mRNA_C-tenellus_contig8393.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8393.1.1
Unique NamemRNA_C-tenellus_contig8393.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8393.1.1 vs. uniprot
Match: D7FRF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF6_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 3.470e-47
Identity = 75/122 (61.48%), Postives = 95/122 (77.87%), Query Frame = 1
Query:   22 QASLDRTVKVWDVRSLGRGKGKRSESSAKPKVLAEMPHHRSVNSAHFSPGGGEWMVTVGQDDKLRLYRDVAQQANGVKISPEHVMPHNNQTGRWLTKFQAAWDPKSTGLFSIGSMQREPHAV 387
            +ASLDR+V++WD R++G G G  S      + +AE+PH RSVNSAHFSP G EWM TV QDDK+RLY+D+   A+G ++S   V+PHNNQTGRWLTKFQA+WDPKS GLF+IGSMQ+ PH +
Sbjct:    8 RASLDRSVRLWDARNVGAGTG--SSGIGGMQHVAELPHFRSVNSAHFSPTG-EWMATVCQDDKIRLYQDLGS-ASGKQVSASQVLPHNNQTGRWLTKFQASWDPKSKGLFAIGSMQKYPHGI 125          
BLAST of mRNA_C-tenellus_contig8393.1.1 vs. uniprot
Match: A0A836C879_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C879_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.550e-32
Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 1
Query:   25 ASLDRTVKVWDVRSLGRGKGKRSESSAKPKVLAEMPHHRSVNSAHFSPGGGEWMVTVGQDDKLRLYRDVA-QQANGVKISPEHVMPHNNQTGRWLTKFQAAWDPKSTGLFSIGSMQREPHAV 387
            ASLD TV +WD R++G+       S+ KP  LA +PH RSVNSAHF+P G  ++VT  QDD+L LY  +A   A G  I+      HNNQTGRWLTKFQA WDPK++ LF  GSM + PH +
Sbjct:    1 ASLDTTVCLWDARNMGKHHSAPKVSARKP--LATLPHARSVNSAHFAPAGA-YLVTTCQDDRLHLYDTLAFAAALGESIA------HNNQTGRWLTKFQAVWDPKASDLFVCGSMSKGPHGI 113          
BLAST of mRNA_C-tenellus_contig8393.1.1 vs. uniprot
Match: W2QSC9_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QSC9_PHYPN)

HSP 1 Score: 110 bits (274), Expect = 1.490e-25
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   25 ASLDRTVKVWDVRSLGRGKGKRSESSAKPKVLAEMPHHRSVNSAHFSPGGGEWMVTVGQDDKLRLY--RDVAQQANGVKIS---PEHV-MPHNNQTGRWLTKFQAAWDPKSTGLFSIGSMQR 372
            ASLDRTV +WD R +         SS K   L  +PHHRS+N A+FSP  G+W+VTVGQD  + ++    + ++   VK +   P+ V +PHNN TGRWLTK  AAWDPK    F IG M++
Sbjct:  399 ASLDRTVCLWDARKM---------SSKKNTPLVTLPHHRSINCAYFSPRNGDWLVTVGQDSYIDMFDTSSLTERKPSVKSAIALPKSVRVPHNNMTGRWLTKLHAAWDPKRPNQFVIGCMEQ 511          
BLAST of mRNA_C-tenellus_contig8393.1.1 vs. uniprot
Match: A0A5D6XZ84_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ84_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.840e-24
Identity = 57/117 (48.72%), Postives = 70/117 (59.83%), Query Frame = 1
Query:   25 ASLDRTVKVWDVRSLGRGKGKRSESSAKPKVLAEMPHHRSVNSAHFSPGGGEWMVTVGQDDKLRLYRDV-AQQANGVKISPEHVMPHNNQTGRWLTKFQAAWDPKSTGLFSIGSMQR 372
            ASLDRTV +WD R L + K            L  MPH RSVN A+FSP G E +VTVGQDD + ++    AQ  +   ++P   +PHNN TGRWLTK  AAWDPK    F +G MQ+
Sbjct:  405 ASLDRTVCLWDARQLRKSKNA---------PLVTMPHRRSVNCAYFSPDG-EHLVTVGQDDYVNVFATGDAQHYDAHSVAPTLAIPHNNATGRWLTKLHAAWDPKRKDQFVLGCMQQ 511          
BLAST of mRNA_C-tenellus_contig8393.1.1 vs. uniprot
Match: A0A3M6VCT6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCT6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 9.080e-24
Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   25 ASLDRTVKVWDVRSLGRGKGKRSESSAKPKVLAEMPHHRSVNSAHFSPGGGEWMVTVGQDDKLRLYRDVAQQA-------NGVKISPEHVMPHNNQTGRWLTKFQAAWDPKSTGLFSIGSMQR 372
            ASLDRTV +WD R +         SS K   L  +PH+RSVN A+FSP  G W+VTVGQD  + ++ D +  A       + + +     +PHNN TGRWLTK  AAWDPK    F IG M++
Sbjct:  397 ASLDRTVCLWDARKM---------SSTKNTPLVTLPHYRSVNCAYFSPRDGAWLVTVGQDSYIDMF-DTSSLAERKTSDRSAITLPNSIRVPHNNMTGRWLTKLHAAWDPKRPNQFVIGCMEQ 509          
BLAST of mRNA_C-tenellus_contig8393.1.1 vs. uniprot
Match: A0A2D4C066_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C066_PYTIN)

