mRNA_C-tenellus_contig8391.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8391.2.1
Unique NamemRNA_C-tenellus_contig8391.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8391.2.1 vs. uniprot
Match: A0A7S1UGK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGK0_9STRA)

HSP 1 Score: 222 bits (565), Expect = 8.590e-66
Identity = 120/293 (40.96%), Postives = 181/293 (61.77%), Query Frame = 1
Query:  397 MESFVIGLLSKYLRQYVLGFKREQLSLSFLKGKGEMRDLEVNCEAINDLL--TNVPVIRFSKIHINRLWVKVPLRQIRVEPIRLNIDEVEVEIVEPTDFVTPTHQPLSR--HGATTKRSKYGVGERIRDSFSLDIDKVIVTFRVLGKRKCPLPGPWTPPAARGVIKGLRFFSTDEHGEECSLEQCWRYSKEHMGTTQDIFIFKKATCQSCHFFLVEDQDPFKKGQVEVVKAVPVDLLLTVRRRSLDNFLKGMQIEISLDRVDFELHVSDGSLSALMHFVVGFGYCLFRQGVSA 1263
            MES V  +L KYL+ ++ GF++EQL+LS L+G+ EM+D+E+N +A+N+LL    V  +R   I +N L VK+ + +I  +PI L IDEV VEI EP  F       +         K SKYG+G+RI D   ++++++ +TFR  GKRK    G WTPPAA  + KG+R F+TD +G E +L++ W+Y++   G  Q +++FK+ TC S   +LV D+       +  ++ VPVD+ L +R+    + L G+QIEI++D V  +   + G L A MHFV GF +C+FRQG  A
Sbjct:    3 MESMVSSMLGKYLKIFIRGFRKEQLNLSILRGQYEMKDIEINVDAVNELLEYAQVSQVRVRCIRVNSLTVKLSVAKIASKPITLFIDEVTVEIDEPASFDKEAGAGVQELLDKLAVKPSKYGLGDRIGDGICVEVNQLKLTFRTCGKRKVDRVGEWTPPAAVLLAKGIRLFNTDGYGREGNLDEVWQYNRHRRGAMQ-VYLFKRITCASVEVYLV-DERLSPPRIIHGMREVPVDVDLALRKLKATSVLTGVQIEINVDAVSLDFS-APGCLKAFMHFVAGFAFCIFRQGGGA 292          
BLAST of mRNA_C-tenellus_contig8391.2.1 vs. uniprot
Match: A0A1E7FW49_9STRA (PH domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW49_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.120e-31
Identity = 89/318 (27.99%), Postives = 157/318 (49.37%), Query Frame = 1
Query:  397 MESFVIGLLSKYLRQYVLGFKREQLSLSFLKGKGEMRDLEVNCEAINDLLTNV-PVIRFSKIHINRLWVKVPL-RQIRVEPIRLNIDEVEVEIVEPTDFVTPTHQ----PLSRHGATTKR----------SKYGVGERIRDSFSLDIDKVIVTFRVLGKRKCPLPGPWTPPAARGVIKGLRFFSTDEHGEECSLEQCWRYSKEHMGTTQDIFIFKKATCQSCHFFLVEDQ-DPFKKGQVEV----VKAVPVDLLLTVRRRSLDNFLKGMQIEISLDRVDFELHVSDGSLSALMHFVVGFGYCLFRQGVSAEMLRDRTR 1287
            ME  V+G+  + L + ++GF++EQ++ + L GKGE+RD+ +NC+ IND +  + P IR  +IH++R+   V     +R  PI ++I  V  +I EP   + P +Q     L   G   ++            YG+ +RI D+  +D+    + F+  GK K   PGPWTPP  +   K L+    D  G E + ++ W ++    G    I I+KK   + C   LV    DP      E     +  + +++ + V+RR  D  +  +Q+++ + +VD +  +   S+  L H  +G  YCL +     + L+ + +
Sbjct:    1 MEQLVLGIFQEQLAKIIVGFRKEQVNANLLNGKGEIRDVSLNCDVINDSIARLCPYIRLEEIHVSRIGFHVTSWTNLRKAPIIVDIGIVSAKIQEPLSLL-PRNQRRLIELITEGELIRKIAEGLKPFRTGAYGLVDRIVDNLMIDVKSFRLEFQTWGKFKTRRPGPWTPPLLQVECKNLKICMVDAEGNEGNPDEVWHHNG---GRRDSINIYKKVYGE-CQVRLVPQHFDPENNSSTESQPCELAKMKMEIQMAVKRRLRDGAILAVQVDVMIPKVDVD--IDSRSIRLLTHLAIGMQYCLAKDRSFEDPLKSKAK 311          
