mRNA_C-tenellus_contig8394.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8394.1.1
Unique NamemRNA_C-tenellus_contig8394.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8394.1.1 vs. uniprot
Match: D8LBC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBC6_ECTSI)

HSP 1 Score: 372 bits (956), Expect = 7.220e-125
Identity = 181/215 (84.19%), Postives = 197/215 (91.63%), Query Frame = 1 
Query:    1 ACNLFRLYNGKAAETELKTLSERGRNIQGNDLIRHNMIVFANGEGSLKVLPSLIDFISEARLNLVIYYLKNESIQEAYELIKDMEPSTPQEYILKGKMIDSVVNASVGQAMGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFYLLKQFEDVNIYLNSVKAYMYNDDDFNWNHGISLASTGNFKAAEEALLLIQNEKIKQEYCYISWLARC 645
            ACN+FRLYNGKAAETELK LS+RG N+Q NDLIRHN +VF+ G+ SLKVLP L+DFI EARLNLVIYYLK+E +QEAY+LIKD+EPSTPQEYILKG     VVNAS+GQA GSREHLKMAQQYFQLVGASASECDTIPGRQCMASCF+LLKQFEDVNIYLNSVKAYMYNDDDFNWNHG+SL STGNFKA+EEALLLI NEK+KQEYCYISWL RC
Sbjct:  218 ACNVFRLYNGKAAETELKALSDRGHNLQANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKG-----VVNASIGQATGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFFLLKQFEDVNIYLNSVKAYMYNDDDFNWNHGLSLGSTGNFKASEEALLLIANEKMKQEYCYISWLTRC 427
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BLAST of mRNA_C-tenellus_contig8394.1.1 vs. uniprot
Match: A0A836CHL9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL9_9STRA)

HSP 1 Score: 364 bits (935), Expect = 1.680e-121
Identity = 175/215 (81.40%), Postives = 200/215 (93.02%), Query Frame = 1 
Query:    1 ACNLFRLYNGKAAETELKTLSERGRNIQGNDLIRHNMIVFANGEGSLKVLPSLIDFISEARLNLVIYYLKNESIQEAYELIKDMEPSTPQEYILKGKMIDSVVNASVGQAMGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFYLLKQFEDVNIYLNSVKAYMYNDDDFNWNHGISLASTGNFKAAEEALLLIQNEKIKQEYCYISWLARC 645
            ACNLFRLYNGKAAETEL+ L+E+GR +Q NDL+RHNM+VF+ G+G+LKVLPSL+DFI EARLNLVIY L+N ++QEAY+LIKD+EPSTPQEYILKG     VVNA++GQA GSREHLKMAQQYFQLVGASASECDTIPGRQCMASCF+LLKQFEDVNIYLNSVKAYMYNDDDFNWNHG+SLASTGN+KAAEE+LLLIQ+E+ KQ+Y +ISWLARC
Sbjct:  232 ACNLFRLYNGKAAETELRVLAEQGRGLQSNDLVRHNMVVFSGGQGALKVLPSLVDFIVEARLNLVIYQLRNNNVQEAYDLIKDLEPSTPQEYILKG-----VVNATLGQANGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFFLLKQFEDVNIYLNSVKAYMYNDDDFNWNHGLSLASTGNYKAAEESLLLIQSERYKQDYVFISWLARC 441
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BLAST of mRNA_C-tenellus_contig8394.1.1 vs. uniprot
Match: A0A7S3NP57_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NP57_9STRA)

HSP 1 Score: 356 bits (914), Expect = 2.840e-117
Identity = 173/215 (80.47%), Postives = 195/215 (90.70%), Query Frame = 1 
Query:    1 ACNLFRLYNGKAAETELKTLSERGRNIQGNDLIRHNMIVFANGEGSLKVLPSLIDFISEARLNLVIYYLKNESIQEAYELIKDMEPSTPQEYILKGKMIDSVVNASVGQAMGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFYLLKQFEDVNIYLNSVKAYMYNDDDFNWNHGISLASTGNFKAAEEALLLIQNEKIKQEYCYISWLARC 645
