mRNA_C-tenellus_contig8389.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8389.2.1
Unique NamemRNA_C-tenellus_contig8389.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8389.2.1 vs. uniprot
Match: D7FMW6_ECTSI (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW6_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 3.750e-41
Identity = 69/95 (72.63%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:    1 VLSAGMLLCSSNEDHSKVEPLAPPSGCAVGELVTFEGHLSSPVEAGNRAGKAWKRVASNLKVSEDKVANFAGEKLPAPFMTSAGPVTSSLPGGIS 285
            V SAGMLLCSSNEDHSKVEPL PP G  +GELVTF+GHL SPV+AGNRAGKAWKR +  L V + + A F GEKLPA FMTS GP+TS LPG IS
Sbjct:  164 VTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAWKRASKTLAVDDSEEAKFTGEKLPATFMTSKGPITSPLPGSIS 258
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BLAST of mRNA_C-tenellus_contig8389.2.1 vs. uniprot
Match: A0A835YNH3_9STRA (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.490e-35
Identity = 64/95 (67.37%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    1 VLSAGMLLCSSNEDHSKVEPLAPPSGCAVGELVTFEGHLSSPVEAGNRAGKAWKRVASNLKVSEDKVANFAGEKLPAPFMTSAGPVTSSLPGGIS 285
            V SAGM+LCSSN DH++V PL PP G  +GELVTFEGHL++PVEAGNRA KAWK+VA  + V ED VA F  E LPA F TS G VTS LPG IS
Sbjct:  150 VESAGMVLCSSNADHTQVAPLVPPEGTPLGELVTFEGHLAAPVEAGNRAVKAWKKVAKTVAVGEDGVARFTDEALPAAFATSKGVVTSPLPGNIS 244
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BLAST of mRNA_C-tenellus_contig8389.2.1 vs. uniprot
Match: W7U6C4_9STRA (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.720e-27
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:    1 VLSAGMLLCSSNEDHSKVEPLAPPSGCAVGELVTFEGHLSSPVEAGNRAGKAWKRVASNLKVSEDKVANFAGEKLPAPFMTSAGPVTSSLPGGIS 285
            + S GMLLC+SNEDH+ V+PL+PP G A+GEL+TFEGH ++P   GNRAGKA+ RVA  L   ED +A + G     PFMTS GPVT+ + G IS
Sbjct:  270 ITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKG----IPFMTSKGPVTTGMAGSIS 360
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BLAST of mRNA_C-tenellus_contig8389.2.1 vs. uniprot
Match: A0A7S1P0A4_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1P0A4_9ALVE)

HSP 1 Score: 101 bits (252), Expect = 4.880e-26
Identity = 53/95 (55.79%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 VLSAGMLLCSSNEDHSKVEPLAPPSGCAVGELVTFEGHLSSPVEAGNRAGKAWKRVASNLKVSEDKVANFAGEKLPAPFMTSAGPVTSSLPGGIS 285
            + S GMLLCSS+ D ++V PL+PP G A+GELVTF+G  S PV  GN+AGKA+ RVA +L V E  VA F       PF TSAG  TS +PG IS
Sbjct:   15 IKSEGMLLCSSSPDGTRVAPLSPPEGAALGELVTFDGWASEPVAPGNKAGKAFDRVAEDLSVGEQGVATFRS----VPFQTSAGACTSEIPGKIS 105
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BLAST of mRNA_C-tenellus_contig8389.2.1 vs. uniprot
Match: A0A7S0XDL6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.490e-23
Identity = 48/95 (50.53%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    1 VLSAGMLLCSSNEDHSKVEPLAPPSGCAVGELVTFEGHLSSPVEAGNRAGKAWKRVASNLKVSEDKVANFAGEKLPAPFMTSAGPVTSSLPGGIS 285
            + S GM+LC++++D +KV+PL PP    +G+L+TFEGHLS PVE GNRA KA+ ++A    V+E  VA + G     PF T  GPVTS+L G IS
Sbjct:  125 ITSNGMVLCTTSKDETKVDPLIPPPDAPIGQLITFEGHLSEPVEPGNRATKAFTKIADGFYVNEQGVATYNG----IPFSTPNGPVTSTLIGKIS 215
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BLAST of mRNA_C-tenellus_contig8389.2.1 vs. uniprot
Match: A0A7S0FZY8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY8_9RHOD)