BLAST of mRNA_C-tenellus_contig8391.2.1 vs. uniprot
Match: A0A448ZDS3_9STRA (PH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDS3_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.780e-27
Identity = 81/303 (26.73%), Postives = 147/303 (48.51%), Query Frame = 1
Query:  397 MESFVIGLLSKYLRQYVLGFKREQLSLSFLKGKGEMRDLEVNCEAINDLLTNV-PVIRFSKIHINRLWVKVPL-RQIRVEPIRLNIDEVEVEIVEPTDFVTPTHQPLSR---HGATTKR-----------SKYGVGERIRDSFSLDIDKVIVTFRVLGKRKCPLPGPWTPPAARGVIKGLRFFSTDEHGEECSLEQCWRYSKEHMGTTQDIFIFKKATCQSCHFFLVEDQDPFKKGQ-----VEVVKAVPVDLLLTVRRRSLDNFLKGMQIEISLDRVDFELHVSDGSLSALMHFVVGFGYCL 1242
            ME  V+GL  + L + ++GF++EQ++ + L GKGE+RD+ +NC  +N+    + P +R  +IH++R+   V     +R  PI ++I  V   + EP   + P+   + +        KR           S YG+ +RI D+  +D++   + F+  GK K   PGPW PP  +  +K ++    D  G E + ++ W +++   G   +  I++K   + C   L   QDP    Q        + ++ +++ +   RR  D  +   Q ++++  VD ++   D  +  L HF  G  YCL
Sbjct:    1 MEQLVLGLFQEQLSKVIIGFRKEQVNANLLNGKGEIRDVNLNCSLLNESFARLFPYVRLEEIHVSRIGFHVTSWTNLRRAPIIVDIGHVIARVEEPLGLLPPSELKVIQIITESELIKRLSEGFVPFSVGSSYGLADRIVDNMVVDLESFRLEFQTYGKFKTRRPGPWMPPLLQIEMKHIKACMVDPEGCEGTPDRVWAHNQ---GRRDNFLIYRKVQGE-CKIRL-SPQDPSLNEQENGESYRDIASLKLEIQIATERRLRDGAVMACQFDVTIPEVDVDVDSRD--VRQLAHFASGLQYCL 296          
BLAST of mRNA_C-tenellus_contig8391.2.1 vs. uniprot
Match: A0A7M5X4A8_9CNID (Chorein N-terminal domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X4A8_9CNID)

HSP 1 Score: 87.0 bits (214), Expect = 1.940e-14
Identity = 44/142 (30.99%), Postives = 79/142 (55.63%), Query Frame = 1
Query:  397 MESFVIGLLSKYLRQYVLGFKREQLSLSFLKGKGEMRDLEVNCEAINDLLTNVPVIRFSKIHINRLWVKVPLRQIRVEPIRLNIDEVEVEIVEPTDFVTPTHQPLSRHGATTKRSKYGVGERIRDSFSLDIDKVIVTFRVLG 822
            M  +    ++K L ++        LSL FLKG+GE+ +LE+    I+DLL   P ++ SK+  NR+  KVP   ++ +P++L +D V+V+I+   +    +  P+    + TK +KYG  E++ D   + I+ + V+F  +G
Sbjct:    1 MAQWAKNQIAKQLAKFAKNLDPNSLSLKFLKGEGELTNLELEEGVISDLLEFPPWLQLSKVTCNRISAKVPWTSLKSDPLKLILDTVDVQIIASEELRAKSSSPVINKASMTKPTKYGFAEKVVDGMYVSINTLTVSFTSIG 142          
BLAST of mRNA_C-tenellus_contig8391.2.1 vs. uniprot
Match: A0A6S7FXV8_PARCT (Chorein N-terminal domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FXV8_PARCT)

HSP 1 Score: 86.3 bits (212), Expect = 3.460e-14
Identity = 64/245 (26.12%), Postives = 118/245 (48.16%), Query Frame = 1
Query:  397 MESFVIGLLSKYLRQYVLGFKREQLSLSFLKGKGEMRDLEVNCEAINDLLTNVPVIRFSKIHINRLWVKVPLRQIRVEPIRLNID--EVEVEIVEPTDFVTPTHQPL--SRHGATTKRSKYGVGERIRDSFSLDIDKVIVTFRVLGKRKCPLPGPWTPPAARGVIKGLRFFSTDEHGEECSLEQCWRYSKEHMGTTQDIFIFKKATCQSCHFFLVEDQDPFKKGQVEVVKAVPVDLLLTVRRRSL 1119
