mRNA_C-tenellus_contig8388.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8388.1.1
Unique NamemRNA_C-tenellus_contig8388.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8388.1.1 vs. uniprot
Match: A0A6H5KTE1_9PHAE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTE1_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.060e-46
Identity = 87/140 (62.14%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   28 RFLTLGLVASMASSLAVTQSPRLLILGGTGFIGSTIAKMAVKSGFQVTSLSRRGAPSPDTDPESYPANGVEWLQGDATDPAVVSDVIKNGP--YVGVVHAVGMLFAGKLNRFASGSGSIPNPGCDYDQITRQTAFAAATA 441
            + LTL +  ++    A+  +P++L+LGGTGFIGST++++AV SG +VTSLSRRG PSPD+DP      GV +L+GDATDPAVV  VI +G   Y GVVHAVGMLFAG LNRFASGSGS+P+PG  YD+ITRQTAFAA  A
Sbjct:    2 QLLTLLIALAVVGDTAMALAPKILVLGGTGFIGSTVSRIAVDSGCEVTSLSRRGTPSPDSDP----LPGVNFLKGDATDPAVVRQVINDGKCDYDGVVHAVGMLFAGSLNRFASGSGSVPDPGTTYDKITRQTAFAATAA 137          
BLAST of mRNA_C-tenellus_contig8388.1.1 vs. uniprot
Match: A0A835YPV7_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 8.140e-32
Identity = 69/128 (53.91%), Postives = 88/128 (68.75%), Query Frame = 1
Query:   58 MASSLAVTQSPRLLILGGTGFIGSTIAKMAVKSGFQVTSLSRRGAPSPDTDPESYPANGVEWLQGDATDPAVVSDVIKNGPYVGVVHAVGMLFAGKLNRFASGSGSIPNPGCDYDQITRQTAFAAATA 441
            MA+S ++  + RLL+LGGTGF+G TIA+ AV  G+ VTSLSRRG    D D      + + WL+GDA+D   V+ V++ G +  VVHA+GML    LNRFASGSGS+P  G  YDQ+TRQT FAAA A
Sbjct:   26 MATSSSLAAN-RLLVLGGTGFVGGTIAQEAVNRGYSVTSLSRRGRLD-DAD------DRITWLEGDASDAGTVARVVQEGEFDAVVHAIGMLLDNSLNRFASGSGSVPGEGATYDQVTRQTVFAAADA 145          
BLAST of mRNA_C-tenellus_contig8388.1.1 vs. uniprot
Match: L1I751_GUITC (Epimerase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I751_GUITC)

HSP 1 Score: 120 bits (300), Expect = 1.300e-30
Identity = 61/125 (48.80%), Postives = 90/125 (72.00%), Query Frame = 1
Query:   52 ASMASSLAVTQSPRLLILGGTGFIGSTIAKMAVKSGFQVTSLSRRGAPSPDTDPESYPANGVEWLQGDATDPAVVSDVIKNGPYVGVVHAVGMLFAGKLNRFASGSGSIPNPGCDYDQITRQTAF 426
            AS ASS +  +  ++L+LGGTGF+GS +A++A++ G++V +LSRRG P+  +   S  A+ + W +GDAT  A +  V++ G +  VVHA+GMLF  +LN++ASGSGS+P  G  YD+ITRQTAF
Sbjct:    5 ASQASSSSAKKG-KILVLGGTGFVGSNVAQLAIERGYEVVALSRRGEPTGAS--RSGAASKIAWRKGDATKKADIEKVMEEGGFTAVVHAIGMLFETELNKYASGSGSVPRAGSTYDEITRQTAF 126          
BLAST of mRNA_C-tenellus_contig8388.1.1 vs. uniprot
Match: C1N367_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N367_MICPC)

HSP 1 Score: 117 bits (293), Expect = 5.200e-29
Identity = 61/118 (51.69%), Postives = 80/118 (67.80%), Query Frame = 1
Query:   91 RLLILGGTGFIGSTIAKMAVKSGFQVTSLSRRGAPSPDT-DPESYPANGVEWLQGDATDPAVVSDVIKNGPYVGVVHAVGMLFAGKLNRFASGSGSIPNPGCDYDQITRQTAFAAATA 441
            +LL+LGGTGF+G  + + A++ G+ V S+SRRGAPS     P S     V+W  GD T P+ V DV+  G +VG VHAVGML A  LN +ASGSGS+P+ G  YD +TR++AF AA A
Sbjct:   60 KLLVLGGTGFVGGNVIERALEGGYSVVSISRRGAPSASARGPTSSLDGRVDWRVGDVTLPSTVRDVLAEGGFVGCVHAVGMLLASDLNAYASGSGSVPSAGSTYDDVTRKSAFHAADA 177          
BLAST of mRNA_C-tenellus_contig8388.1.1 vs. uniprot
Match: A0A7S0QX38_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QX38_9CHLO)

