mRNA_C-tenellus_contig839.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig839.3.1
Unique NamemRNA_C-tenellus_contig839.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig839.3.1 vs. uniprot
Match: D7FRL9_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL9_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 3.360e-41
Identity = 73/139 (52.52%), Postives = 99/139 (71.22%), Query Frame = 3 
Query:   45 WDVEVELHGEHKVITVQPGDSILESAEMAGLTLSYECRRGNCTSCAAKILHGSSPFVETHAEKRSGTSDPEGYVLTCCSFPVGPGVKLSLGRNPDMWEDFCARFTQEETREMLSEASSEIRMDYANKYPEELREYLSRQ 461
            WDVEV+ HGE +VITVQPGDSILE+AEM+G+ LSYECRRGNC SCAA++ +GSS   E  A++      P+G+VLTC + P GPGVKL L  N +MW+ +CAR     T+++L + S+E+   Y  ++P+  RE + RQ
Sbjct:  193 WDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAARVQNGSSSHFENSADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWDAYCARLDDISTQDLLRQTSAEVMRKYRVEHPDYFREEVERQ 331
[Close]
BLAST of mRNA_C-tenellus_contig839.3.1 vs. uniprot
Match: A0A836CQ20_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ20_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.060e-25
Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = 3 
Query:   45 WDVEVELHGEHKVITVQPGDSILESAEMAGLTLSYECRRGNCTSCAAKILHGSSPFVETHAEKRSG-------------TSDPEGYVLTCCSFPVGPGVKLSLGRNPDMWE-DFCARFTQEETREMLSEASSEIRMDYANKYPEELREYLSRQ 461
            W+V  ELHGE   + ++P D+IL++AE+AGL   Y+CRRGNC +CA +    SS  + T   + +G              +  EG+ L+CCS+PVGPG+++ LG   + W+  +C R   E TR    EA ++++  Y+ + P++    L RQ
Sbjct:   11 WEVTFELHGEETTVLMRPDDTILQAAELAGLRAPYDCRRGNCLTCAGRFKAASSYNLVTTLRQEAGGAVTLDSDTFLCDEAKDEGFFLSCCSYPVGPGLRVELGVQKEAWQIQYCDRLRDEATRAAALEAVAQVQRGYSERNPDKFVADLERQ 163
[Close]
BLAST of mRNA_C-tenellus_contig839.3.1 vs. uniprot
Match: A0A4D9D4I2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4I2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.350e-12
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = 3 
Query:   45 WDVEVELHGEHKVITVQPGDSILESAEMAGLTLSYECRRGNCTSCAAKILHGSSPFVETHAEKRSGTSDPEGYVLTCCSFPVGPGVKLSLGRNPDMWEDFCARF 356
            WDV + L+GE K ++V  G S+L++AE A       CR G CT+CAA++  G         E  S      G++L+C ++P GPG+++ L    +++E   A++
Sbjct:   61 WDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKY 164
[Close]
BLAST of mRNA_C-tenellus_contig839.3.1 vs. uniprot
Match: A0A0G4EXA3_VITBC (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EXA3_VITBC)

HSP 1 Score: 72.0 bits (175), Expect = 2.600e-11
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 3 
Query:   45 WDVEVELHGEHKVITVQPGDSILESAEMAGLTLSYECRRGNCTSCAAKILHGS--SPFVETHAEKRSGTSDPEGYVLTCCSFPVGPGVKLSLGRNPDMWEDFCARF 356
            W +E+   G+ + + V  G S+LE+AE        +CR G CTSCA +I+ G     +V         T D +GYVLTC ++  GPG+K+ L +N +++     RF