            M + +   + K L ++       ++SL FLKG+GE+R+LE+N + + DLL   P IR ++   N++  K+   +++ +PIRL +D  EV++E++E        +QP       A  K S+YG  E++ D   + I+ V++ F+    R            A   +  L   STD   E+ SL    R   +H    +++  FK+ T  +     V+    +K GQ +   + P+ L+ +  + ++
Sbjct:    1 MTTIIKNQIVKQLARFTKNLSPSKISLKFLKGEGELRNLELNEKFLTDLLELPPFIRLTRAVCNKISAKIHWTRLKTDPIRLFLDCVEVDMEMIESVSEDFHLNQPAVSPNQPAREKPSEYGFAEKVVDGMHVTINSVVMAFKTQTFR------------ATFQMSHLSVHSTDPSWEKASLRNT-RIKDDH---GKEVLTFKQITFGTLR---VDADALYKSGQEDSSSSSPLRLITSAAKLNI 226          
BLAST of mRNA_C-tenellus_contig8391.2.1 vs. uniprot
Match: A0A1E5WHU5_9POAL (Chorein N-terminal domain-containing protein (Fragment) n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5WHU5_9POAL)

HSP 1 Score: 85.5 bits (210), Expect = 5.350e-14
Identity = 69/312 (22.12%), Postives = 139/312 (44.55%), Query Frame = 1
Query:  397 MESFVIGLLSKYLRQYVLGFKREQLSLSFLKGK-GEMRDLEVNCEAINDLLTNVPVIRFSKIHINRLWVKVP-LRQIRVEPIRLNIDEVEVEIVEPTDFVTPTHQPLSRHGATTKRSKYGVGERIRDSFSLDIDKVIVTFRVLGKRKCPLPGPWTPPAARGVIKGLRFFSTDEHGEECSLEQCWRYSKEHMGTTQDIFIFKKATCQSCHFFLVEDQDPFKK-----------------------GQVEVVKAVPVDLLLTVRRRSLDNFLKGMQIEISLDRVDFELHVSDGSLSALMHFVVGFGYCLFRQGV 1257
            MES +   L   L+ ++  F R+Q  L   +G+  ++ +L++N +A++  L   P +      + +L + +P +  ++VEPI +NID++++ +VE  D    +    +   + TK S YG  ++I D  ++ +  V +     G  +      W+PP A    + L  ++T+E  +  +L+     +++       I++FKK   QS    L+   D F                         G    ++ +  +  +TV+R   +N L G+++++ +        +S+  L A + F+ G   CL R  V
Sbjct:    1 MESIIARALEYTLKYWLKSFSRDQFKL---QGRTAQLSNLDINGDALHASLGLPPALAVDTARVGKLQITLPSVSNVQVEPIVVNIDKLDLVLVEKDDSENLSPSSTASSPSATKSSGYGYADKIADGMTVQVGIVNLLLETHGGARRQGDATWSPPLAAITFRDLVLYTTNEKWQVVNLKD----ARDFSNNKGFIYVFKKLEWQSLSVDLLPHPDMFTDARFNSSSSHDNKRDDDGAKRMFFGGERFLEGISGEANITVQRTEQNNPL-GLEVQLHITEAVCPA-LSEPGLRAFLRFMTGVSVCLNRGDV 303          
BLAST of mRNA_C-tenellus_contig8391.2.1 vs. uniprot
Match: A0A6V7UVT8_9BILA (Hypothetical protein n=2 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7UVT8_9BILA)

HSP 1 Score: 84.3 bits (207), Expect = 1.390e-13
Identity = 45/138 (32.61%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  397 MESFVIGLLSKYLRQYVLGFKREQLSLSFLKGKGEMRDLEVNCEAINDLLTNVPVIRFSKIHINRLWVKVPLRQIRVEPIRLNIDEVEVEIVEPTDFVTPTHQPLSRHGATTKRSKYGVGERIRDSFSLDIDKVIVTF 810
            M S +   + K+L  +    K EQ+SL  L+GKG++R+LE+N E I++ L   P ++  K H + + VK+P  QI+  P++L ++E++V I      VTPT   +S+  + T    Y + ER+ +  SL +  + + F
