellus_contig8398.4.1 vs. uniprot
Match: A0A1D1VB75_RAMVA (Uncharacterized protein n=2 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VB75_RAMVA)

HSP 1 Score: 60.1 bits (144), Expect = 2.610e-9
Identity = 24/41 (58.54%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   19 QVLALLLYPLSWAHVYIPILPESLMGVLGAPLPFLVGVHRR 141
            + LA LL+P +W HVY+PILPES++  L AP+PF++G+HRR
Sbjct:  314 ECLATLLFPFAWQHVYVPILPESMVSFLDAPVPFIMGLHRR 354
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BLAST of mRNA_C-tenellus_contig8398.4.1 vs. uniprot
Match: F1N1V1_BOVIN (DENN domain containing 2D n=51 Tax=Pecora TaxID=35500 RepID=F1N1V1_BOVIN)

HSP 1 Score: 59.3 bits (142), Expect = 4.870e-9
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   13 CLQVLALLLYPLSWAHVYIPILPESLMGVLGAPLPFLVGVHRR 141
            C+   A LLYP SWAH YIP++PESL+G +  P PF+VGV  R
Sbjct:  277 CIHATAALLYPFSWAHTYIPVVPESLLGTVCCPTPFMVGVQMR 319
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BLAST of mRNA_C-tenellus_contig8398.4.1 vs. uniprot
Match: A0A836APF9_SHEEP (UDENN domain-containing protein n=2 Tax=Ovis aries TaxID=9940 RepID=A0A836APF9_SHEEP)

HSP 1 Score: 59.3 bits (142), Expect = 4.870e-9
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   13 CLQVLALLLYPLSWAHVYIPILPESLMGVLGAPLPFLVGVHRR 141
            C+   A LLYP SWAH YIP++PESL+G +  P PF+VGV  R
Sbjct:  277 CIHATAALLYPFSWAHTYIPVVPESLLGTVCCPTPFMVGVQMR 319
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8398.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMH7_ECTSI2.490e-1473.81UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JMA5_9PHAE4.130e-1376.92UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZGT0_9STRA1.440e-1276.92UDENN domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S1SQR6_9CHLO2.680e-1160.98Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
S4RUT0_PETMA3.730e-1063.41UDENN domain-containing protein n=1 Tax=Petromyzon... [more]
S4RUS8_PETMA4.340e-1063.41UDENN domain-containing protein n=1 Tax=Petromyzon... [more]
UPI00140423117.470e-1063.41DENN domain-containing protein 1B-like isoform X1 ... [more]
A0A1D1VB75_RAMVA2.610e-958.54Uncharacterized protein n=2 Tax=Ramazzottius varie... [more]
F1N1V1_BOVIN4.870e-958.14DENN domain containing 2D n=51 Tax=Pecora TaxID=35... [more]
A0A836APF9_SHEEP4.870e-958.14UDENN domain-containing protein n=2 Tax=Ovis aries... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8398contigC-tenellus_contig8398:4937..5077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMH7
PFAMsC1_2,DENN,dDENN,uDENN
Model size141
Max annot lvl2759|Eukaryota
KEGG koko:K20163
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.08e-15
EggNOG OGsKOG2127@1|root,KOG2127@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size141
COG categoryL
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790103.3939216-CDS-C-tenellus_contig8398:4936..50771680790103.3939216-CDS-C-tenellus_contig8398:4936..5077Choristocarpus tenellus KU2346CDSC-tenellus_contig8398 4937..5077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8398.4.1prot_C-tenellus_contig8398.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8398 4937..5077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8398.4.1

>prot_C-tenellus_contig8398.4.1 ID=prot_C-tenellus_contig8398.4.1|Name=mRNA_C-tenellus_contig8398.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=47bp
LCCLCLQVLALLLYPLSWAHVYIPILPESLMGVLGAPLPFLVGVHRR
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mRNA from alignment at C-tenellus_contig8398:4937..5077+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8398.4.1 ID=mRNA_C-tenellus_contig8398.4.1|Name=mRNA_C-tenellus_contig8398.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=141bp|location=Sequence derived from alignment at C-tenellus_contig8398:4937..5077+ (Choristocarpus tenellus KU2346)
CTATGCTGTTTGTGTCTACAGGTCCTTGCGCTGCTGCTCTATCCCCTCTC
CTGGGCTCATGTGTATATCCCCATTTTGCCGGAGTCTCTCATGGGTGTGC
TTGGGGCGCCCCTCCCGTTCCTGGTTGGAGTCCACAGGCGA
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Coding sequence (CDS) from alignment at C-tenellus_contig8398:4937..5077+

>mRNA_C-tenellus_contig8398.4.1 ID=mRNA_C-tenellus_contig8398.4.1|Name=mRNA_C-tenellus_contig8398.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=141bp|location=Sequence derived from alignment at C-tenellus_contig8398:4937..5077+ (Choristocarpus tenellus KU2346)
CTATGCTGTTTGTGTCTACAGGTCCTTGCGCTGCTGCTCTATCCCCTCTC
CTGGGCTCATGTGTATATCCCCATTTTGCCGGAGTCTCTCATGGGTGTGC
TTGGGGCGCCCCTCCCGTTCCTGGTTGGAGTCCACAGGCGA
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