            ACN FRLYNGKAAE ELK LS++GR +  N LIRHN IVFANGEG+L+VLP+L DFI EARLNLVIYYL+N+++QEAYELIKD+EPSTPQEYILKG     VVNA+VGQA+GSR+H+KMAQQ+FQLVG+SASECDTIPGRQCMASCF+LLKQFEDVNIYLNSVKAYMYNDDDFNWN+GISLA TGN+KAAEEA LL+QNE  K +YCYISWLARC
Sbjct:  319 ACNHFRLYNGKAAEAELKLLSDQGRALHTNHLIRHNRIVFANGEGALQVLPALSDFIPEARLNLVIYYLRNDAVQEAYELIKDLEPSTPQEYILKG-----VVNATVGQALGSRDHVKMAQQFFQLVGSSASECDTIPGRQCMASCFFLLKQFEDVNIYLNSVKAYMYNDDDFNWNYGISLAQTGNYKAAEEAFLLVQNETYKNDYCYISWLARC 528
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BLAST of mRNA_C-tenellus_contig8394.1.1 vs. uniprot
Match: A0A7S4E7C5_9STRA (Hypothetical protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=A0A7S4E7C5_9STRA)

HSP 1 Score: 348 bits (894), Expect = 2.130e-114
Identity = 167/215 (77.67%), Postives = 191/215 (88.84%), Query Frame = 1 
Query:    1 ACNLFRLYNGKAAETELKTLSERGRNIQGNDLIRHNMIVFANGEGSLKVLPSLIDFISEARLNLVIYYLKNESIQEAYELIKDMEPSTPQEYILKGKMIDSVVNASVGQAMGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFYLLKQFEDVNIYLNSVKAYMYNDDDFNWNHGISLASTGNFKAAEEALLLIQNEKIKQEYCYISWLARC 645
            ACN FRLYNGKAAE ELK L ++G  +  NDLIRHN +VF+ GEG+L+VLP L DF+ EARLNLVIY+L+++ +QEA+ELIKD+EPSTPQEYILKG     VVNASVGQA+GSREH+KMAQQ+FQLVGASASECDTIPGRQCMASCF+LLKQFEDVNIYLNS+KAYMY DDDFNWNHGISLA TGN+K AEEALLL+QNE+ K EYCY+SWLARC
Sbjct:  307 ACNHFRLYNGKAAEAELKVLQDQGHALGSNDLIRHNRVVFSQGEGALQVLPRLADFVPEARLNLVIYHLRHDGMQEAHELIKDVEPSTPQEYILKG-----VVNASVGQALGSREHVKMAQQFFQLVGASASECDTIPGRQCMASCFFLLKQFEDVNIYLNSIKAYMYGDDDFNWNHGISLAQTGNYKGAEEALLLVQNERYKAEYCYVSWLARC 516
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BLAST of mRNA_C-tenellus_contig8394.1.1 vs. uniprot
Match: A0A7S2RXW2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXW2_9STRA)

HSP 1 Score: 349 bits (896), Expect = 3.650e-114
Identity = 170/215 (79.07%), Postives = 191/215 (88.84%), Query Frame = 1 
Query:    1 ACNLFRLYNGKAAETELKTLSERGRNIQGNDLIRHNMIVFANGEGSLKVLPSLIDFISEARLNLVIYYLKNESIQEAYELIKDMEPSTPQEYILKGKMIDSVVNASVGQAMGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFYLLKQFEDVNIYLNSVKAYMYNDDDFNWNHGISLASTGNFKAAEEALLLIQNEKIKQEYCYISWLARC 645
            ACN FRLYNG+AAE ELK L++ G N+ GN+LIRHN +VF+ GEG+L+VLP L+D I EARLNLVIYYL++E IQEAYELIKD+EPSTP EYILK     +VVNASVGQ +GSREH+KMAQQ+FQLVG+SASECDTIPGRQCMAS F+LLKQFEDVNIYLNS+KAYMYNDDDFNWNHGIS A TGNFKAAEEALLL+QNEK K EYCYISWLARC
Sbjct:  354 ACNHFRLYNGRAAEAELKVLADLGHNLGGNNLIRHNQVVFSMGEGALQVLPPLVDVIPEARLNLVIYYLRHEGIQEAYELIKDLEPSTPSEYILK-----AVVNASVGQELGSREHIKMAQQFFQLVGSSASECDTIPGRQCMASMFFLLKQFEDVNIYLNSIKAYMYNDDDFNWNHGISQAQTGNFKAAEEALLLVQNEKYKAEYCYISWLARC 563