Sbjct:    1 MASLIKNQIVKHLSTFARNLKPEQISLEVLRGKGQLRNLELNEEVISERLEFPPWLKIVKAHCSSVTVKIPWTQIKSAPVQLYVEELQVVI----RLVTPTSPNISKKTSPTHNKSYDLPERVLECLSLYVQSIEIYF 134          
BLAST of mRNA_C-tenellus_contig8391.2.1 vs. uniprot
Match: A0A6V7TPZ9_9BILA (Hypothetical protein n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7TPZ9_9BILA)

HSP 1 Score: 84.0 bits (206), Expect = 1.710e-13
Identity = 45/138 (32.61%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  397 MESFVIGLLSKYLRQYVLGFKREQLSLSFLKGKGEMRDLEVNCEAINDLLTNVPVIRFSKIHINRLWVKVPLRQIRVEPIRLNIDEVEVEIVEPTDFVTPTHQPLSRHGATTKRSKYGVGERIRDSFSLDIDKVIVTF 810
            M S +   + K+L  +    K EQ+SL  L+GKG++R+LE+N E I++ L   P ++  K H + + VK+P  QI+  P++L ++E++V I      VTPT   +S+  + T    Y + ER+ +  SL +  + + F
Sbjct:    1 MASLIKNQIVKHLSTFARNLKPEQISLEVLRGKGQLRNLELNEEVISERLEFPPWLKIVKAHCSSVIVKIPWTQIKSAPVQLYVEELQVVI----RLVTPTSPNISKKTSPTHNKSYDLPERVLECLSLYVQSIEIYF 134          
BLAST of mRNA_C-tenellus_contig8391.2.1 vs. uniprot
Match: UPI00106C25AC (UHRF1-binding protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C25AC)

HSP 1 Score: 83.2 bits (204), Expect = 3.380e-13
Identity = 81/316 (25.63%), Postives = 146/316 (46.20%), Query Frame = 1
Query:  397 MESFVIGLLSKYLRQYVLGFKREQLSLSFLKGKGEMRDLEVNCEAINDLLTNVPVIRFSKIHINRLWVKVPLRQIRVEPIRLNID--EVEVEIVEPTDF--VTPTHQPLSRHGATTKRSKYGVGERIRDSFSLDIDKVIVTFRVLGKRKCPLPGPWTPPAARGVIK--GLRFFSTDEHGEECSLEQCWRYSKEHMGTTQDIFIFKKATCQSCHFFLVEDQDPFKKGQVEV-VKAVPVDLLLTVRRRSLDNFLKGMQIEISLDRVDFELH-VSDGSLSALMHF----VVGFGYCLFRQGVSAEMLRDRTRIAKSNST 1308
            M + +   + K L ++       ++SL FLKG+GE+R+LE+N + + DLL   P IR ++   N++  K+   +++ +PIRL +D  EV++E++E +D   +  T    +   A  K S+YG  E++ D   + I+ V++ F+               P  R   +   L   STD   E+ SL       K+  G  +++  FK+ T  +     ++    +K GQ E  + + P+ L+ +  +  L+  +K    + S+  V   LH +SD  L  L H     V GF   + +     +       +A  +ST
Sbjct:    1 MTTIIKNQIVKQLARFTKNLSPSKISLKFLKGEGELRNLELNEKFLTDLLELPPFIRLTRAVCNKISAKIHWTRLKTDPIRLFLDCVEVDMEMIEVSDDFNLKQTSSVTANQVAREKPSEYGFAEKVVDGMHVTINSVVMAFKT--------------PTFRATFQMSHLSVHSTDPSWEKSSLRNT--RIKDEKG--KEVLTFKQITFGTLR---IDADALYKSGQEESSLSSSPLRLITSAAK--LNIVIKKKIEDCSV--VAARLHAISDDILWVLTHVQLRAVAGFAKSVVQVVEKCKKSEPAPSVASDDST 291          
BLAST of mRNA_C-tenellus_contig8391.2.1 vs. uniprot
Match: A0A3L6G6T4_MAIZE (Zinc finger BED domain-containing protein RICESLEEPER 2 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6G6T4_MAIZE)

HSP 1 Score: 83.2 bits (204), Expect = 3.630e-13
Identity = 74/313 (23.64%), Postives = 139/313 (44.41%), Query Frame = 1
