mRNA_C-tenellus_contig8389.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8389.3.1
Unique NamemRNA_C-tenellus_contig8389.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8389.3.1 vs. uniprot
Match: A0A836CB09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB09_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.910e-45
Identity = 71/131 (54.20%), Postives = 93/131 (70.99%), Query Frame = 1
Query:    1 INQVLLFHAIVAIVVGGLAFIIPHSLVDALFSTKYDHFVHELARMYGALTLAQGWVVFKMRTFGDGRIRRCISETFCIAYGLQAVALLRAQIAEPRSHTIFNTLGWISFASLSTFYGYCRWYKTIKVFELP 393
            +N+VL +HAI++IVVGG+AF +PH L + L+  +  H +HE+ RMYGALTLAQGW+    R  GD R++R +SE + ++YGLQ +AL RAQ   P SHT  N  G   FASLS FY Y RW +TIK+FELP
Sbjct:   19 VNKVLQYHAIISIVVGGIAFFLPHGLANTLYGGELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELP 149          
BLAST of mRNA_C-tenellus_contig8389.3.1 vs. uniprot
Match: A0A397DN74_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DN74_9STRA)

HSP 1 Score: 139 bits (351), Expect = 6.480e-40
Identity = 64/131 (48.85%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    4 NQVLLFHAIVAIVVGGLAFIIPHSL-VDALFSTKYDHFVHELARMYGALTLAQGWVVFKMRTFGDGRIRRCISETFCIAYGLQAVALLRAQIAEPRSHTIFNTLGWISFASLSTFYGYCRWYKTIKVFELP 393
            + + + HA +AI++GG  F++PHSL V  L  ++Y H VHE+ R+YGALTLAQGW+V+K R  GDG +R+   + +C+ + LQA+AL+RAQ++ P SH++ N +  I  A L T YGY   +KTIK FELP
Sbjct:    9 DTLFIVHACIAIIIGGACFLLPHSLAVSVLGGSEYGHLVHEVVRLYGALTLAQGWLVWKTRLVGDGLVRKTFCQAYCLCFTLQALALVRAQVSSPESHSVLNWINIIVLAGLGTAYGYFIVFKTIKAFELP 139          
BLAST of mRNA_C-tenellus_contig8389.3.1 vs. uniprot
Match: A0A6G0WDL0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDL0_9STRA)

HSP 1 Score: 137 bits (344), Expect = 7.480e-39
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = 1
Query:   22 HAIVAIVVGGLAFIIPHSL-VDALFSTKYDHFVHELARMYGALTLAQGWVVFKMRTFGDGRIRRCISETFCIAYGLQAVALLRAQIAEPRSHTIFNTLGWISFASLSTFYGYCRWYKTIKVFELP 393
            HA ++IV+G    ++PHSL + AL +T+Y H VHE+ R+YGALTLAQGW+V+K R  GDG IR+   + +C+ + LQA+A+LRAQI+ P SH++ N +  +  A L   YGY  ++KTIK FELP
Sbjct:   15 HAGISIVIGAACLLLPHSLAMSALKTTEYSHLVHEMVRLYGALTLAQGWLVWKTRLVGDGLIRKTFCQAYCLCFSLQAIAMLRAQISSPESHSVLNWINILVLAGLGGAYGYFLFFKTIKAFELP 139          
BLAST of mRNA_C-tenellus_contig8389.3.1 vs. uniprot
Match: A0A024TE78_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TE78_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.160e-37
Identity = 64/131 (48.85%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    4 NQVLLFHAIVAIVVGGLAFIIPHSL-VDALFSTKYDHFVHELARMYGALTLAQGWVVFKMRTFGDGRIRRCISETFCIAYGLQAVALLRAQIAEPRSHTIFNTLGWISFASLSTFYGYCRWYKTIKVFELP 393
            + + + HA +AIV+GG   ++PHSL + AL +++Y H VHE+ R+YGALTLAQGW+V+K R  GD  IR+   + +C+ + LQA AL+RAQ++ P SH++ N +  I  A+L   YGY   +KTIKVFELP
Sbjct:   28 DTLFIVHAGIAIVIGGSCLVLPHSLAMSALGASEYGHLVHEVVRLYGALTLAQGWLVWKTRLVGDALIRKTFCQAYCLCFLLQAAALVRAQVSSPESHSVLNWVNIIVLAALGAAYGYFVVFKTIKVFELP 158          
BLAST of mRNA_C-tenellus_contig8389.3.1 vs. uniprot
Match: A0A485KNP7_9STRA (Aste57867_9606 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNP7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.090e-36
Identity = 60/125 (48.00%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   22 HAIVAIVVGGLAFIIPHSL-VDALFSTKYDHFVHELARMYGALTLAQGWVVFKMRTFGDGRIRRCISETFCIAYGLQAVALLRAQIAEPRSHTIFNTLGWISFASLSTFYGYCRWYKTIKVFELP 393
            HA ++ ++GG  F++PHSL ++AL +  Y H  HE+ R+YGALTLAQGW+V+  R  GDG IR+   + +C+ + LQA+A+LRAQ++ P SH++ N L     A L   YGY   +KTIK FELP
Sbjct:   18 HAAISTLIGGACFLLPHSLAMEALRTPDYSHLAHEMVRLYGALTLAQGWLVWNTRLVGDGLIRKTFCQAYCLCFSLQALAMLRAQVSSPESHSVLNWLNIFILAGLGIAYGYFLAFKTIKAFELP 142          
BLAST of mRNA_C-tenellus_contig8389.3.1 vs. uniprot
Match: A0A067D0E8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D0E8_SAPPC)