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BLAST of mRNA_C-tenellus_contig8394.1.1 vs. uniprot
Match: A0A7S2GLE2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLE2_9STRA)

HSP 1 Score: 347 bits (890), Expect = 6.120e-114
Identity = 168/215 (78.14%), Postives = 191/215 (88.84%), Query Frame = 1 
Query:    1 ACNLFRLYNGKAAETELKTLSERGRNIQGNDLIRHNMIVFANGEGSLKVLPSLIDFISEARLNLVIYYLKNESIQEAYELIKDMEPSTPQEYILKGKMIDSVVNASVGQAMGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFYLLKQFEDVNIYLNSVKAYMYNDDDFNWNHGISLASTGNFKAAEEALLLIQNEKIKQEYCYISWLARC 645
            ACN FRLYNG+AAE ELK L++ G N + NDLIRHNM+VF+ GEG+L+VLP L++FI EARLNLVIYYL+N  +Q+AYELIKD+EPSTPQ+YILKG     VVNA VGQ +GSREH+KMAQQ+FQLVGASA+ECDTIPGRQCMASCF+LL QFEDVNIYLNS+KAYMYNDDDFNWN+GISLA TGNFKAAEEALLLIQNEK K E C+ISWLARC
Sbjct:  293 ACNHFRLYNGRAAEAELKVLTDEGYNPESNDLIRHNMVVFSQGEGALQVLPQLVEFIPEARLNLVIYYLRNGGVQDAYELIKDIEPSTPQQYILKG-----VVNACVGQDIGSREHIKMAQQFFQLVGASAAECDTIPGRQCMASCFFLLNQFEDVNIYLNSIKAYMYNDDDFNWNYGISLAQTGNFKAAEEALLLIQNEKYKAEPCFISWLARC 502
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BLAST of mRNA_C-tenellus_contig8394.1.1 vs. uniprot
Match: A0A7S3H7X6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7X6_9STRA)

HSP 1 Score: 327 bits (839), Expect = 1.900e-108
Identity = 158/215 (73.49%), Postives = 189/215 (87.91%), Query Frame = 1 
Query:    1 ACNLFRLYNGKAAETELKTLSERGRNIQGNDLIRHNMIVFANGEGSLKVLPSLIDFISEARLNLVIYYLKNESIQEAYELIKDMEPSTPQEYILKGKMIDSVVNASVGQAMGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFYLLKQFEDVNIYLNSVKAYMYNDDDFNWNHGISLASTGNFKAAEEALLLIQNEKIKQEYCYISWLARC 645
            ACN FRLYNGKAAE ELK LS++G NIQGN+LIRHN++VF+NGE +L+VLP L+D I EARLNL+IYYL++ SI EA+EL+ D++P+TPQEYI+KG     VV+A++GQ+ G+REHLKMAQQ FQLVG SA ECDTIPGRQCMASC++L+KQFEDVNIYLNSVKAYMYNDDDFN+NHGI+LA+T N+K+AEEALLLI NE  K EY YISWLARC
Sbjct:  121 ACNHFRLYNGKAAEAELKFLSDKGVNIQGNELIRHNLVVFSNGEQALQVLPGLVDSIPEARLNLIIYYLRHGSINEAFELVSDLDPATPQEYIIKG-----VVHATLGQSTGNREHLKMAQQCFQLVGTSAHECDTIPGRQCMASCYFLMKQFEDVNIYLNSVKAYMYNDDDFNYNHGIALAATRNYKSAEEALLLIHNEAYKAEYVYISWLARC 330
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BLAST of mRNA_C-tenellus_contig8394.1.1 vs. uniprot
Match: A0A482SW85_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SW85_9ARCH)

HSP 1 Score: 321 bits (823), Expect = 9.200e-108
Identity = 153/215 (71.16%), Postives = 187/215 (86.98%), Query Frame = 1 
Query:    1 ACNLFRLYNGKAAETELKTLSERGRNIQGNDLIRHNMIVFANGEGSLKVLPSLIDFISEARLNLVIYYLKNESIQEAYELIKDMEPSTPQEYILKGKMIDSVVNASVGQAMGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFYLLKQFEDVNIYLNSVKAYMYNDDDFNWNHGISLASTGNFKAAEEALLLIQNEKIKQEYCYISWLARC 645