HSP 1 Score: 116 bits (291), Expect = 1.080e-28
Identity = 58/121 (47.93%), Postives = 82/121 (67.77%), Query Frame = 1
Query:   82 QSPRLLILGGTGFIGSTIAKMAVKSGFQVTSLSRRGAPSPDTDPESYPANGVEWLQGDAT-DPAVVSDVIKNGPYVGVVHAVGMLFAGKLNRFASGSGSIPNPGCDYDQITRQTAFAAATA 441
             S ++L+LGGTG++GS + ++A+  G+ V S+SRRG         S    GV+W +GD   DPA+V+ ++  G + GV+HA+GML     N+FASGSGS+P PG  YDQ+TRQTA AAA+A
Sbjct:   86 SSKKILVLGGTGYVGSEVCRIALSRGYSVVSVSRRGLVE-----GSDQLKGVDWRKGDVVADPAIVAHILSEGGFDGVMHAIGMLLESDANKFASGSGSVPTPGSTYDQVTRQTALAAASA 201          
BLAST of mRNA_C-tenellus_contig8388.1.1 vs. uniprot
Match: C1E365_MICCC (Epimerase domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E365_MICCC)

HSP 1 Score: 114 bits (284), Expect = 8.020e-28
Identity = 61/120 (50.83%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   91 RLLILGGTGFIGSTIAKMAVKSGFQVTSLSRRGAPSPDTDPESYPA---NGVEWLQGDATDPAVVSDVIKNGPYVGVVHAVGMLFAGKLNRFASGSGSIPNPGCDYDQITRQTAFAAATA 441
            +LL+LGGTGFIGS I + A+ SG+ V S+SRRG   P  DP  YP    N V+W +GD   P  ++ V+  G +V  +HAVGML A  +N  ASGSGS P+PG  YD +TR TA  AA A
Sbjct:   51 KLLVLGGTGFIGSKICERALSSGYDVVSISRRG--DPPGDPHRYPDGVWNRVDWRKGDCVQPDTIATVLGEGGFVACIHAVGMLLASDINALASGSGSKPSPGATYDDVTRVTALNAADA 168          
BLAST of mRNA_C-tenellus_contig8388.1.1 vs. uniprot
Match: A0A7S0S8B4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S8B4_9CHLO)

HSP 1 Score: 110 bits (275), Expect = 1.920e-27
Identity = 61/121 (50.41%), Postives = 76/121 (62.81%), Query Frame = 1
Query:   82 QSPRLLILGGTGFIGSTIAKMAVKSGFQVTSLSRRGAPSPDTDPESYPANGVEWLQGDA-TDPAVVSDVIKNGPYVGVVHAVGMLFAGKLNRFASGSGSIPNPGCDYDQITRQTAFAAATA 441
            +  +LL+LGGTGF+GS I   A+++GF+V S+SRRG P PD   +    + VEW  GD    P  V D +  G YVG +HAVGML    LN  ASGSGS+PN G  YD +TR TA  AA A
Sbjct:   68 EKGKLLVLGGTGFVGSNICVRAIEAGFRVVSVSRRGLP-PDGIEQGSLLSKVEWRAGDLLAAPGTVRDTLAEGGYVGCIHAVGMLLTSDLNALASGSGSMPNAGATYDDVTRVTASTAADA 187          
BLAST of mRNA_C-tenellus_contig8388.1.1 vs. uniprot
Match: A0A7S3QJZ9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJZ9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.730e-23
Identity = 52/122 (42.62%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   91 RLLILGGTGFIGSTIAKMAVKSGFQVTSLSRRGAPSPDTDPESYPANGVEWLQGDATDPAVVSDVIKNGPYVGVVHAVGMLFAG-----KLNRFASGSGSIPNPGCDYDQITRQTAFAAATA 441
            ++L+LGG+GF+G TIA+ A   G+ VTSLSRRG   P+ DP+ +  + +++  GDA +  V+ +++  G Y  + H +G+L  G       NRF SGSGS+P     YD+ITR TAF A  A
Sbjct:   58 KILVLGGSGFLGGTIAQRAALEGYSVTSLSRRG--KPEKDPKDFTNDKIDYRIGDARESLVIENILDEGDYTAIFHCIGILLDGDSGLRSFNRFVSGSGSVPEENATYDEITRLTAFNAIAA 177          
BLAST of mRNA_C-tenellus_contig8388.1.1 vs. uniprot
Match: B7FWD7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWD7_PHATC)