HSP 1 Score: 127 bits (319), Expect = 5.540e-35
Identity = 58/128 (45.31%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   22 HAIVAIVVGGLAFIIPHSLVDALFST-KYDHFVHELARMYGALTLAQGWVVFKMRTFGDGRIRRCISETFCIAYGLQAVALLRAQIAEPRSHTIFNTLGWISFASLSTFYGYCRWYKTIKVFELPGTR 402
            HA ++IV+G    ++PHSL  A   T +Y H VHE+ R+YGALTLAQGW+V+K R  GD  IR+   + +C+ + LQ++A+ RAQ+A P SH++ N +  +  A L   YGY   +KT K FELP  +
Sbjct:   15 HASISIVIGSACLLLPHSLAMAALQTPQYGHLVHEMVRLYGALTLAQGWLVWKTRLVGDALIRKTFCQAYCLCFSLQSLAMFRAQVASPESHSLLNWINILVLAGLGAAYGYFLAFKTAKAFELPSMK 142          
BLAST of mRNA_C-tenellus_contig8389.3.1 vs. uniprot
Match: A0A2D4BJM1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJM1_PYTIN)

HSP 1 Score: 124 bits (310), Expect = 1.320e-33
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 1
Query:    4 NQVLLFHAIVAIVVGGLAFIIPHS-LVDALFSTKYDHFVHELARMYGALTLAQGWVVFKMRTFGDGRIRRCISETFCIAYGLQAVALLRAQIAEPRSHTIFNTLGWISFASLSTFYGYCRWYKTIKVFELPG 396
            +Q+   HA++AIV G L F  PHS L   L      HF HE  R+YGALTLAQGW+V++ R   D  IRR   + +CI + LQ++ALLRAQ++ P SH+I + L  +    L   YGY   +KTIK FELPG
Sbjct:    9 DQLFTAHAVIAIVSGALCFFTPHSHLSPILGDANNTHFAHEFIRLYGALTLAQGWLVWRTRLVSDALIRRTFCQAYCICFCLQSLALLRAQLSAPESHSILHWLNILILGGLGLAYGYFLVFKTIKAFELPG 140          
BLAST of mRNA_C-tenellus_contig8389.3.1 vs. uniprot
Match: A0A1V9ZH25_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZH25_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.870e-33
Identity = 55/128 (42.97%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   22 HAIVAIVVGGLAFIIPHSL-VDALFSTKYDHFVHELARMYGALTLAQGWVVFKMRTFGDGRIRRCISETFCIAYGLQAVALLRAQIAEPRSHTIFNTLGWISFASLSTFYGYCRWYKTIKVFELPGTR 402
            HA ++ V+GG   ++PHSL + AL +  Y H VHE+ R+YGALT AQGW+V+K R   D  +R+   + +C+ + LQ++A+LRAQ++ P SH++ N +  +  A L   YGY   +KT+K FELP  +
Sbjct:   15 HATISTVIGGACLLLPHSLAMSALQTPLYGHLVHEMVRLYGALTAAQGWLVWKTRLVSDPIVRKTFCQAYCLCFSLQSLAMLRAQVSSPESHSMLNWINILVLAGLGAAYGYFLLFKTVKAFELPSMK 142          
BLAST of mRNA_C-tenellus_contig8389.3.1 vs. uniprot
Match: W2G8X2_PHYPR (Uncharacterized protein n=15 Tax=Peronosporaceae TaxID=4777 RepID=W2G8X2_PHYPR)