Query:  397 MESFVIGLLSKYLRQYVLGFKREQLSLSFLKGK-GEMRDLEVNCEAINDLLTNVPVIRFSKIHINRLWVKVP-LRQIRVEPIRLNIDEVEVEIVEPTDFVTPTHQPLSRHGAT------TKRSKYGVGERIRDSFSLDIDKVIVTFRVLGKRKCPLPGPWTPPAARGVIKGLRFFSTDEHGEECSLEQCWRYSKEHMGTTQDIFIFKKATCQSCHFFLVEDQDPFKKGQVEVVKAVPVDLLLTVRRRSL---DNFLKGMQIE--ISLDR--------VDFELHV--------SDGSLSALMHFVVGFGYCLFR 1248
            MES +   L   L+ ++  F R+Q  L   +G+  ++ +L++N +A++  L   P +      + +L + +P L  ++VEPI +NID++++ +VE  D      + LS   +T      TK S YG  ++I D  ++ +  V +     G         W+PP A    + L  ++T+E  +  +L++    +++       I++FKK   QS    L+   D F   +                +R     + FL+G+  E  I++ R        ++ +LH+        S+  L A + F+ G   CL R
Sbjct:    1 MESIIARALEYTLKYWLKSFSRDQFKL---QGRTAQLSNLDINGDALHASLGLPPALAVDTARVGKLQITLPSLSNVQVEPIEVNIDKLDLVLVEKDDS-----ENLSSPSSTASXXXXTKSSGYGYADKIADGMTVQVGIVNLLLETHGGAHRQGDATWSPPLAAITFRDLVLYTTNEKWQVVNLKE----ARDFSNNKGFIYVFKKLEWQSLSVDLLPHPDMFADARFNSSXXXXXXXXXXXAKRMFFGGERFLEGISGEANITVQRTEQNNPLGLEVQLHITEAVCPALSEPGLRAFLRFMTGVSVCLNR 301          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8391.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1UGK0_9STRA8.590e-6640.96Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A1E7FW49_9STRA2.120e-3127.99PH domain-containing protein n=1 Tax=Fragilariopsi... [more]
A0A448ZDS3_9STRA2.780e-2726.73PH domain-containing protein n=1 Tax=Pseudo-nitzsc... [more]
A0A7M5X4A8_9CNID1.940e-1430.99Chorein N-terminal domain-containing protein n=1 T... [more]
A0A6S7FXV8_PARCT3.460e-1426.12Chorein N-terminal domain-containing protein n=1 T... [more]
A0A1E5WHU5_9POAL5.350e-1422.12Chorein N-terminal domain-containing protein (Frag... [more]
A0A6V7UVT8_9BILA1.390e-1332.61Hypothetical protein n=2 Tax=Meloidogyne enterolob... [more]
A0A6V7TPZ9_9BILA1.710e-1332.61Hypothetical protein n=1 Tax=Meloidogyne enterolob... [more]
UPI00106C25AC3.380e-1325.63UHRF1-binding protein 1-like n=1 Tax=Dendronephthy... [more]
A0A3L6G6T4_MAIZE3.630e-1323.64Zinc finger BED domain-containing protein RICESLEE... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8391contigC-tenellus_contig8391:2489..6128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr47697
PFAMsChorein_N
Model size1334
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.19e-28
EggNOG OGs2EIA2@1|root,2SNRU@2759|Eukaryota,2XC41@2836|Bacillariophyta
DescriptionN-terminal region of Chorein or VPS13
Cds size936
COG categoryU