HSP 1 Score: 97.8 bits (242), Expect = 1.190e-22
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    1 VLSAGMLLCSSNEDHSKVEPLAPPSGCAVGELVTFEGHLSSPVEAGNRAGKAWKRVASNLKVSEDKVANFAGEKLPAPFMTSAGPVTS--SLPGGIS 285
            ++S GMLLC+SN DHS+V+PL+PP  C  GEL+TF+GH S+P++ GNRA KA+ RVA +L  +ED +A +      A F T  GP  S   L GG+S
Sbjct:  198 IISQGMLLCASNADHSEVDPLSPPEECGNGELITFDGHKSAPIDPGNRATKAFDRVADDLSTNEDGIAQYQD----AAFKTPFGPCYSPRKLVGGVS 290
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BLAST of mRNA_C-tenellus_contig8389.2.1 vs. uniprot
Match: A0A7S3M138_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M138_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.360e-22
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    7 SAGMLLCSSNEDHSKVEPLAPPSGCAVGELVTFEGHLSSPVEAGNRAGKAWKRVASNLKVSEDKVANFAGEKLPAPFMTSAGPVTSSL 270
            S GMLLCSSN+   KVEPL PP+G   GELV+FEGH+  P E GNRA KA+ +V+ +  VS+  +A + G     PFMTS GP+TS++
Sbjct:  146 SQGMLLCSSNKADGKVEPLIPPAGVPAGELVSFEGHVIKPEEPGNRATKAYTKVSGDFVVSDSGIATYKG----IPFMTSKGPITSTI 229
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BLAST of mRNA_C-tenellus_contig8389.2.1 vs. uniprot
Match: A0A7S2R5F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5F0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.600e-22
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:    1 VLSAGMLLCSSNEDHSKVEPLAPPSGCAVGELVTFEGHLSSPVEAGNRAGKAWKRVASNLKVSEDKVANFAGEKLPAPFMTSAGPVTSSLPGGI 282
            V S GM+LC+S+ +H+ V+ + PP+G A GELVTF+GHL++PV+AGNRA KA+K+VA   K  +   A F GE   + F TS+GP TS +  G+
Sbjct:  145 VPSNGMVLCASDAEHTDVQLVVPPAGVAAGELVTFDGHLAAPVDAGNRAVKAFKKVAGLFKTDDSGAAVFTGEPASS-FQTSSGPCTSPISNGV 237
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BLAST of mRNA_C-tenellus_contig8389.2.1 vs. uniprot
Match: A0A1X6NL47_PORUM (tRNA-binding domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NL47_PORUM)

HSP 1 Score: 90.5 bits (223), Expect = 1.180e-21
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 VLSAGMLLCSSNEDHSKVEPLAPPSGCAVGELVTFEGHLSSPVEAGNRAGKAWKRVASNLKVSEDKVANF---AGEKLPAPFMTSAGPVTS 264
            V SAGMLLC+S+     VEPLAPP G A+G+LVTFEGH S+PV  GNRA KA+ RV + L+ +++ VA +    G   P PF  + G V S
Sbjct:    4 VASAGMLLCASDGGKGAVEPLAPPDGAALGDLVTFEGHASAPVAPGNRASKAFDRVVAGLRTTDEGVAVYEAPGGGAPPVPFAVAGGVVVS 94
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BLAST of mRNA_C-tenellus_contig8389.2.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 94.0 bits (232), Expect = 1.230e-21
Identity = 48/97 (49.48%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 VLSAGMLLCSSNEDHSKVEPLAPPSGCAVGELVTFEGHLSSPVEAGNRAGKAWKRVASNLKVSEDKVANFAGEKLPAPFMTSAGPVTS--SLPGGIS 285
            + S GMLLC+SNEDH+KV+PL  P   A+G L+TFEGH ++P++AGNRA KA+ +VAS      D +A F       PFMT AG   S   L G +S
Sbjct:  140 IKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDADGIARFNA----TPFMTEAGACYSPAKLQGSVS 232
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8389.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMW6_ECTSI3.750e-4172.63Endothelial monocyte-activating polypeptide II pro... [more]
A0A835YNH3_9STRA5.490e-3567.37Endothelial monocyte-activating polypeptide II pro... [more]
W7U6C4_9STRA2.720e-2756.84Endothelial monocyte-activating polypeptide ii pro... [more]
A0A7S1P0A4_9ALVE4.880e-2655.79Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A7S0XDL6_9STRA5.490e-2350.53Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S0FZY8_9RHOD1.190e-2250.52Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3M138_9STRA2.360e-2253.41Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S2R5F0_9STRA3.600e-2250.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1X6NL47_PORUM1.180e-2151.65tRNA-binding domain-containing protein n=1 Tax=Por... [more]
A0A7S0ZE83_9RHOD1.230e-2149.48Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8389contigC-tenellus_contig8389:1059..1849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMW6
Preferred nameYARS
PFAMstRNA-synt_1b,tRNA_bind
Model size288
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
Exons2
Evalue2.57e-39
EggNOG OGsCOG0143@1|root,KOG2241@2759|Eukaryota
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-09_002760.1
EC6.1.1.1
DescriptiontRNA binding
Cds size273
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790102.282636-UTR-C-tenellus_contig8389:1058..10731680790102.282636-UTR-C-tenellus_contig8389:1058..1073Choristocarpus tenellus KU2346UTRC-tenellus_contig8389 1059..1073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790102.3010263-CDS-C-tenellus_contig8389:1073..12561680790102.3010263-CDS-C-tenellus_contig8389:1073..1256Choristocarpus tenellus KU2346CDSC-tenellus_contig8389 1074..1256 +
1680790102.311261-CDS-C-tenellus_contig8389:1759..18491680790102.311261-CDS-C-tenellus_contig8389:1759..1849Choristocarpus tenellus KU2346CDSC-tenellus_contig8389 1760..1849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8389.2.1prot_C-tenellus_contig8389.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8389 1074..1849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8389.2.1