Sbjct:   20 WTIELNYDGDIETVEVPEGTSVLEAAETVWEDPPCDCRNGVCTSCAGRIVGGKLGEAYVINRDSLEEVTKD-KGYVLTCQTYVCGPGLKVELNKNEEVYGMQYGRF 124
[Close]
BLAST of mRNA_C-tenellus_contig839.3.1 vs. uniprot
Match: A0A0G4EFE2_VITBC (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFE2_VITBC)

HSP 1 Score: 71.2 bits (173), Expect = 1.260e-10
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 3 
Query:   51 VEVELHGEHKVITVQPGDSILESAEMAGLTLSYECRRGNCTSCAAKILHGSSPFVETHAEKRSGTSDPE----GYVLTCCSFPVGPGVKLSL 314
            V+V ++G+   +TV PGDSILE+AE AGL L ++CR G C  C AK++ GS        +   GT D E    GY L C + P+   V + +
Sbjct:   68 VKVSINGDTYDVTVNPGDSILEAAEEAGLELPHDCRLGTCLQCTAKVVSGS-------VDHGMGTLDDEVTEAGYTLACQATPLSDDVHIEI 152
[Close]
BLAST of mRNA_C-tenellus_contig839.3.1 vs. uniprot
Match: A0A7S4F9M2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F9M2_CHRCT)

HSP 1 Score: 68.9 bits (167), Expect = 6.950e-10
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 3 
Query:   45 WDVEVELHGEHKVITVQPGDSILESAEMAGLTLSYECRRGNCTSCAAKILHGSSPFVETHAEKRSGTSDPE--GYVLTCCSFPVGPGVKLSLGRNPDMWE-DFCARF 356
            W V V +  +  V+ V  G  +L + E AGL    +CRRGNC SCAA+I++G+ PF     +  +  S+    G+VL C ++  G G+++ +    ++WE  +  RF
Sbjct:   23 WPVTVHIGRQAHVLRVPEGQPVLLALEAAGLLPGSDCRRGNCLSCAARIINGA-PFSLRVRDNTALCSEAHESGFVLLCSAYVCGKGLEIEVDMEGEVWELQYSKRF 128
[Close]
BLAST of mRNA_C-tenellus_contig839.3.1 vs. uniprot
Match: A0A7S2E031_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E031_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.540e-9
Identity = 45/157 (28.66%), Postives = 82/157 (52.23%), Query Frame = 3 
Query:   42 VWDVEVELHGEHK---VITVQPGDSILESAEMAGLTLSYECRRGNCTSCAAKILHGSSP--------FVETHAEKRSGT-----SDPEGYVLTCCSFPVGPGVKLSLGRNPDMWE-DFCARFTQEETREMLSEASSEIRMDYANKYPEELREYLSRQ 461
            +W V+++L    +   VI V+    +L       L+  +ECRRGNC +CAAK+L GSS         F +   +K   T     +  +G++LTCCS+  GPG+K+++ ++ + ++  +  RF ++  R   + AS+ ++  +A +   E  E +  Q
Sbjct:   22 LWTVDLQLPETEELVPVIAVENTPLLLAMESHGELSPPFECRRGNCLNCAAKLLPGSSQNFDMYLGEFHDMGEDKDRHTFLCEEAKEKGFILTCCSYATGPGLKIAVDKSYEAYQVQYHERFKKKH-RAAATAASAVLQTVWAEENTAEWLEMVENQ 177
[Close]
BLAST of mRNA_C-tenellus_contig839.3.1 vs. uniprot
Match: A0A3M1CK22_9DELT (Ferredoxin n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1CK22_9DELT)

HSP 1 Score: 65.1 bits (157), Expect = 2.680e-9
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 3 
Query:   87 TVQPGDSILESAEMAGLTLSYECRRGNCTSCAAKILHGSSPFVETHAEKRSGTSDPEGYVLTCCSFPVGP 296
            T +PG+++L++AE AGL L Y CR G C SCAA+I+ GS+   E +  +    +   G++L CC+    P
Sbjct:   13 TCEPGETVLDAAERAGLALPYSCRSGGCLSCAARIIEGSAEMDEQYVLEEEHIA--RGFMLLCCTTVTSP 80
[Close]
BLAST of mRNA_C-tenellus_contig839.3.1 vs. uniprot