HSP 1 Score: 104 bits (260), Expect = 1.220e-23
Identity = 59/118 (50.00%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   25 ASLDRTVKVWDVRSLGRGKGKRSESSAKPKVLAEMPHHRSVNSAHFSPGGGEWMVTVGQDDKLRLYR--DVAQQANGVKISPEHVMPHNNQTGRWLTKFQAAWDPKSTGLFSIGSMQR 372
            ASLDRTV +WDVR L         S +K   L  MPH RSVN A+FSP G E +VTV QDD  R++   D+A+    +  +P   +PHNNQTGRWLTK  AAWDPK    + +G MQ+
Sbjct:  412 ASLDRTVSLWDVRKL---------SKSKNTPLVTMPHTRSVNCAYFSPSG-EHLVTVCQDDYNRVFETADLAK----LPTTPALRIPHNNQTGRWLTKLHAAWDPKRPTQYVVGCMQQ 515          
BLAST of mRNA_C-tenellus_contig8393.1.1 vs. uniprot
Match: K3W540_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W540_GLOUD)

HSP 1 Score: 104 bits (259), Expect = 1.330e-23
Identity = 58/117 (49.57%), Postives = 73/117 (62.39%), Query Frame = 1
Query:   25 ASLDRTVKVWDVRSLGRGKGKRSESSAKPKVLAEMPHHRSVNSAHFSPGGGEWMVTVGQDDKLRLYRDV-AQQANGVKISPEHVMPHNNQTGRWLTKFQAAWDPKSTGLFSIGSMQR 372
            ASLDRTV +WD R L       S+S+ KP  L  MPH RSVN A+FSP G + +VTVG D+ + L+    A+  +   ++P   +PHNNQTGRWLTK  A WDPK    F IG MQ+
Sbjct:  341 ASLDRTVCLWDSRKL-------SKSNNKP--LVTMPHERSVNCAYFSPTG-DHLVTVGLDNYVNLFNTGDAKHHDAHSVAPTLAIPHNNQTGRWLTKLHATWDPKHKDRFVIGCMQQ 447          
BLAST of mRNA_C-tenellus_contig8393.1.1 vs. uniprot
Match: A0A067CEG2_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CEG2_SAPPC)