HSP 1 Score: 123 bits (308), Expect = 2.650e-33
Identity = 60/126 (47.62%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   22 HAIVAIVVGGLAFIIPHSLVDALFSTKYD-HFVHELARMYGALTLAQGWVVFKMRTFGDGRIRRCISETFCIAYGLQAVALLRAQIAEPRSHTIFNTLGWISFASLSTFYGYCRWYKTIKVFELPG 396
            H ++A+V G L F+ PHSL+  +     + H  HE  R+YGALTLAQGW+V++ R   D  IRR   + +CI + LQAVALLRAQIA P SH++ + +  +    L   YGY   +KTIK FELPG
Sbjct:   15 HMVIAVVTGALCFLTPHSLMAPMLGDGNNTHMAHEFVRLYGALTLAQGWMVWRTRLVSDALIRRTFCQAYCICFLLQAVALLRAQIASPESHSMLHWINILLLGGLGCAYGYFLVFKTIKAFELPG 140          
BLAST of mRNA_C-tenellus_contig8389.3.1 vs. uniprot
Match: G4YMX6_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YMX6_PHYSP)

HSP 1 Score: 122 bits (307), Expect = 3.870e-33
Identity = 59/127 (46.46%), Postives = 81/127 (63.78%), Query Frame = 1
Query:   22 HAIVAIVVGGLAFIIPHSLVDALF--STKYDHFVHELARMYGALTLAQGWVVFKMRTFGDGRIRRCISETFCIAYGLQAVALLRAQIAEPRSHTIFNTLGWISFASLSTFYGYCRWYKTIKVFELPG 396
            H ++A+V G L F+ PHSL+  +   ++   H  HE  R+YGALTLAQGW+V++ R   D  IRR   + +CI + LQAVALLRAQ+A P SH++ + +  +    L   YGY   +KTIK FELPG
Sbjct:   15 HMVIAVVTGALCFLTPHSLMTPMLGDASNDTHLAHEFVRLYGALTLAQGWMVWRTRLVSDALIRRTFCQAYCICFLLQAVALLRAQLASPESHSMLHWVNILLLGGLGCAYGYFLVFKTIKAFELPG 141          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8389.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A836CB09_9STRA1.910e-4554.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A397DN74_9STRA6.480e-4048.85Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0WDL0_9STRA7.480e-3950.40Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TE78_9STRA2.160e-3748.85Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485KNP7_9STRA1.090e-3648.00Aste57867_9606 protein n=1 Tax=Aphanomyces stellat... [more]
A0A067D0E8_SAPPC5.540e-3545.31Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4BJM1_PYTIN1.320e-3347.73Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1V9ZH25_9STRA1.870e-3342.97Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W2G8X2_PHYPR2.650e-3347.62Uncharacterized protein n=15 Tax=Peronosporaceae T... [more]
G4YMX6_PHYSP3.870e-3346.46Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8389contigC-tenellus_contig8389:3152..4212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog157072.XP_008879518.1
Model size420
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue3.54e-38
EggNOG OGs2AWIT@1|root,2RZYW@2759|Eukaryota
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790102.346655-CDS-C-tenellus_contig8389:3151..34121680790102.346655-CDS-C-tenellus_contig8389:3151..3412Choristocarpus tenellus KU2346CDSC-tenellus_contig8389 3152..3412 -
1680790102.3580763-CDS-C-tenellus_contig8389:3812..39211680790102.3580763-CDS-C-tenellus_contig8389:3812..3921Choristocarpus tenellus KU2346CDSC-tenellus_contig8389 3813..3921 -
1680790102.3674896-CDS-C-tenellus_contig8389:4162..42121680790102.3674896-CDS-C-tenellus_contig8389:4162..4212Choristocarpus tenellus KU2346CDSC-tenellus_contig8389 4163..4212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8389.3.1prot_C-tenellus_contig8389.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8389 3152..4212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8389.3.1