Match: A0A1X2E1Y3_9MYCO (Ferredoxin n=1 Tax=Mycobacterium sp. IEC1808 TaxID=1743230 RepID=A0A1X2E1Y3_9MYCO)

HSP 1 Score: 64.3 bits (155), Expect = 7.090e-9
Identity = 30/87 (34.48%), Postives = 49/87 (56.32%), Query Frame = 3 
Query:   48 DVEVELHGEHKVITVQPGDSILESAEMAGLTLSYECRRGNCTSCAAKILHGSSPFVETHAEKRSGTSDPEGYVLTCCSFPVGPGVKL 308
            +V +EL      +T  PGD++L++  MAGL+    C  GNC +C A+++ GS+  +   A +       EG+VLTC + P  P V++
Sbjct:   19 EVTIELDRCTITVTYSPGDTLLQTGRMAGLSPPSSCEVGNCGTCMARLVEGSARMINNEALEDDEVE--EGWVLTCQALPTSPTVRV 103
[Close]
BLAST of mRNA_C-tenellus_contig839.3.1 vs. uniprot
Match: D5PGW5_9MYCO (2Fe-2S iron-sulfur cluster binding domain protein n=3 Tax=Mycobacterium TaxID=1763 RepID=D5PGW5_9MYCO)

HSP 1 Score: 63.9 bits (154), Expect = 1.050e-8
Identity = 29/92 (31.52%), Postives = 48/92 (52.17%), Query Frame = 3 
Query:   33 GGMVWDVEVELHGEHKVITVQPGDSILESAEMAGLTLSYECRRGNCTSCAAKILHGSSPFVETHAEKRSGTSDPEGYVLTCCSFPVGPGVKL 308
            G +  +V +EL      ++   GD++L++A MAGL   Y C  G+C +C A++  GS+  +   A       D  G+VLTC + P    V++
Sbjct:   17 GAVTQEVTIELDRRTITVSYSAGDTLLQTARMAGLAAPYSCETGSCATCMARLTQGSARMLNNDALDEDEVGD--GWVLTCQALPTSRAVRV 106
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig839.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRL9_ECTSI3.360e-4152.52Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A836CQ20_9STRA1.060e-2535.952Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A4D9D4I2_9STRA2.350e-1233.652Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A0G4EXA3_VITBC2.600e-1134.912Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A0G4EFE2_VITBC1.260e-1040.222Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S4F9M2_CHRCT6.950e-1033.64Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2E031_9STRA2.540e-928.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3M1CK22_9DELT2.680e-940.00Ferredoxin n=1 Tax=Deltaproteobacteria bacterium T... [more]
A0A1X2E1Y3_9MYCO7.090e-934.48Ferredoxin n=1 Tax=Mycobacterium sp. IEC1808 TaxID... [more]
D5PGW5_9MYCO1.050e-831.522Fe-2S iron-sulfur cluster binding domain protein ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig839contigC-tenellus_contig839:11492..16362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1120965.AUBV01000006_gene2410
Preferred namedmpP
PFAMsFAD_binding_6,Fer2,NAD_binding_1
Model size2493
Max annot lvl976|Bacteroidetes
KEGG rclassRC02690
KEGG koko:K02613
KEGG ReactionR09838
KEGG Pathwayko00360,ko01120,map00360,map01120
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.15e-12
EggNOG OGsCOG1018@1|root,COG1018@2|Bacteria,4NF24@976|Bacteroidetes,47KY6@768503|Cytophagia
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-12_002550.1