HSP 1 Score: 99.4 bits (246), Expect = 3.610e-22
Identity = 57/131 (43.51%), Postives = 75/131 (57.25%), Query Frame = 1
Query:   91 RLLILGGTGFIGSTIAKMAVKSGFQVTSLSRRGAP----SPDTDPESYPANG----------VEWLQGDATDPAVVSDVIKNGPYVGVVHAVGMLF-----AGKLNRFASGSGSIPNPGCDYDQITRQTAF 426
            +LL+LGGTGF+G T+ K A+  G+ VTSLSRRG P    S  T   S  A+           +++ QGDA     +  ++  G YVGV+H +G+LF      G  NRF SGSGS+P+    YD ITR TAF
Sbjct:   56 KLLVLGGTGFLGQTVCKRAIVEGYDVTSLSRRGLPPVTASDKTVSSSSSASSSIMNMASSIKIDYRQGDARQKEAIEAILNEGGYVGVIHTIGLLFDETSGMGSYNRFVSGSGSLPDADSTYDTITRLTAF 186          
BLAST of mRNA_C-tenellus_contig8388.1.1 vs. uniprot
Match: A0A7R9ZJZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZJZ2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.900e-22
Identity = 51/126 (40.48%), Postives = 76/126 (60.32%), Query Frame = 1
Query:   58 MASSLAVTQSPRLLILGGTGFIGSTIAKMAVKSGFQVTSLSRRGAPSPDTDPESYPANGVEWLQGDATDPAVVSDVIKNGPYVGVVHAVGMLF-----AGKLNRFASGSGSIPNPGCDYDQITRQT 420
            M+SS   T+  ++L+LGGTGF+G T+ + A   G+ VTSLSRRG P    D +S  ++  ++  GDA     + +++  G YV V+H +G+LF      G  NRF SGSGS+P+    Y+ IT+ T
Sbjct:   56 MSSSSGNTKKGKVLVLGGTGFVGQTVCRRASLEGYSVTSLSRRGLPPSAADSKSSSSSNTDYRIGDARKVEPIRNILNEGGYVAVIHCIGLLFDDASGLGTYNRFVSGSGSVPDTNSTYETITQLT 181          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8388.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTE1_9PHAE1.060e-4662.14NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A835YPV7_9STRA8.140e-3253.91NAD(P)-bd_dom domain-containing protein n=1 Tax=Tr... [more]
L1I751_GUITC1.300e-3048.80Epimerase domain-containing protein n=1 Tax=Guilla... [more]
C1N367_MICPC5.200e-2951.69Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S0QX38_9CHLO1.080e-2847.93Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
C1E365_MICCC8.020e-2850.83Epimerase domain-containing protein n=1 Tax=Microm... [more]
A0A7S0S8B4_9CHLO1.920e-2750.41Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S3QJZ9_9STRA2.730e-2342.62Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B7FWD7_PHATC3.610e-2243.51Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7R9ZJZ2_9STRA4.900e-2240.48Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8388contigC-tenellus_contig8388:222..1633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LJU3
PFAMsEpimerase,NAD_binding_10
Model size441
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016491,GO:0016651,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901004,GO:1901006,GO:1901576,GO:1901661,GO:1901663
Exons2
Evalue2.45e-49
EggNOG OGsCOG0702@1|root,KOG4288@2759|Eukaryota
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-23_000150.1
Descriptionubiquinone-6 biosynthetic process
Cds size441
COG categoryGM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790102.2373886-CDS-C-tenellus_contig8388:221..3671680790102.2373886-CDS-C-tenellus_contig8388:221..367Choristocarpus tenellus KU2346CDSC-tenellus_contig8388 222..367 -
1680790102.2516925-CDS-C-tenellus_contig8388:1338..16331680790102.2516925-CDS-C-tenellus_contig8388:1338..1633Choristocarpus tenellus KU2346CDSC-tenellus_contig8388 1339..1633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8388.1.1prot_C-tenellus_contig8388.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8388 222..1633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8388.1.1