HSP 1 Score: 95.1 bits (235), Expect = 2.160e-20
Identity = 56/118 (47.46%), Postives = 65/118 (55.08%), Query Frame = 1
Query:   25 ASLDRTVKVWDVRSLGRGKGKRSESSAKPKVLAEMPHHRSVNSAHFSPGGGEWMVTVGQDDKLRLYRDVAQQANGVKISPEHVMPHNNQTGRWLTKFQAAWDPK--STGLFSIGSMQR 372
            ASLDRTV +WD R                  L  +PHHRS+N A+FSP G E +VTVGQDD + LY   A         P     HNNQTGRWLTKF A WDPK  +T  F +GS Q+
Sbjct:  294 ASLDRTVCLWDARQPST-------------PLNMLPHHRSINCAYFSPNG-EALVTVGQDDHVHLYSMPAS-----SDEPTTRFVHNNQTGRWLTKFHAHWDPKCLATPRFVLGSNQQ 392          
BLAST of mRNA_C-tenellus_contig8393.1.1 vs. uniprot
Match: A0A8K1CSD2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSD2_PYTOL)

HSP 1 Score: 95.1 bits (235), Expect = 2.980e-20
Identity = 55/118 (46.61%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   25 ASLDRTVKVWDVRSLGRGKGKRSESSAKPKVLAEMPHHRSVNSAHFSPGGGEWMVTVGQDDKLRLY--RDVAQQANGVKISPEHVMPHNNQTGRWLTKFQAAWDPKSTGLFSIGSMQR 372
            ASLDRTV +WD R L            K   L  MPH RSVN A+FSP G   +VTVGQD+   +Y  RD +  +    + P   + HNNQTGRWLTK  AAWDPK    + IG M++
Sbjct:  377 ASLDRTVCLWDSRQL-----------KKATPLLTMPHSRSVNCAYFSPNGHH-LVTVGQDNYNHVYDTRDASHHSTQ-DVKPTLRISHNNQTGRWLTKLHAAWDPKRPDHYVIGCMEQ 481          
BLAST of mRNA_C-tenellus_contig8393.1.1 vs. uniprot
Match: A0A1V9YZQ7_9STRA (WD repeat-containing protein 76-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZQ7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.040e-19
Identity = 53/110 (48.18%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   10 STSLQASLDRTVKVWDVRSLGRGKGKRSESSAKPKV-LAEMPHHRSVNSAHFSPGGGEWMVTVGQDDKLRLYRDVAQQANGVKISPEHVMPHNNQTGRWLTKFQAAWDPK 336
            +T   ASLDRTV +WD R              KP   +A +PHHRS+N A+FSP G E +VTVGQDD + +Y   A         P     HNNQTGRWLTKF A WDPK
Sbjct:  280 NTFATASLDRTVCIWDAR--------------KPATAIATLPHHRSINCAYFSPNG-EALVTVGQDDFVHVYEMPATDR------PTTRFAHNNQTGRWLTKFHAHWDPK 368          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8393.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRF6_ECTSI3.470e-4761.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C879_9STRA5.550e-3252.46Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
W2QSC9_PHYPN1.490e-2546.72Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A5D6XZ84_9STRA1.840e-2448.72Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3M6VCT6_9STRA9.080e-2444.72Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A2D4C066_PYTIN1.220e-2350.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3W540_GLOUD1.330e-2349.57Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A067CEG2_SAPPC2.160e-2047.46Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A8K1CSD2_PYTOL2.980e-2046.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YZQ7_9STRA1.040e-1948.18WD repeat-containing protein 76-like n=1 Tax=Achly... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8393contigC-tenellus_contig8393:495..1048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FRF6
PFAMsWD40
Model size387
Max annot lvl2759|Eukaryota
KEGG rclassRC00508
KEGG koko:K08678
KEGG ReactionR01384
KEGG Pathwayko00520,ko01100,map00520,map01100
KEGG ModuleM00361
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0008150,GO:0031974,GO:0031981,GO:0034399,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0080134,GO:0080135,GO:0097159,GO:1901363,GO:1901976,GO:2000001,GO:2001020
Exons2
Evalue5.68e-48
EggNOG OGsKOG4328@1|root,KOG4328@2759|Eukaryota
EC4.1.1.35
Descriptioncellular response to DNA damage stimulus
Cds size387
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790103.1162257-CDS-C-tenellus_contig8393:494..7491680790103.1162257-CDS-C-tenellus_contig8393:494..749Choristocarpus tenellus KU2346CDSC-tenellus_contig8393 495..749 +
1680790103.1345315-CDS-C-tenellus_contig8393:916..10481680790103.1345315-CDS-C-tenellus_contig8393:916..1048Choristocarpus tenellus KU2346CDSC-tenellus_contig8393 917..1048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8393.1.1prot_C-tenellus_contig8393.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8393 495..1048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8393.1.1