DescriptionPFAM 2Fe-2S iron-sulfur cluster binding domain
Cds size468
COG categoryC
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig839.3.1prot_C-tenellus_contig839.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig839 11497..14342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790102.4847534-UTR-C-tenellus_contig839:11491..114961680790102.4847534-UTR-C-tenellus_contig839:11491..11496Choristocarpus tenellus KU2346UTRC-tenellus_contig839 11492..11496 +
1680790102.574795-UTR-C-tenellus_contig839:14342..163621680790102.574795-UTR-C-tenellus_contig839:14342..16362Choristocarpus tenellus KU2346UTRC-tenellus_contig839 14343..16362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790102.513953-CDS-C-tenellus_contig839:11496..116891680790102.513953-CDS-C-tenellus_contig839:11496..11689Choristocarpus tenellus KU2346CDSC-tenellus_contig839 11497..11689 +
1680790102.527312-CDS-C-tenellus_contig839:12153..122121680790102.527312-CDS-C-tenellus_contig839:12153..12212Choristocarpus tenellus KU2346CDSC-tenellus_contig839 12154..12212 +
1680790102.540826-CDS-C-tenellus_contig839:12515..125961680790102.540826-CDS-C-tenellus_contig839:12515..12596Choristocarpus tenellus KU2346CDSC-tenellus_contig839 12516..12596 +
1680790102.5531805-CDS-C-tenellus_contig839:12834..128851680790102.5531805-CDS-C-tenellus_contig839:12834..12885Choristocarpus tenellus KU2346CDSC-tenellus_contig839 12835..12885 +
1680790102.5628984-CDS-C-tenellus_contig839:14258..143421680790102.5628984-CDS-C-tenellus_contig839:14258..14342Choristocarpus tenellus KU2346CDSC-tenellus_contig839 14259..14342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig839.3.1

>prot_C-tenellus_contig839.3.1 ID=prot_C-tenellus_contig839.3.1|Name=mRNA_C-tenellus_contig839.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=156bp
MSMDKLASWGGMVWDVEVELHGEHKVITVQPGDSILESAEMAGLTLSYEC
RRGNCTSCAAKILHGSSPFVETHAEKRSGTSDPEGYVLTCCSFPVGPGVK
LSLGRNPDMWEDFCARFTQEETREMLSEASSEIRMDYANKYPEELREYLS
RQMPE*
back to top

mRNA from alignment at C-tenellus_contig839:11492..16362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig839.3.1 ID=mRNA_C-tenellus_contig839.3.1|Name=mRNA_C-tenellus_contig839.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4871bp|location=Sequence derived from alignment at C-tenellus_contig839:11492..16362+ (Choristocarpus tenellus KU2346)
GAACGATGTCAATGGACAAGTTGGCCTCATGGGGTGGGATGGTATGGGAT
GTGGAGGTAGAATTACATGGGGAGCACAAAGTGATCACAGTGCAGCCAGG
AGATAGCATCCTTGAGTCCGCAGAAATGGCGGGGCTGACCCTGTCTTATG
AATGTCGCAGAGGCAACTGCACCTCGTGTGCAGCAAAGATTTTACACGGT
GAGGATGTTGAGGTTTTCTACGTTCTTGAACCAAACGAACTGTCTATTTC
TATCTTCTTCTGTAAGGCATCTATCTAGATGTTAATTAAGATTCCACATT
TTGTTCAATAACTTGGTGTGGGTAAGTTGTGCCTCAAGTACGGGTGAAAA
GCTTCCAAGGCGAGTCATTTAGACACAATGGGATTCACCTCATCTTTTCC