            ACN FRLYNGKAAE ELK LS++G  +Q N+LIRHN++VF+NG+ +L+VLPSLID I EARLNL+I+YL+  +I EAYELI++++P+TPQEYI+KG     VV+  +GQ+ G+REHLKMAQQ FQLVG SA ECDTIPGRQCMASC++L++QFEDVNIYLNS+KAYMYNDDDFN+NHGI+LA+T N+KAAEEALLLI NE+ K EYCYI WLARC
Sbjct:   34 ACNHFRLYNGKAAEAELKVLSDKGVALQSNELIRHNLVVFSNGDQALQVLPSLIDSIPEARLNLIIFYLRRGAINEAYELIREVDPATPQEYIIKG-----VVHTMIGQSTGNREHLKMAQQCFQLVGTSAHECDTIPGRQCMASCYFLMRQFEDVNIYLNSIKAYMYNDDDFNFNHGIALAATRNYKAAEEALLLIHNEQYKTEYCYIGWLARC 243
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BLAST of mRNA_C-tenellus_contig8394.1.1 vs. uniprot
Match: A0A812VCC2_SYMMI (TTC26 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VCC2_SYMMI)

HSP 1 Score: 323 bits (828), Expect = 1.700e-105
Identity = 154/215 (71.63%), Postives = 185/215 (86.05%), Query Frame = 1 
Query:    1 ACNLFRLYNGKAAETELKTLSERGRNIQGNDLIRHNMIVFANGEGSLKVLPSLIDFISEARLNLVIYYLKNESIQEAYELIKDMEPSTPQEYILKGKMIDSVVNASVGQAMGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFYLLKQFEDVNIYLNSVKAYMYNDDDFNWNHGISLASTGNFKAAEEALLLIQNEKIKQEYCYISWLARC 645
            ACN FRLYNGKAAE ELK L++RG N+QG +LIRHNM+VF+NG+ + ++LP L+D I EARLNLVIYYL++  +QEA++LI+D+EP+TPQEYILKG     VV+A +GQA GSREHLK+AQQ FQLVG SA ECDTIPGRQCMASCF+L+KQF+DV+IYLNS+KAYMYNDDDFNWN+ + LAST N+K AEEALLLI NEK K EY Y+SWLARC
Sbjct:  222 ACNHFRLYNGKAAEAELKVLADRGVNLQGIELIRHNMVVFSNGDQAQQILPGLVDVIPEARLNLVIYYLRHHQVQEAHDLIRDLEPATPQEYILKG-----VVHACIGQATGSREHLKVAQQCFQLVGTSAHECDTIPGRQCMASCFFLMKQFDDVSIYLNSIKAYMYNDDDFNWNYALCLASTRNYKGAEEALLLIHNEKYKSEYVYVSWLARC 431
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BLAST of mRNA_C-tenellus_contig8394.1.1 vs. uniprot
Match: A0A2R5G680_9STRA (Intraflagellar transport protein 56 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G680_9STRA)

HSP 1 Score: 321 bits (822), Expect = 1.900e-104
Identity = 155/214 (72.43%), Postives = 188/214 (87.85%), Query Frame = 1 
Query:    1 ACNLFRLYNGKAAETELKTLSERGRNIQGNDLIRHNMIVFANGEGSLKVLPSLIDFISEARLNLVIYYLKNESIQEAYELIKDMEPSTPQEYILKGKMIDSVVNASVGQAMGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFYLLKQFEDVNIYLNSVKAYMYNDDDFNWNHGISLASTGNFKAAEEALLLIQNEKIKQEYCYISWLAR 642
            ACN FRLYNGKAAE ELK L+E+G ++  NDLIRHN++VF NGE +LKVLP+L+DF+ EARLNLVIY+L+N+ I+EA+EL+KD+EP TPQEYILKG     VVNA+VGQA GSREHLKMAQQ+FQLVGASASECDTIPGRQCMASCF+LLKQFEDVNIYLNS+KAY+YNDDDFN+N+GISL +TG ++ AEE L L+Q+EKI+  + ++S LAR
Sbjct:  229 ACNHFRLYNGKAAEAELKALNEQGHSLHDNDLIRHNLVVFRNGENALKVLPALVDFLPEARLNLVIYHLRNDDIEEAFELMKDIEPGTPQEYILKG-----VVNAAVGQAKGSREHLKMAQQFFQLVGASASECDTIPGRQCMASCFFLLKQFEDVNIYLNSIKAYLYNDDDFNYNYGISLTNTGQYREAEETLQLVQDEKIRCSFEFLSHLAR 437
