mRNA_C-tenellus_contig8392.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8392.2.1
Unique NamemRNA_C-tenellus_contig8392.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8392.2.1 vs. uniprot
Match: D8LE86_ECTSI (Similar to Transmembrane protein 15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE86_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.360e-12
Identity = 40/80 (50.00%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:  445 GGEIIYIARGVKEGAVGLLRDPVRGGQEEGVRGFAKGLGTGVFGVVGRPVRGIFRAGGNTCIGLR----NSAYIVLGASR 672
            GGE+++IA GV + AVG++RDPVRG Q +G RG  +G+G+GVFGVV +PV+G+ +AG N   G+R     +  +V+G+SR
Sbjct:  104 GGEVLFIAEGVAQAAVGIIRDPVRGAQADGARGLVRGIGSGVFGVVLKPVKGVAKAGVNAYTGVRIGVSKAGRVVVGSSR 183
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BLAST of mRNA_C-tenellus_contig8392.2.1 vs. uniprot
Match: A0A6H5L8T3_9PHAE (Dolichol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8T3_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.120e-11
Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:  445 GGEIIYIARGVKEGAVGLLRDPVRGGQEEGVRGFAKGLGTGVFGVVGRPVRGIFRAGGNTCIGLR----NSAYIVLGASR 672
            GGE+++IA GV + A+G++RDPVRG Q +G RG  +GLG+GV GVV +PV+G+ +AG N   G+R     +  +V+G+SR
Sbjct:  253 GGEVLFIAEGVAQAALGVIRDPVRGAQADGARGLVRGLGSGVAGVVLKPVKGVAKAGVNAYTGVRIGVSKAGRVVVGSSR 332
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8392.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE86_ECTSI2.360e-1250.00Similar to Transmembrane protein 15 n=1 Tax=Ectoca... [more]
A0A6H5L8T3_9PHAE4.120e-1148.75Dolichol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8392contigC-tenellus_contig8392:1072..3467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LE86
Preferred nameDOLK
Model size1504
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00902,ko:K05542,ko:K11236
KEGG ReactionR01018
KEGG Pathwayko00510,ko01100,ko04011,map00510,map01100,map04011
Hectar predicted targeting categorysignal anchor
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004168,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006489,GO:0006490,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009555,GO:0009856,GO:0009987,GO:0010483,GO:0012505,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019637,GO:0022414,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0034645,GO:0036211,GO:0042175,GO:0043048,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046465,GO:0048229,GO:0048856,GO:0051703,GO:0051704,GO:0070085,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons3
Evalue1.93e-13
EggNOG OGsCOG0170@1|root,KOG2468@2759|Eukaryota
EC1.3.1.88,2.7.1.108
Descriptiondolichyl monophosphate biosynthetic process
Cds size1227
COG categoryI
BRITEko00000,ko00001,ko01000,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790103.0350704-UTR-C-tenellus_contig8392:1071..13151680790103.0350704-UTR-C-tenellus_contig8392:1071..1315Choristocarpus tenellus KU2346UTRC-tenellus_contig8392 1072..1315 -