>prot_C-tenellus_contig8393.1.1 ID=prot_C-tenellus_contig8393.1.1|Name=mRNA_C-tenellus_contig8393.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=129bp
MLCSTSLQASLDRTVKVWDVRSLGRGKGKRSESSAKPKVLAEMPHHRSVN
SAHFSPGGGEWMVTVGQDDKLRLYRDVAQQANGVKISPEHVMPHNNQTGR
WLTKFQAAWDPKSTGLFSIGSMQREPHAV
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mRNA from alignment at C-tenellus_contig8393:495..1048+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8393.1.1 ID=mRNA_C-tenellus_contig8393.1.1|Name=mRNA_C-tenellus_contig8393.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=554bp|location=Sequence derived from alignment at C-tenellus_contig8393:495..1048+ (Choristocarpus tenellus KU2346)
ATGTTGTGCTCTACTTCTTTGCAGGCATCCTTGGACCGGACAGTGAAGGT ATGGGATGTGCGGAGCCTGGGTAGGGGGAAAGGAAAGAGAAGTGAGAGCT CAGCAAAGCCAAAGGTGTTGGCAGAGATGCCTCACCACCGCAGTGTAAAC AGTGCGCACTTCAGCCCAGGGGGGGGGGAGTGGATGGTTACAGTGGGGCA GGATGATAAGTTACGCCTCTATAGGGATGTTGCGCAGCAGGCTAATGGAG TAAAGGTACAGATATATAGAGGATTTTGTGTACCACCACTAATTCCCCTA ACCCTAGACCTGGTGTGCGTGGTGACTTTGAAATGTTGAGGTGATTTTGT TTGGAAAATTAAGGAAGAAAGCAGTAAATGACAATAGTAATGACCCTTTT TTTTGTATATTTGCCTCTCCAGATATCTCCAGAGCACGTCATGCCCCACA ACAATCAGACAGGAAGGTGGCTGACCAAGTTTCAAGCAGCATGGGATCCT AAAAGTACTGGGCTGTTTTCTATTGGGAGCATGCAGAGGGAACCTCACGC GGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig8393:495..1048+

>mRNA_C-tenellus_contig8393.1.1 ID=mRNA_C-tenellus_contig8393.1.1|Name=mRNA_C-tenellus_contig8393.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=387bp|location=Sequence derived from alignment at C-tenellus_contig8393:495..1048+ (Choristocarpus tenellus KU2346)
ATGTTGTGCTCTACTTCTTTGCAGGCATCCTTGGACCGGACAGTGAAGGT
ATGGGATGTGCGGAGCCTGGGTAGGGGGAAAGGAAAGAGAAGTGAGAGCT
CAGCAAAGCCAAAGGTGTTGGCAGAGATGCCTCACCACCGCAGTGTAAAC
AGTGCGCACTTCAGCCCAGGGGGGGGGGAGTGGATGGTTACAGTGGGGCA
GGATGATAAGTTACGCCTCTATAGGGATGTTGCGCAGCAGGCTAATGGAG
TAAAGATATCTCCAGAGCACGTCATGCCCCACAACAATCAGACAGGAAGG
TGGCTGACCAAGTTTCAAGCAGCATGGGATCCTAAAAGTACTGGGCTGTT
TTCTATTGGGAGCATGCAGAGGGAACCTCACGCGGTG
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