>prot_C-tenellus_contig8389.2.1 ID=prot_C-tenellus_contig8389.2.1|Name=mRNA_C-tenellus_contig8389.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=91bp
MLLCSSNEDHSKVEPLAPPSGCAVGELVTFEGHLSSPVEAGNRAGKAWKR
VASNLKVSEDKVANFAGEKLPAPFMTSAGPVTSSLPGGIS*
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mRNA from alignment at C-tenellus_contig8389:1059..1849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8389.2.1 ID=mRNA_C-tenellus_contig8389.2.1|Name=mRNA_C-tenellus_contig8389.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=791bp|location=Sequence derived from alignment at C-tenellus_contig8389:1059..1849+ (Choristocarpus tenellus KU2346)
GTGCTCTCTGCAGGTATGCTGCTGTGTTCAAGTAATGAAGACCACAGCAA
GGTGGAGCCCCTGGCACCTCCCTCTGGTTGTGCTGTGGGTGAGCTGGTGA
CCTTCGAGGGGCATCTGTCTTCGCCTGTGGAAGCAGGAAACAGGGCAGGC
AAGGCATGGAAGAGGGTGGCAAGCAACCTCAAGGTGTCAGAGGATAAGGT
GGGTGCCGTTTAACAATCAAGATGGACTTAGGATTTTTGAGTGTAGTGTA
AGTGGAGTTTTGGGTTTTGAGAGTGGGAAGCATTGTTAGGTTCGGCTGGG
CCTGTGTAAAATTGTATTGATAATAGTGGAAGGGTGTGAAGTGCTCTGTG
AGTTCGAACACTGGGAATTGAGAGTGGAAGGGGTGTTGGGTAGGAAATGA
ATTGAATTTTGAGTCGAGGGTGTTCTGTCAGATGTGTTTGTGTTGTTGGT
GTATGGGAAGGTGTACGTACACAAATGTGGATAGGATGTTGTCAGATGGG
CACACTCTTGACTAGTCTTATTGAACTTGTTCATGGCATAGTCTGAAGGC
ACCTTTCGATTGACTGATTGATTGATTGATTGTTCACTCTCCTCTGCAAC
AGGCGTGTTCCGTCTTTTTTTTAATCTGTACCCTAAATAAATAAAGTTTT
TTTTTTAATGGGCGCTTCAGCAATATAACCCAACTCTTGCTATTGGTGCA
GGTGGCAAATTTTGCTGGGGAGAAATTGCCTGCACCCTTCATGACCTCAG
CTGGGCCAGTGACTTCCTCTCTTCCTGGGGGGATATCATAG
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Coding sequence (CDS) from alignment at C-tenellus_contig8389:1059..1849+

>mRNA_C-tenellus_contig8389.2.1 ID=mRNA_C-tenellus_contig8389.2.1|Name=mRNA_C-tenellus_contig8389.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=273bp|location=Sequence derived from alignment at C-tenellus_contig8389:1059..1849+ (Choristocarpus tenellus KU2346)
ATGCTGCTGTGTTCAAGTAATGAAGACCACAGCAAGGTGGAGCCCCTGGC
ACCTCCCTCTGGTTGTGCTGTGGGTGAGCTGGTGACCTTCGAGGGGCATC
TGTCTTCGCCTGTGGAAGCAGGAAACAGGGCAGGCAAGGCATGGAAGAGG
GTGGCAAGCAACCTCAAGGTGTCAGAGGATAAGGTGGCAAATTTTGCTGG
GGAGAAATTGCCTGCACCCTTCATGACCTCAGCTGGGCCAGTGACTTCCT
CTCTTCCTGGGGGGATATCATAG
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