CACATTTGTCTTCAGCACCATCGTTCTACGGAAAGTAGCGCACTTCACGA
AAATGACCCCTCTACGCCCCCCATTGTCCGATACACATGGCATTAGAATG
TAAGACTTGAAACATACTGTTGCCTTCCTCACCTATTTAGAGTTCTAGAA
CTCAGCTGACCTCTTATTTTTCCTTTTTTAGTGTGTTGAAATGCCCGCTC
ACTTTGCATAATCTACAGTTGTCGCCACCCTACCGTCCCGTTACCACCTG
ACCCCTCACCAGGTTCATCTCCCTTCGTGGAGACACATGCAGAGAAGCGG
TCTGGCACCAGCGATCCAGAGGTACCATACACATTGCTCATATTATGTTT
TTGGAGGTGGCATTGATATCGAGCGTTTGACATACATTGCAATCTTTCTC
TGATGTTACAGGCAGTCCCCTAAAGGCAATGCGACACGGACACACCCGCA
GGGAGGACAGTAACTTGTGTGTTCCATAACATGATGTATTTTACCTAAAC
GGGACTCGGATTGAAGAATGGAAACTGTGATGTACCATCATGGTCCTCCC
CCTTCGTGAATGATTTTTTCTCAGTTTTTTACTGTGCTTCTTGCTGAGTC
AAGTTTTTCAATGTTACCTGTCAGGGCTATGTGCTGACTTGCTGCTCATT
CCCTGTGGGGCCTGGAGTAAAGCTCAGCCTTGGGAGGAACCCAGACATGT
GGGAGGTGAGCATTATCCTTTGCTAGCAGGGTGGCCTATTCTATTCTAGG
GTTGTACTAGGAGGTAGGTGGCTGGTAAAAGAAATCTCCTTGAGCAGCTG
CCTGTAAGGTAAAAACGAGTGCGCAATCTCGTTTGTGGCCACCAACCTGG
CAGTGTTTCTTTGGACTATTTGGATGCCCTACTCACGATGCATAACAAAC
AGTCCTCACTCGATTGTTCATCTACATTTGAATCCATATCCAGGACTTTT
GTGCGCGCTTCACACAGGAGGAGACACGTGAAATGCTGTCAGAGGTGAGC
TACACATCAGCCATTAAACAAGTTTATGCACAACTCTCGACTTTTTTTTA
ACATTGAATTCTTGTACGTATGCCTTGTTTCTGCAGATCAAACATCAATC
TGACATATTAATACTTTACTATGGTACTGATAACAAGGGTTTTGTCCCCT
AGCACACACGGTCATTCTGTTCACGGTTGGAGGATCACATGTGCTATCAC
CTCAAAGAATAAGAAAAGTGGGTTGTTTATCAGTGCTATTGTGATTTTGT
GCCCGTATTCATTTGTGCTTGTATTCTCTGGCAAACAAGTCGCAATGATG
TTTTTCTGTTGTCCACGTGTTTAGTGATGCTGCTGAGAACTGTACATTCA
TGTCATTAAGTGTTACGAACTGCAACAGTTCGGTCGCTCGTCAGTTCAAT
TAATTGAGAATAAGTGATAACTGAACTGAAAAGGTTGGTTATGCAGTTGT
TTTTATGTTTGATCACAGTGGAAGCAGAAGTGTGACTGAATTTGTATCAG
TCAGAGAACCACACAACCTGGCGTGTTTGTCACAAGGTGCCACTACCCAT
AACTCACTATATACACATTCATGGCTTCGGATCTGCTTTAGACCAAAGGC
AACTTTTGTGCGTCCAGAGGGACTCATTCAAGCCAGGGAGTTTTTTTTGC
CTCGTGGTGCCGCACACCACCTGGTGCCTTGCATGCATTTTGCCCTCGGG
GTCTCATGCACCAACAGTTCAATTGAGTTATTCAATTTTTCCCCACCTGA
TTTAATTTTGACTGTAAGTTATTTTAGTTCACGACACTAGTCACATCCCA
TTGGTTCTCCCAGTCTTCTAGGTGTTGATTGACTCGCAGGGTCCAAGTGA
TGTCATTCATGTCAGCCCTATTCAACCCATTGTTCCTATCTGTGCTGAAT
GTAATCCGGTAGATGGGTACGTGCCGGTAAGTGTTGGAAGGTGTCAAGTA
AGTTACTGATTGCAGCTTATCACCTGGTTGATTTAATGGGTTGTTGATGA
GCTCCTTAACCACATTTCTAATACGAGCACCAGGAGCATACTACCCCGTG
CTCAATGGTACTTGCCCTTCTGTTGTCCTAGCGCTCTGATGCACCTGCGT
AGCATGCACCACAAATGGTTCTTCTGTACTAATTTTATTTGAAGGGATTT
GACTGTCATGTTTTGTACTCCAATACCTTTTGTTGTGCTGCTTGAACTGT
CCTGTTTACCCTTCATCTATTGGCATTATGCTGTGAGCACAAGAGTCCGC
ATTATGACAGAAGGGTTCAATCATACAAAGATTATGCATGTGTCAAGCTC
TCTGCTCATCCCCAATCATATATCACCTGCTATCCTTCCACGCTTGTTGT
ACTTGATCCTGTTCCAGGCAAGCTCTGAAATCCGGATGGATTATGCAAAT
AAATATCCAGAGGAATTGAGAGAGTATCTTTCGCGACAGATGCCCGAGTA
AAGTATAGCTATAACTATTTGGAAAGTTCCAGTATAATGTTTTGCTCGAG
GTACGAAAGCCCCAGGAAATTGCTAGGTGCCTTGGTCTGTGTGGATTGTG
GACTGTATTTTACCGTCAGCAAGGGAACTTTGTGGTAATCATTCCTAGGT
GCATTGCATCATATGGTGCAGTGTGGAAGGGTATTGATCCCTTGTTGCCT