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8394.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBC6_ECTSI7.220e-12584.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CHL9_9STRA1.680e-12181.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3NP57_9STRA2.840e-11780.47Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4E7C5_9STRA2.130e-11477.67Hypothetical protein n=3 Tax=Pelagomonadales TaxID... [more]
A0A7S2RXW2_9STRA3.650e-11479.07Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2GLE2_9STRA6.120e-11478.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3H7X6_9STRA1.900e-10873.49Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482SW85_9ARCH9.200e-10871.16Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A812VCC2_SYMMI1.700e-10571.63TTC26 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A2R5G680_9STRA1.900e-10472.43Intraflagellar transport protein 56 n=1 Tax=Hondae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8394contigC-tenellus_contig8394:636..5912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBC6
Preferred nameTTC26
PFAMsANAPC3,TPR_19,TPR_8
Model size645
Max annot lvl2759|Eukaryota
KEGG koko:K19685
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0000904,GO:0001655,GO:0001822,GO:0002009,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007399,GO:0008150,GO:0008594,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032991,GO:0035239,GO:0035295,GO:0035720,GO:0035735,GO:0035845,GO:0036064,GO:0039022,GO:0039023,GO:0042073,GO:0042461,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0046530,GO:0046907,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060993,GO:0065007,GO:0070925,GO:0071840,GO:0072001,GO:0072073,GO:0072114,GO:0072176,GO:0072178,GO:0097542,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons7
Evalue1.18e-125
EggNOG OGsKOG3785@1|root,KOG3785@2759|Eukaryota
Descriptionintraciliary transport
Cds size645
COG categoryS
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8394.1.1prot_C-tenellus_contig8394.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8394 636..5912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790103.1655643-CDS-C-tenellus_contig8394:635..7191680790103.1655643-CDS-C-tenellus_contig8394:635..719Choristocarpus tenellus KU2346CDSC-tenellus_contig8394 636..719 +
1680790103.1812096-CDS-C-tenellus_contig8394:1375..14831680790103.1812096-CDS-C-tenellus_contig8394:1375..1483Choristocarpus tenellus KU2346CDSC-tenellus_contig8394 1376..1483 +
1680790103.194693-CDS-C-tenellus_contig8394:3236..33451680790103.194693-CDS-C-tenellus_contig8394:3236..3345Choristocarpus tenellus KU2346CDSC-tenellus_contig8394 3237..3345 +
1680790103.2056658-CDS-C-tenellus_contig8394:3667..37411680790103.2056658-CDS-C-tenellus_contig8394:3667..3741Choristocarpus tenellus KU2346CDSC-tenellus_contig8394 3668..3741 +