1680790103.0785306-UTR-C-tenellus_contig8392:3434..34671680790103.0785306-UTR-C-tenellus_contig8392:3434..3467Choristocarpus tenellus KU2346UTRC-tenellus_contig8392 3435..3467 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790103.0487087-CDS-C-tenellus_contig8392:1315..16941680790103.0487087-CDS-C-tenellus_contig8392:1315..1694Choristocarpus tenellus KU2346CDSC-tenellus_contig8392 1316..1694 -
1680790103.0587502-CDS-C-tenellus_contig8392:2114..23051680790103.0587502-CDS-C-tenellus_contig8392:2114..2305Choristocarpus tenellus KU2346CDSC-tenellus_contig8392 2115..2305 -
1680790103.069482-CDS-C-tenellus_contig8392:2777..34341680790103.069482-CDS-C-tenellus_contig8392:2777..3434Choristocarpus tenellus KU2346CDSC-tenellus_contig8392 2778..3434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8392.2.1prot_C-tenellus_contig8392.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8392 1316..3434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8392.2.1

>prot_C-tenellus_contig8392.2.1 ID=prot_C-tenellus_contig8392.2.1|Name=mRNA_C-tenellus_contig8392.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=409bp
MAGEQTEDTPESLFPLLGESAVLLLSVTVLAWTLHLNTDRDDVAIGLVAC
TFLACALAVLNQRRRERSWAIVARSRNRLTSVDDVLVTSAKDLEEDFPGK
LTNIIDEDDSSKEITQEGVHQGQGKGVALPKRRQYLLGGEIIYIARGVKE
GAVGLLRDPVRGGQEEGVRGFAKGLGTGVFGVVGRPVRGIFRAGGNTCIG
LRNSAYIVLGASRVSSRGKGTRSTNIAPRSMEVGDEASSEGLDEGGGGKE
LPPNLEQTPVPGVSLLQAETLGTPMTMNPSHKGIPNLRGLAVGVVTVPLL
LCSLVIASSSLSEGAHAGGIHLMNHNGCRGNGLRNFSGLSEGKMGNEQVL
QSNDLTKYLWTVLEGSILCSMSEVGKSIRFNWFSSEEHCSYVFTYHTSLN
MGLFHSSI*
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mRNA from alignment at C-tenellus_contig8392:1072..3467-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8392.2.1 ID=mRNA_C-tenellus_contig8392.2.1|Name=mRNA_C-tenellus_contig8392.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2396bp|location=Sequence derived from alignment at C-tenellus_contig8392:1072..3467- (Choristocarpus tenellus KU2346)
CTCCAGCATTGGAATTGCGTAAACTCGAGTAAAATGGCGGGGGAGCAGAC
GGAAGATACCCCAGAATCACTGTTCCCGTTGTTAGGGGAGTCGGCAGTTC
TACTTCTGTCTGTTACAGTCCTGGCTTGGACGCTACACTTGAATACAGAC
CGCGATGACGTTGCAATAGGTCTGGTGGCGTGTACCTTCCTCGCCTGTGC
TCTTGCAGTCCTAAACCAAAGAAGACGTGAGAGATCATGGGCGATCGTTG
CCCGTTCGAGAAATAGACTAACTAGCGTGGATGATGTTCTCGTTACCTCA
GCCAAGGACTTGGAGGAAGACTTCCCTGGCAAACTAACGAACATCATCGA
TGAAGACGATTCGAGTAAGGAGATCACTCAGGAAGGAGTCCATCAGGGAC
AGGGAAAGGGTGTAGCTTTACCGAAGCGAAGGCAGTACTTGTTGGGGGGT
GAAATCATTTATATTGCAAGGGGTGTAAAAGAAGGCGCAGTAGGACTCCT
CCGAGACCCTGTTCGGGGTGGACAAGAGGAAGGAGTCCGAGGCTTCGCTA
AGGGTCTTGGCACAGGCGTTTTTGGCGTCGTTGGTCGGCCGGTTAGGGGG
ATCTTCAGGGCCGGAGGAAATACATGTATAGGGTTGAGGAATAGTGCGTA
CATTGTATTGGGTGCCTCACGAGTGAGCTCCCGGGGTAAGGTGAGTTATG
AACTGGGATGACGAGTTTGGCAATTTGTGTGGACTAGGTTATCGAAGCAG
ATCGATTTATTTGGGCTTGTTGATGTTAAAATTCGGTGTTCCTTTTCTTG
TTCTTGTGTAGCAGCTCCCTTCTCCAGTGCTTTCCTCCTTTACAATTCTT
GCTCTTGCTCCCTGCTTAGAGGGTATCGGATGAAGCTGAACAAAGTGCTG
CAATGGATACTGCCAAAGTTTGACGTAAATACGAAGGGCCGTAGCCTCCT
ATAACCGACGAAAGTATGCCATCCGTCAAAGTCAGTTAATGCCTGTTGTA
GAGCAGCTTTTGACCATCCAAGGCTTACTGTTAAGTCCAATTATCGCAGG
GAGAACATGATTGTCACTGAGACCAAATTGAACTATATCACCCAAATGGA