TGGCAACACAGTAGGGTGTTGCTAATATTTTATGGTGAGGGTGTGGAAGA
TGCAAGAAGGCACCAAGACTAAGGGATGTTAAGGCTTATGGAGAAGACAA
TGTGCTGAATTCAGGTTTTCCTAACACTACTTTCTGATTTCCCTGTGGTA
GTGATCTCCCTTTCCCCCTGGCACAATTTTATGCGTGATATAGGTTTGTA
CAGTGTTTTAGGAGCCAGGTTCTCTGTGGTTTGTTAGGTATTTTGCCATA
GATGAAGTCAGTTTCTCATCTAATCTTGGTCGACATGGCGTTGTGATACA
TTTTAGATATACATGTGTGTTCAAAAAGTTAAATAATCTCTCCAGAAAAC
TTGAGCCGCGACAATAATGAACTATGCCATGGTTTTTGTCTCTGCAACTT
TCCAAATCATTTACCATAGTACTCCCCTGGTATCTTTTTATCAACTGCTG
AACACAGGAGAGATGTATGCTATTAACTTCCGCTTACAAGAGATTGTGTG
TTGGGTATAGTGTGTGCTGTGAGCTGTGATATGAAATATGGACAGCTATG
TGTAATACAAAATTTCCTAAGATGTGTGTTTGAGTGTGTGTCTGTATGCT
TGTGTTCATGGTAGAAGCCTGATATTATCAAATTTCAAATTTTAAATAAG
AGTGGTGATCCGATCTTGGTTTATCCACAATCATGATAGTACTGGGCCCC
ATTCAACACCTGGTCTAAGCTGTATCACTTTATTGGCTGTAGTGTACATG
TTGTGGGACCTACTTCGAGTGGGTTGTTGGGGGTGAGATGTAGGTCAGTG
GTCTGTGGGGGGAGTATGCTTGGCTGCATCATTATCCTCATGTTGGAATG
GCGGTTTCTGGGGTACAATACACATGTCTTACCTTCAAGCAAACCTTCAT
AGACATCCAGTATCAGGAATAGGTCTTGTTTTTATTTTTATTTAATAATT
GGTGTTATACTTCCTCCACTCGGAATTTAATGTAACATAACTTTTGCAAC
GTCTGTTCTCGCCTGGGAACGACCTGCGTGTATAAACCCTGTGGACAAGG
CTTACTTCTCATATAGATTGGGAGGCGTGCAAAGTTTGAGATAGTGGGCT
GTCATGACTGTGAAGGATCACCAGGGCAAAGTCGACCAAGTCATATTGGT
CAGGTTCAAAAACTTCATGAAACTGTCAAAGCGAGTGATTATTGGGATGC
CTAGGACAAATGCTTGCTCATCCCATCACCCCCTACTGGTCCCAATTCTT
CAGTCCAGAAGTCTGCTGGAGTCAGGACTCAAACACCCCGACAAAGAACA
GCGTGGTGGCGTGATGCCTAGAGGCAAGAGGGCGTGAGCTGCCTCAGGGG
GTGGCAATGACCATCATGGAGGACTTTGGAATTTCCCGCACAGGGGTGCT
TGGTCATCTGAAGGAGTATGGCAGCCAGACTGTAGGGTAAATGCAAGTAC
CTTTTATGACGTCACAAGGGCCAATGTGTGTCCGCCATATACAACTATCC
CTGACATTTGGGATGTCCCATTGGTACACCACACATCCTTCTCCAAACGG
GTGACCAAAGCTGGGGTCTCCCTTGCCTCATTGTGGGATCCATGCAAGTG
TGACAAGGTGAAGAAGGTCAAGCAGTGGATTAGGCCAGTCCTCTCAGACC
AGTAGAAAGTCAACAGGGTGGGTTTTGTCGTCGGCTGCACTCGCAGTAGG
GGGAAAAGTGTGGTTTTTGTGGACGATCTGTATGACTGTGTGTGAGGATG
AGAAGTGGTTTTAAGTACTCAAAGATGGGCAAGGTGTCTACCTCCACCCC
CATTAAGGACCCCCTAACACC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig839:11492..16362+

>mRNA_C-tenellus_contig839.3.1 ID=mRNA_C-tenellus_contig839.3.1|Name=mRNA_C-tenellus_contig839.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=468bp|location=Sequence derived from alignment at C-tenellus_contig839:11492..16362+ (Choristocarpus tenellus KU2346)
ATGTCAATGGACAAGTTGGCCTCATGGGGTGGGATGGTATGGGATGTGGA
GGTAGAATTACATGGGGAGCACAAAGTGATCACAGTGCAGCCAGGAGATA
GCATCCTTGAGTCCGCAGAAATGGCGGGGCTGACCCTGTCTTATGAATGT
CGCAGAGGCAACTGCACCTCGTGTGCAGCAAAGATTTTACACGGTTCATC
TCCCTTCGTGGAGACACATGCAGAGAAGCGGTCTGGCACCAGCGATCCAG
AGGGCTATGTGCTGACTTGCTGCTCATTCCCTGTGGGGCCTGGAGTAAAG
CTCAGCCTTGGGAGGAACCCAGACATGTGGGAGGACTTTTGTGCGCGCTT
CACACAGGAGGAGACACGTGAAATGCTGTCAGAGGCAAGCTCTGAAATCC
GGATGGATTATGCAAATAAATATCCAGAGGAATTGAGAGAGTATCTTTCG
CGACAGATGCCCGAGTAA
back to top