>prot_C-tenellus_contig8389.3.1 ID=prot_C-tenellus_contig8389.3.1|Name=mRNA_C-tenellus_contig8389.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=140bp
INQVLLFHAIVAIVVGGLAFIIPHSLVDALFSTKYDHFVHELARMYGALT
LAQGWVVFKMRTFGDGRIRRCISETFCIAYGLQAVALLRAQIAEPRSHTI
FNTLGWISFASLSTFYGYCRWYKTIKVFELPGTRDQDEL*
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mRNA from alignment at C-tenellus_contig8389:3152..4212-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8389.3.1 ID=mRNA_C-tenellus_contig8389.3.1|Name=mRNA_C-tenellus_contig8389.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1061bp|location=Sequence derived from alignment at C-tenellus_contig8389:3152..4212- (Choristocarpus tenellus KU2346)
ATCAATCAAGTTCTTCTGTTTCATGCAATTGTTGCAATTGTCGTTGGAGG GTGAGCCTCTTGGACACCATTTCTCGACGGCTCTGTGTCATTATTTAATT ACCACCTCCATGAAGGTTCATGCCCCTTTCCAAGTCATTCTTTGCCTTAG CTTGAAGAAATTATTTGAAATTGTGTCCGCTTGTGTGTGGCTTCAACTCG ATTCGACAAAGAGTGCCCAAGTTCATCTGGGATTCCTTTCAATTTTTTTG AAATATGAACCGCAACCACGTGCCCTCCCTCTTACCTGTAGGCTGGCTTT CATAATTCCTCATTCGCTAGTGGACGCGCTGTTTAGTACGAAGTACGACC ACTTTGTACACGAACTCGCTAGAATGTACGGCGCATTGACACTGGCACAG GTGAGCATGCCTTGGAGGTCCTGCGAATGTTCCTGTAACTACGATCCTCT GTAGGAATTTTTTATCACTTTAAACCCTAGTGCAGATTTGGAACGTGACG TAGGGTCTATTTATTGTGTGTTAAATGTCTTGTGTGTAAGATACTGGTAT CGATCGACCAGATAATTAGGATAATGAAATGCCCCCGAGCGATAGGCCAC GAGGTTAGAACCACCCTGTCAGAAATAGCAAGGTCAATTCACCGGCGTAA TTGCAAGCACGTGTATTCCCTCAAGGACAAATTACACACTTATTGTAGCA TATTTTACGTACATGCACGTGCCCGTTCTCACGAAAACGCACCGTCCCTT CAACACCCTCCTTGGCACTATCCTCGTCTTCTCATCTGGGTTACCACAAG GGATGGGTAGTTTTTAAGATGCGCACGTTCGGAGATGGTCGCATACGCCG GTGTATCAGCGAGACATTCTGCATTGCATACGGTCTGCAGGCTGTGGCCT TGCTACGGGCCCAAATAGCAGAGCCAAGGAGTCACACCATCTTCAACACC TTGGGCTGGATATCATTTGCATCCCTTTCCACCTTTTATGGCTACTGCCG CTGGTATAAGACAATTAAAGTCTTTGAGCTGCCAGGAACAAGAGATCAAG ATGAATTATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig8389:3152..4212-

>mRNA_C-tenellus_contig8389.3.1 ID=mRNA_C-tenellus_contig8389.3.1|Name=mRNA_C-tenellus_contig8389.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=420bp|location=Sequence derived from alignment at C-tenellus_contig8389:3152..4212- (Choristocarpus tenellus KU2346)
ATCAATCAAGTTCTTCTGTTTCATGCAATTGTTGCAATTGTCGTTGGAGG
GCTGGCTTTCATAATTCCTCATTCGCTAGTGGACGCGCTGTTTAGTACGA
AGTACGACCACTTTGTACACGAACTCGCTAGAATGTACGGCGCATTGACA
CTGGCACAGGGATGGGTAGTTTTTAAGATGCGCACGTTCGGAGATGGTCG
CATACGCCGGTGTATCAGCGAGACATTCTGCATTGCATACGGTCTGCAGG
CTGTGGCCTTGCTACGGGCCCAAATAGCAGAGCCAAGGAGTCACACCATC
TTCAACACCTTGGGCTGGATATCATTTGCATCCCTTTCCACCTTTTATGG
CTACTGCCGCTGGTATAAGACAATTAAAGTCTTTGAGCTGCCAGGAACAA
GAGATCAAGATGAATTATGA
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