TCGTACCTGGAAGTTTTCATAGTCCCATCTCAACTCCTCCATTTTTTACG
CGCCACAAACAGGGAACAAGAAGCACCAATATAGCTCCCCGTAGTATGGA
AGTGGGAGACGAGGCAAGTAGCGAAGGGCTTGATGAGGGGGGAGGGGGGA
AAGAACTACCTCCAAACCTTGAACAAACACCAGTCCCGGGAGTATCACTG
TTGCAGGCAGAGACGCTTGGCACACCTATGACAATGAATCCATCACATAA
AGGGTGAGGGTTCATATTTGTACAGCTCTGGACAAACGTCCTCTCACCAC
CATTCTTTTGTCTAAGTTTAGTTGTGTTGATCAGTGGAGGGTGGGTTGGA
AGGGTAAGAAGGGAGAAAAGATTGCGAAATATGGAAGGTAGCTTTGACTC
ATGAATTTTCTTGTAGGAAGTTCTATGCCTTTGGATTTTTTTGACTAGGG
GTATTGTTGTTGCCTCTTGAATCATCCCATGTATCTTGCACAATGTGCTC
CATAACATAATGGTTAATCTGGGATTATGACTTTCCATGTGTCTTACCTC
CTCGCGGTTGTGTACATCAATAGCCAAGCAACATGCAAAGCAGGTCAGGC
CGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTCTGTCTGTCTC
TCTTAACCCCTCTACACGTGTAGCATACCCAACCTCAGAGGCCTAGCTGT
GGGGGTGGTCACTGTGCCATTGTTGCTGTGCAGTCTTGTAATAGCCAGCT
CGTCTTTGAGTGAAGGGGCCCATGCAGGTGGGATTCACTTGATGAACCAT
AATGGCTGCAGAGGTAATGGACTGAGAAATTTCTCTGGTTTGAGTGAGGG
TAAAATGGGGAACGAGCAGGTACTGCAGTCCAACGATCTGACGAAGTACC
TTTGGACTGTATTGGAAGGCTCGATTCTGTGCTCCATGTCTGAGGTGGGG
AAGAGTATCCGCTTTAACTGGTTCAGTAGTGAAGAACATTGCTCGTATGT
TTTTACCTATCACACCTCTTTGAACATGGGACTCTTTCATAGTTCGATTT
GAAAATGGCTGGTCAATTGTGCTGTTTTTCTGGTTGTGTTTAATGGATCC
ACTGATTTGTTTCCCCCAGGCAATTGACGCTATTTTCAGTGTTTCAGCGG
TTAGAGCATCACTTTTACCTCTCGTCTTGTGTCACTGAAATTGCTTGGTG
TCGATGTTGTTACTCTTTCTATTACTTTGAAGGGTGTTATTGTGTCTCCC
GTCCCCTCTTCCTAAAGAGAACGGCCAAAAGCGGGAGGGGGCTGAT
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Coding sequence (CDS) from alignment at C-tenellus_contig8392:1072..3467-

>mRNA_C-tenellus_contig8392.2.1 ID=mRNA_C-tenellus_contig8392.2.1|Name=mRNA_C-tenellus_contig8392.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1227bp|location=Sequence derived from alignment at C-tenellus_contig8392:1072..3467- (Choristocarpus tenellus KU2346)
ATGGCGGGGGAGCAGACGGAAGATACCCCAGAATCACTGTTCCCGTTGTT
AGGGGAGTCGGCAGTTCTACTTCTGTCTGTTACAGTCCTGGCTTGGACGC
TACACTTGAATACAGACCGCGATGACGTTGCAATAGGTCTGGTGGCGTGT
ACCTTCCTCGCCTGTGCTCTTGCAGTCCTAAACCAAAGAAGACGTGAGAG
ATCATGGGCGATCGTTGCCCGTTCGAGAAATAGACTAACTAGCGTGGATG
ATGTTCTCGTTACCTCAGCCAAGGACTTGGAGGAAGACTTCCCTGGCAAA
CTAACGAACATCATCGATGAAGACGATTCGAGTAAGGAGATCACTCAGGA
AGGAGTCCATCAGGGACAGGGAAAGGGTGTAGCTTTACCGAAGCGAAGGC
AGTACTTGTTGGGGGGTGAAATCATTTATATTGCAAGGGGTGTAAAAGAA
GGCGCAGTAGGACTCCTCCGAGACCCTGTTCGGGGTGGACAAGAGGAAGG
AGTCCGAGGCTTCGCTAAGGGTCTTGGCACAGGCGTTTTTGGCGTCGTTG
GTCGGCCGGTTAGGGGGATCTTCAGGGCCGGAGGAAATACATGTATAGGG
TTGAGGAATAGTGCGTACATTGTATTGGGTGCCTCACGAGTGAGCTCCCG
GGGTAAGGGAACAAGAAGCACCAATATAGCTCCCCGTAGTATGGAAGTGG
GAGACGAGGCAAGTAGCGAAGGGCTTGATGAGGGGGGAGGGGGGAAAGAA
CTACCTCCAAACCTTGAACAAACACCAGTCCCGGGAGTATCACTGTTGCA
GGCAGAGACGCTTGGCACACCTATGACAATGAATCCATCACATAAAGGCA
TACCCAACCTCAGAGGCCTAGCTGTGGGGGTGGTCACTGTGCCATTGTTG
CTGTGCAGTCTTGTAATAGCCAGCTCGTCTTTGAGTGAAGGGGCCCATGC
AGGTGGGATTCACTTGATGAACCATAATGGCTGCAGAGGTAATGGACTGA
GAAATTTCTCTGGTTTGAGTGAGGGTAAAATGGGGAACGAGCAGGTACTG
CAGTCCAACGATCTGACGAAGTACCTTTGGACTGTATTGGAAGGCTCGAT
TCTGTGCTCCATGTCTGAGGTGGGGAAGAGTATCCGCTTTAACTGGTTCA
GTAGTGAAGAACATTGCTCGTATGTTTTTACCTATCACACCTCTTTGAAC
ATGGGACTCTTTCATAGTTCGATTTGA
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