1680790103.2202916-CDS-C-tenellus_contig8394:4387..45041680790103.2202916-CDS-C-tenellus_contig8394:4387..4504Choristocarpus tenellus KU2346CDSC-tenellus_contig8394 4388..4504 +
1680790103.233338-CDS-C-tenellus_contig8394:5249..53211680790103.233338-CDS-C-tenellus_contig8394:5249..5321Choristocarpus tenellus KU2346CDSC-tenellus_contig8394 5250..5321 +
1680790103.244937-CDS-C-tenellus_contig8394:5831..59121680790103.244937-CDS-C-tenellus_contig8394:5831..5912Choristocarpus tenellus KU2346CDSC-tenellus_contig8394 5832..5912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8394.1.1

>prot_C-tenellus_contig8394.1.1 ID=prot_C-tenellus_contig8394.1.1|Name=mRNA_C-tenellus_contig8394.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=215bp
ACNLFRLYNGKAAETELKTLSERGRNIQGNDLIRHNMIVFANGEGSLKVL
PSLIDFISEARLNLVIYYLKNESIQEAYELIKDMEPSTPQEYILKGKMID
SVVNASVGQAMGSREHLKMAQQYFQLVGASASECDTIPGRQCMASCFYLL
KQFEDVNIYLNSVKAYMYNDDDFNWNHGISLASTGNFKAAEEALLLIQNE
KIKQEYCYISWLARC
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mRNA from alignment at C-tenellus_contig8394:636..5912+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8394.1.1 ID=mRNA_C-tenellus_contig8394.1.1|Name=mRNA_C-tenellus_contig8394.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5277bp|location=Sequence derived from alignment at C-tenellus_contig8394:636..5912+ (Choristocarpus tenellus KU2346)
GCATGCAATCTATTCCGACTCTACAATGGGAAGGCAGCAGAGACTGAGCT
CAAAACTCTGTCAGAACGTGGGCGTAATATTCAGGTGTGGTACGCCTGCA
CTACTTTCTTGACAAGCAGTGAGATGTTTCCAGAACTGACTTTGTGCTGT
TCAACCCTATACTGAAATTACTCAGACAATTGACCCTGTTGAACTCTTCT
GATGGCACCACTTGCTACATATGGCATGCTTTCTATACAACCCTCTTGGA
ATGAGCCTGAGGCCCTTCCAAGCACTAGAGTCTAAGATCAGGATGGTCTA
CTGGAGTGTATGCCTATGACACCCTGAAGGAGAACAAAGCTTGTGGTAAT
TCAGATTAGAAGAAGCATGCTCCGCAAATCCTTAGAACCCTTATTGTCCC
ATGGATTTTCCTACGCGGTGAGATGGATATTTTTGCACCCACTACCTCTC
CTCTGCTTTAAGAATCACCCTCCTTTTGCCTTGGTGAACTTTGCTATGCT
CAACGACATGTAGAGAGCAAGTCATATTCTACACAGGTGTTCTTCCTGTA
CTACCTTGTCCTCTTTTTGTGTTCATGTACACTGGTACTTTGTGCTCTGT
GTACTCCATTCACCGCATTCCAAACTCCAGCTCATCTTCTCCCCAGCAGG
GTTCACACCTCGTGCAAGACTCATGATTATGTTAGAAATGTATACCCCCT
CACAATTTGCGCCCACAACCCGCTTTTTCCCTACCCTCAGGGAAATGATT
TGATTCGTCACAACATGATCGTATTTGCCAATGGAGAAGGATCACTCAAG
GTCCTGCCCTCCCTCATTGATTTCATCTCCGAGGCCAGGCTCAATCTCGT
GAGTTGGGTCAACTCTTTTACCCTTGTATTGCAGTGTGGGTAGTCAAAAC
AAACTCTCTCTCTCTTTAGATATGTTTGGAATTGACAAGGATTGGTTTAT
ATATATATTGCCAACTTTGGCCAGCAATAGGTATCTATCCAAGAATAATG
CCCGTTTTGGTTGCTATACTTCTCTTGACTTACATTGCATGGGAGAAAAT
TGGGGGAATATGTGACTGGCATTGATAAGTCGTCAACATTCCTTGCTCAA
GCAGTTACAGAGTGAGCCTGCATATGCCTTTATAAACACCAGGGACGGAG
GGTGGGGCTGGCTTGCACTTGAAACTGGATGAAAAAGTCAGGCAGAAATA