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8391.2.1prot_C-tenellus_contig8391.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8391 2885..6128 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790102.8168132-UTR-C-tenellus_contig8391:2488..28841680790102.8168132-UTR-C-tenellus_contig8391:2488..2884Choristocarpus tenellus KU2346UTRC-tenellus_contig8391 2489..2884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790102.833609-CDS-C-tenellus_contig8391:2884..29131680790102.833609-CDS-C-tenellus_contig8391:2884..2913Choristocarpus tenellus KU2346CDSC-tenellus_contig8391 2885..2913 +
1680790102.846236-CDS-C-tenellus_contig8391:3088..31791680790102.846236-CDS-C-tenellus_contig8391:3088..3179Choristocarpus tenellus KU2346CDSC-tenellus_contig8391 3089..3179 +
1680790102.8590984-CDS-C-tenellus_contig8391:3432..36531680790102.8590984-CDS-C-tenellus_contig8391:3432..3653Choristocarpus tenellus KU2346CDSC-tenellus_contig8391 3433..3653 +
1680790102.8688128-CDS-C-tenellus_contig8391:4003..40611680790102.8688128-CDS-C-tenellus_contig8391:4003..4061Choristocarpus tenellus KU2346CDSC-tenellus_contig8391 4004..4061 +
1680790102.8828106-CDS-C-tenellus_contig8391:4525..47261680790102.8828106-CDS-C-tenellus_contig8391:4525..4726Choristocarpus tenellus KU2346CDSC-tenellus_contig8391 4526..4726 +
1680790102.8937278-CDS-C-tenellus_contig8391:5158..53051680790102.8937278-CDS-C-tenellus_contig8391:5158..5305Choristocarpus tenellus KU2346CDSC-tenellus_contig8391 5159..5305 +
1680790102.9029176-CDS-C-tenellus_contig8391:5939..61281680790102.9029176-CDS-C-tenellus_contig8391:5939..6128Choristocarpus tenellus KU2346CDSC-tenellus_contig8391 5940..6128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8391.2.1

>prot_C-tenellus_contig8391.2.1 ID=prot_C-tenellus_contig8391.2.1|Name=mRNA_C-tenellus_contig8391.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=312bp
MESFVIGLLSKYLRQYVLGFKREQLSLSFLKGKGEMRDLEVNCEAINDLL
TNVPVIRFSKIHINRLWVKVPLRQIRVEPIRLNIDEVEVEIVEPTDFVTP
THQPLSRHGATTKRSKYGVGERIRDSFSLDIDKVIVTFRVLGKRKCPLPG
PWTPPAARGVIKGLRFFSTDEHGEECSLEQCWRYSKEHMGTTQDIFIFKK
ATCQSCHFFLVEDQDPFKKGQVEVVKAVPVDLLLTVRRRSLDNFLKGMQI
EISLDRVDFELHVSDGSLSALMHFVVGFGYCLFRQGVSAEMLRDRTRIAK
SNSTTKADPRET
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mRNA from alignment at C-tenellus_contig8391:2489..6128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8391.2.1 ID=mRNA_C-tenellus_contig8391.2.1|Name=mRNA_C-tenellus_contig8391.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3640bp|location=Sequence derived from alignment at C-tenellus_contig8391:2489..6128+ (Choristocarpus tenellus KU2346)