>prot_C-tenellus_contig8388.1.1 ID=prot_C-tenellus_contig8388.1.1|Name=mRNA_C-tenellus_contig8388.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=147bp
MEGKRKAATRFLTLGLVASMASSLAVTQSPRLLILGGTGFIGSTIAKMAV
KSGFQVTSLSRRGAPSPDTDPESYPANGVEWLQGDATDPAVVSDVIKNGP
YVGVVHAVGMLFAGKLNRFASGSGSIPNPGCDYDQITRQTAFAAATA
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mRNA from alignment at C-tenellus_contig8388:222..1633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8388.1.1 ID=mRNA_C-tenellus_contig8388.1.1|Name=mRNA_C-tenellus_contig8388.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1412bp|location=Sequence derived from alignment at C-tenellus_contig8388:222..1633- (Choristocarpus tenellus KU2346)
ATGGAAGGGAAGCGGAAGGCAGCGACGAGGTTTTTGACTCTGGGATTGGT TGCTTCGATGGCTTCAAGTTTGGCCGTGACGCAGAGCCCTCGGCTCTTGA TACTTGGTGGGACGGGCTTCATTGGAAGCACCATTGCGAAGATGGCTGTG AAGAGTGGATTCCAGGTGACCTCTCTCAGCAGGAGAGGAGCACCTTCACC TGATACTGACCCAGAAAGCTACCCAGCTAATGGTGTAGAATGGTTGCAAG GAGATGCCACAGATCCTGCTGTGGTCAGTGATGTAATCAAGAATGGTGAG TGCATGAAAGATTGTAGGTGCAAAGCAGCGATGAACAACCATTCGTTGAT TACGAACATCCCTATGCCCCCCGTACCTTAACACCGTTTCTCTTATTCTG ATTGCTGGCCATGTATAGACCCCTGAACCGACACCTGCACTCCCTCACAT CTGAAGTGCCCTAGCACGCAATTACTGCAGGGCAACGTGCCAAATAGAAC AGCGTCTTCGCGTTCCAGTCACCATTGCCAATGCTTCTGTTTTACGTTAT GGCTCGGTGCATCAAATCGAGCAGGTATCGAATTTACATCTATCAAGACA CATCCCAAGTCGCTCTTCGAATGAATCCAGAATATCTTCATCTAAAAGTA GGGGTACTACTGGAGTAGTGAAGACTAATGAACAAGGCTGAGTCCACAGA TGAAAGTGAGAACGGCAGAGTTCATCCCGAAACTAAACCCTCGCCCCCGC CAACACCACTCATGTGGGGTACATAATCTCCACACTAAAACTAATCAAAA GTTCCGTCTTCCCTTCGAGATTGAACTACTCGCTTTAGGTTCCCCGTACT TAAGTGGTGTCCAATATGTCTCTATGGGGAAGGTAGTACCTGGGTCGATG ATAGTTGCTCCCCTCACAAGCAATGCATGGAAGTCGTACTCACTGTCAAG TTCAAGTCCCATTCAAGTATCTCACTCTTCTTGTCCTGTCTTGGGTACAA ATCTCTTGACCTCTACTCAATCCTCCAACAACAAATTTGAGAGCAACACA ACCACCCACCCCCACCAAAAAGTATTAAGCGCTCTCTCCCACGTCCTGTC CGCCATCAAATATAAACTCTTACATTGAGACACCGCAATAGTAACTCCCT AATTGAGCCAAGGGATTCATCTCACTACAAATATTTACACACACATTCAC AAAAACTCCAGAGTATATACATGAATGCTTCTACTCAGTTGTACCTGGTA CTTACTTGCCTGCCAGGTCCATATGTAGGTGTCGTTCATGCAGTGGGAAT GCTGTTTGCAGGGAAATTGAACCGATTTGCGAGCGGATCCGGGTCCATCC CCAATCCTGGCTGTGACTACGACCAGATCACTCGGCAGACTGCTTTTGCT GCAGCCACTGCT
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Coding sequence (CDS) from alignment at C-tenellus_contig8388:222..1633-

>mRNA_C-tenellus_contig8388.1.1 ID=mRNA_C-tenellus_contig8388.1.1|Name=mRNA_C-tenellus_contig8388.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=441bp|location=Sequence derived from alignment at C-tenellus_contig8388:222..1633- (Choristocarpus tenellus KU2346)
ATGGAAGGGAAGCGGAAGGCAGCGACGAGGTTTTTGACTCTGGGATTGGT
TGCTTCGATGGCTTCAAGTTTGGCCGTGACGCAGAGCCCTCGGCTCTTGA
TACTTGGTGGGACGGGCTTCATTGGAAGCACCATTGCGAAGATGGCTGTG
AAGAGTGGATTCCAGGTGACCTCTCTCAGCAGGAGAGGAGCACCTTCACC
TGATACTGACCCAGAAAGCTACCCAGCTAATGGTGTAGAATGGTTGCAAG
GAGATGCCACAGATCCTGCTGTGGTCAGTGATGTAATCAAGAATGGTCCA
TATGTAGGTGTCGTTCATGCAGTGGGAATGCTGTTTGCAGGGAAATTGAA
CCGATTTGCGAGCGGATCCGGGTCCATCCCCAATCCTGGCTGTGACTACG
ACCAGATCACTCGGCAGACTGCTTTTGCTGCAGCCACTGCT
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