ATAATTGGCTTACCTCTGATAGGTTCATATTATGGGTCATTGTCTTATAG
AGCAGGAGACATAAAGGAAGAACAGGGCAAATTAACAAGAACATATGATT
TGTTTTCTAAGATTGGGTTGAAGATAAAATTAGGGGAGCTTTGTGGTGAA
ACTTATTTTGACCACCATCCACTTTGTGTAATGTGCAACGCATACTTGAC
TAACTAAAGAGAGCGACAGTATCTTAGAGGGTATGAGTATTGCTCTGTTT
GTCCATTTGGGGCTTGACTTCCCATGGGGTATTATTATGACATTTTCCTA
CTCCATAATGTTTCGGAGTAGGTAAAATGTATACATCATGAAAAGGTGTG
TCTGGAGTAAGGATATTGACACTTCCTAACAAACACAATAGCCAAAATTA
CATCCGAATCGCAACATTGGATTTTGGTCCCCAAATGGACGAGGTTCTAC
ACTCTAATATTCTTTGGCTCAGAAATTGTTCCAGTGCAATACCTAAAATC
TGACCAGGACAGTACATGAGAGTATGGATGTACCGCTGGTCCATCAATGA
AGCTCAGAGTATTGTGCAAGATTAGTAATAGTGCCTTGATCAAACAGTTG
GATGCCAACATCTCCACAATAGTCAGAAGGCAAAAGTTCGAATCCTGACC
GAGGCAAACCGCTTTCTCAACCTCCCATTACTCTTGAGTTATTTTAGGGG
CAATGTTCAAGGCAACAGTACTTCCAGAATCCAAGATCTAGGCTGTTGAT
GGCGAATGTAGGTATTCACCTTCTAGATCAGTTCATTTGCCTTAACTATG
CTGGTTAGGACTCAATTAATAGTTCTTTTGCTGTCTAATCCTCACTTAAG
GTAGGACGGTATTGTCAGGAGAAGTTTTTTCTGTGGTCAACTTGGAAGAT
CCATGCTCATGATGTGGGTCTACCTACAACCCAAGGGGGTAAGGGTTGGT
TGTTGCTGAAATTGCATGACTACAAGAGATGGAACAAACGTGATCAAAGG
TATTGCCTCAGAGCACGGGGTAGGGTGTCATCTTTTGCTGGTCAACAACG
AAATTCGAGGCTGAAGATTGCTTGATGCAGCTGTACCAAGAAAGAAAAAA
ACTCTCACTGCCCGCTAGCATACCCAAACCATGGTCTTATTCCCGTCAAG
TGTTGGCCTGTAATATTTCCTACGTTTTCTTATATCCCCTTACACTGTCT
ACACTCCACAGCTTGGTTTTGCCAAGCTGTCCAGTTTTCCCCATTGCAGC
AGTAGTTTGGTATGTATTGTACAACTTCAGTGCAGTACCATGATACTTCA
CAATTACACACTTGAAATGATCTCAAGGTGAAGATTGACTGGAATAGATG
GACATACCTGCTTACCATCCTAGGTAAACCTTCCCTCGCTGTGCTTCAAA
GGTGATCTACTACCTAAAGAACGAGAGCATCCAGGAAGCATACGAGCTGA
TCAAGGACATGGAGCCATCTACCCCACAGGAGTACATCTTGAAAGGCAAG
ATGATTGACAGTTCAGAGAGGACAATGGTGGTGGCTGTTGGAGTATTTTC
TTGTAATAATGTGATATGGTGAAATCATGCCCTTGCTCTGCCATGTAGCA
CAGCTTTGAAACTTAAGGCAAGAGTTCTCAGTCAGAGTACTGTAAAACCT
CAATCATCCACACGCCAACATTATGGTCTGCAGTTTATGTGCCTCACTTC
AAAAAATTGTTGATTTGTTGCTTGCAATATTGATCAGAGGTCAACCGCAT
CTCCCCAGTTGTTTCTACTCACCAACATTACTGAGAGAACATGCCCAATA
CTGTTCAACCCATGTCTCCATGGGATGGTTAGGTGTGGTTAACGCCTCTG
TTGGGCAGGCTATGGGATCGAGGGAGCACCTGAAGATGGCGCAGCAGTAT
TTCCAGGTGAGCATTGCCAGCAACAGTGACAACAAGTTATACACAACTGA
GACAAAACCCCATCAATTTGCAAGGACCAGGTACCACTACTGGAAAAAAA
AAGCTGTGCTATTGCCACCATGTAAGAGGTGATAAAGGGTAAAAGCCCCC
TTGCCAGAGAAGGTCAGGAGGCAGAAATGATGACTTCTTCCTTACTCACT
CTGATTTGTTAGGATATCAATAAATGTTTGGGTAGCCTCATTCTTCAGGC
CAAGGTGGATAGCTGATATGTTCTAGCCCCCAATTTAGCACGTTGGTGAT
CTCCAAGTTGGGACAATACATGAGTGCAGGCGGTGGAACTATGTGAAATT
GCAGAAAATACTGTGGGGGTACATCGAGATAAAACTGGACTACACAACTC
ACTGGAAGATAGGAAGCTTGGGTGAGGGTTGCTCAACAACGAAGTTTGTA
CTCCCGGAGTAGTAAACAGAAACTGGGCCATGTCTTGGTGATTTCATGAG
TTGAGCTTCAAGCTGCCTCCTCTGGCTCTGCAAATGCAAGCAGGAGCGAC
CAGAACTACCTTGCCAGTGTGCTCAGCACCTGACCAATTCTCAAAGCTAT
TTTCTGTAAATCTTCTCCAATTGTACCTTATCCTTGTTGTGAATGACCAT