GTGGGGTAGGAGACCTGTAAATTCATCAATATGAGACAGGAGATGTGGAG AGTGAGAAGTATCATGGTGAAGGCTGAAGAACTGGATGGCTTAAGCATAG GGTGATAGGAAATACGCCGTCACTCAACCCCATTGACTAAGGAAAATTCA CAGTGATTGGCAATCGTCACCATCTACCAAACAGTTTACCCCATCCTGGG TAGGACTGTTGTGCACAATGACCATTTGATTTGAGGAGAAGCCTAAGGTT ACGCTGGTATTACTAAGATTCTGAGAACGTGTTTATCGTGCGAAGTACTA GGCCACCGAGACGTACCCAAGTAACAGTGAACTATTGTGAACTGCGCTTG GTATGTTAAGTCAACCTTGTGTGACTGTGATCATTCCTTGTCCATCATGG AAAGCTTCGTCATCGGATTGCTGAGGTGGGCTGACCTATTGCCTCATGAA TCCATTGTAGAACGTATGGCTCAGTGCCTGTCTATGCACAATGCCAACTT CGTCAGTCAGTTTTGTCGAACTTAATGCAGTCGCTTTTGTCGATGTTAGT AAAATTTTGCGAAATTGCCATTGACCATGACATCGGTTCCAACTCTGCAG CAAGTACTTGCGCCAGTACGTCCTCGGGTTCAAACGAGAGCAGCTCAGCC TATCCTTCCTCAAGGGTAAAGGGGAGATGCGGGATCTTGAGGTGAGCCTA ACTTTTTAGGGTGTCTTCCCCTCAGAGTAGAATTGTTCGAGATCTCAGAT GTGGGCAATATCCAGGATCAGTCTGTATTGTTGGCAGCAGGAATAAATGC TATCGTAGACCCTTTCTCATCTTGACTATCAGCGAGCATGTGAATGACGG AATCTGGTGAGGCTAGTACTAGGTGCTCCTTGGTAATGCCTGGAGACTAA TATCTTCCTACAAGAAAATAGTATTCTCTCTTCCCTTTCTCCAGGTGAAC TGTGAAGCGATAAATGACCTGCTTACCAACGTCCCCGTAATAAGATTCAG CAAAATCCACATCAATCGCTTGTGGGTTAAGGTACCCCTGCGGCAGATCC GTGTGGAGCCAATCAGACTAAACATAGATGAAGTCGAGGTGGAGATAGTG GAACCGACTGACTTTGTCACTCCCACCCATCAGCCCTTGTCCCGCCATGG CGCGACAACCAAGAGGTGAGTAACCCAGGGCTTAAGGAAAGCCCCCTGTT TTATCAATTAATTGCTATTGGCTTCCCAGTATCACCATTTTTAATCTTAG TGGCATTTCTGATCTGTCTTGAAATGTACTGATTGACTCGCTGATTGTCT TGTGTGCTGGCAGAAGATTAGTAATGGTTCCCCTGCAAGGGTGGGAATAG TGTGTTAACTTTTCGTTTCCTTTCTCCTGTCACAATTTTTGTTCTGCAAG CTCCTTCACCTTGAGTTAGTCTCTTGCAGATAGTGTTTTAAGGTATTTCC CCAACCTGTACAAGTTCAATGCAAGCAGTTCAACTGTGTCCCTGACCTCT TGTGGTGATGGTCAGGTCCAAGTACGGAGTTGGAGAGAGGATTAGGGATT CTTTCTCACTGGATATTGACAAGGTACAGCATTGCCCTTGCTATGAAGTA CAACTGGAAACTATGGAAATCTTTACCTAGATGTCAATGTGTGGTTCAGT GAATCTCTTGTGATTTCCACTCCAATATCACCACACACACTTACAAATGC TTTTTGCCCAAGCCTCTGAAAATGTGGGCTTTCACTGAGTGGACCATTGT TCTACCACTAATTATCCTGTGATATGTAAGATACAACTTCTAAGTGTGAT GTCCCAACTTGTTCCTTACCCCATGCTATGTTCTGGCTGGTAGGCATATC TCTCCCATTGACAATATTGAACACCTGAAAGCTAACCATAGCACATATTG CCTCATTCCTCCTATGTGCCATATCTTTTGCTACCATAGCTATGTTTGAC GTGGACTGCTACATTAGGTCACTCTCCTGTTGTGCTATCTCTGAGTCCCC AACCCTAAACTCAAGCGGATTGTAACTGTAAAAAAAGGTCATTGTTACCT TTCGCGTTCTGGGTAAAAGAAAGTGCCCACTCCCTGGGCCATGGACTCCA CCGGCTGCAAGGGGTGTGATCAAGGGCCTGAGGTTCTTCAGTACAGATGA GCATGGAGAGGAATGTAGCCTGGAGCAGTGCTGGAGATACAGCAAGGAGC ACATGGGGACTACCCAAGACATATTCATTTTCAAGAAGGTGAGTTGAATA TTCAAATATTTGCTATTTCAAGATTTGTAACCAATGCCGGAAGATGAAGA TTCGGTTTATTTTGGTGTGAGGAATGTGTAAGTTATCCTTCTTATATTTG TGGCAGCGATTCTGTTCATTTCATTGGGAAAAGTGAAGGCTGTGGATATA TCCTTCTGTCTTTGCAGTTCAGTGTGTGGAATGGAAGGTACAAATGATCT GGATTGCTCTAGAGTATTGATAGTCCTCATGCTATGCTATATCTTACATG CACATTGCACAGAGCTCGTGGAGTATTACTCACACCTACATGTATTCCAG