AGCTTGTCGGTGCTTCAGCAAGTGAGTGTGACACAATCCCTGGGCGGCAG
TGCATGGCTTCATGCTTCTACCTGCTCAAGCAGTTTGAGGATGTCAACAT
CTACCTGAACTCTGTCAAGGTGTGTGTGTGTGCGGTAAATACTGAGCAAC
ACTGTTGGTCTTCCCTTGTTTGCTTGCATCTACTACCTTGGTCAATAGAT
CATTGGATTGTGTGACTTCTTTGAGTACGGATGTAGTCATAGTGTAAATA
CATAGTTATTTTCCATAGATCATCCGCTACATCAGTTAGTTAATAAATTC
TGATAAGGGATGTCTTGCTATCGAGCTAGCTTTAAGGAAAGAGACAGCAG
TAATACACCAATAACTTGGTGGTCTCAAAGCATCTAACCCTAGCCATGTG
TACACTCCCTAGTATTCCAGAGCCGACGTTGGAGCCTTCACAATGAAGAG
AGTACAACACTGGTGCTAGATGAGTGTGTTGGAATTTCATTCTGCCAAGG
GGGGTCCATCAGCAAACGAAGTCTGTGATGGTATGCTGAAAATACCAGCA
ATCGAAATCATATTCAGTATCATTGCGCGTCTAAATCCAGTTTAAAACAG
TATAAAACCATAGCATAGGTCTGTGTTTTTTTTTGTATAGGTGGTTGTAA
TGTTTGCTGCTGCCTTCATTGCCGTGTACTATGTTGATGGAAAAGATGGA
AAACTAGCTAATGGTGGTGCCGATTCAAAGTATGAAGATCTGGATGTGCA
ACTGCCACGTTAGCATCGTGGTTGCTAGGTGCGTATGACTTCTTCCAACT
GCCAGGGATCCTGAATCTTCACCCCAATCTTCTGACATATTCAGTACTCC
GATTCATATGTCAGGCATATATGTACAATGATGACGACTTCAACTGGAAT
CATGGGATCTCTCTAGCCTCCACTGGAAACTTCAAGGTACGCCTTCACTA
GGAGCTCTCATGTAATGATGCCTGTTGTTGCTGGATAGCAAGAGAAAATT
GATCCAACACGGTAAAATTGTAGCACTCACGGATTTATCCTTCCCATTTT
CATATCTCATGAGAGCGGCTCCATGTTCTAATTTCATTGTACAAGGCAAC
ATATTCTTCTCGAACAGTGTTTTTTCCTTTCCCACTGAGCTAGCTCTTTT
GTTCTAGTCCCCTGACTCGCCCCAACATTTCCTTCCATGCACTTTCTAGT
CTCAGTATCATCAAAGCGTGATGAAAAGGGACTACCCCTAATATCAAAAG
CAAGATAATAGGTTTGCAAACACTTATGCCCATCTCCATCTCCTGCTTCA
CAAGCATGTATACTTTCCCTCCTTCCTTTCTCATGGGCCCACACATGAAT
TATGACCAATGAATTTCATGGAGACGGGTGGTTTTAGCTCTTGTGTGAAT
TGCAACAGTCATCTTCCTGCGATATCCCCTGGTTGCCCTGGATCAGGCAG
CTGAGGAGGCCCTGCTCCTCATCCAGAATGAGAAAATCAAGCAGGAATAC
TGCTACATCAGCTGGCTGGCCAGGTGC
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Coding sequence (CDS) from alignment at C-tenellus_contig8394:636..5912+

>mRNA_C-tenellus_contig8394.1.1 ID=mRNA_C-tenellus_contig8394.1.1|Name=mRNA_C-tenellus_contig8394.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=645bp|location=Sequence derived from alignment at C-tenellus_contig8394:636..5912+ (Choristocarpus tenellus KU2346)
GCATGCAATCTATTCCGACTCTACAATGGGAAGGCAGCAGAGACTGAGCT
CAAAACTCTGTCAGAACGTGGGCGTAATATTCAGGGAAATGATTTGATTC
GTCACAACATGATCGTATTTGCCAATGGAGAAGGATCACTCAAGGTCCTG
CCCTCCCTCATTGATTTCATCTCCGAGGCCAGGCTCAATCTCGTGATCTA
CTACCTAAAGAACGAGAGCATCCAGGAAGCATACGAGCTGATCAAGGACA
TGGAGCCATCTACCCCACAGGAGTACATCTTGAAAGGCAAGATGATTGAC
AGTGTGGTTAACGCCTCTGTTGGGCAGGCTATGGGATCGAGGGAGCACCT
GAAGATGGCGCAGCAGTATTTCCAGCTTGTCGGTGCTTCAGCAAGTGAGT
GTGACACAATCCCTGGGCGGCAGTGCATGGCTTCATGCTTCTACCTGCTC
AAGCAGTTTGAGGATGTCAACATCTACCTGAACTCTGTCAAGGCATATAT
GTACAATGATGACGACTTCAACTGGAATCATGGGATCTCTCTAGCCTCCA
CTGGAAACTTCAAGGCAGCTGAGGAGGCCCTGCTCCTCATCCAGAATGAG
AAAATCAAGCAGGAATACTGCTACATCAGCTGGCTGGCCAGGTGC
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