AGGGTATCAAAGACCTCACACAAGAAAGATTGAATTGTGTGCAGTACCCC CTGCATGAATATATCACAGGATCCTCTAGTGATTTTGACAGGTATGCTTT GTTTCATTGTTCTGTCACAGGCAACCTGCCAGTCTTGTCATTTTTTTTTG GTAGAGGATCAAGACCCATTCAAGAAGGGACAGGTTGAGGTTGTTAAGGC AGTACCAGTGGACTTGCTTCTAACAGTACGCAGAAGATCTTTGGACAACT TTCTCAAAGGAATGCAGGTATGATGCGGGCAAGGCCTTGGATTGGAGCTA GATCAAACTGACAGTTTCCACACACGCAAGGCCTGCATACTGTACGTGGG CAATGGAAGTGGTCAAGATTGGAACTAGTTGGTCCTTGCAGCTGTCCCTC AGCAGCAACAACAACAATAATGATAATAATAATAATAATAACAATAATGA GTAGCTGTATGTATGTGCATGATTGCACTTCCACATTTAGCTTATTCCAG CAATATTAGTTAGGCTGTTGCTAATTTCGACTTTAATTGCAGTACTCAAT GGTTCTCACTTTAATTTCACAGTGGTTGAAGTGATAAGATCAATATCCTC ATGTGAGTTACTAGTATTGAGGAGCTACCTATCTGGCATTGTTACATGTA CAACTGCAAAGTGCTGCAACCATCTTATTTCTGTGTATTCTTTGATATGC TTGTCCAATTCTCTCTGTTGATGTCGGTCGTTTCACTCTTAAACAGCGGA AAGTGTCCAATTCTTTCTATCTGCATTACTACAGTTGATGCAGAAAGTCA CCATACTCCCTCGTTCTAAGTTAGTAACAATTGTCTCATGTACCATATTG GTCTACCTCCAACAATTGCACCATGACCATGACATCTCCTGCCATGTGAA GATTGAGATAAGCTTGGACCGGGTGGACTTTGAGTTGCATGTTTCCGATG GCTCTCTGTCGGCCCTAATGCATTTTGTGGTGGGATTTGGGTATTGCTTA TTTCGACAAGGTGTGTCTGCAGAAATGCTCAGGGACAGGACTCGGATTGC TAAGTCCAACAGCACTACAAAGGCAGACCCTAGAGAGACT
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Coding sequence (CDS) from alignment at C-tenellus_contig8391:2489..6128+

>mRNA_C-tenellus_contig8391.2.1 ID=mRNA_C-tenellus_contig8391.2.1|Name=mRNA_C-tenellus_contig8391.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=936bp|location=Sequence derived from alignment at C-tenellus_contig8391:2489..6128+ (Choristocarpus tenellus KU2346)
ATGGAAAGCTTCGTCATCGGATTGCTGAGCAAGTACTTGCGCCAGTACGT
CCTCGGGTTCAAACGAGAGCAGCTCAGCCTATCCTTCCTCAAGGGTAAAG
GGGAGATGCGGGATCTTGAGGTGAACTGTGAAGCGATAAATGACCTGCTT
ACCAACGTCCCCGTAATAAGATTCAGCAAAATCCACATCAATCGCTTGTG
GGTTAAGGTACCCCTGCGGCAGATCCGTGTGGAGCCAATCAGACTAAACA
TAGATGAAGTCGAGGTGGAGATAGTGGAACCGACTGACTTTGTCACTCCC
ACCCATCAGCCCTTGTCCCGCCATGGCGCGACAACCAAGAGGTCCAAGTA
CGGAGTTGGAGAGAGGATTAGGGATTCTTTCTCACTGGATATTGACAAGG
TCATTGTTACCTTTCGCGTTCTGGGTAAAAGAAAGTGCCCACTCCCTGGG
CCATGGACTCCACCGGCTGCAAGGGGTGTGATCAAGGGCCTGAGGTTCTT
CAGTACAGATGAGCATGGAGAGGAATGTAGCCTGGAGCAGTGCTGGAGAT
ACAGCAAGGAGCACATGGGGACTACCCAAGACATATTCATTTTCAAGAAG
GCAACCTGCCAGTCTTGTCATTTTTTTTTGGTAGAGGATCAAGACCCATT
CAAGAAGGGACAGGTTGAGGTTGTTAAGGCAGTACCAGTGGACTTGCTTC
TAACAGTACGCAGAAGATCTTTGGACAACTTTCTCAAAGGAATGCAGATT
GAGATAAGCTTGGACCGGGTGGACTTTGAGTTGCATGTTTCCGATGGCTC
TCTGTCGGCCCTAATGCATTTTGTGGTGGGATTTGGGTATTGCTTATTTC
GACAAGGTGTGTCTGCAGAAATGCTCAGGGACAGGACTCGGATTGCTAAG
TCCAACAGCACTACAAAGGCAGACCCTAGAGAGACT
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