mRNA_C-tenellus_contig8346.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8346.1.1
Unique NamemRNA_C-tenellus_contig8346.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8346.1.1 vs. uniprot
Match: D8LS68_ECTSI (Importin N-terminal domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS68_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.910e-28
Identity = 55/77 (71.43%), Postives = 72/77 (93.51%), Query Frame = 3 
Query:  228 MDASAAKLLDFSQPLDVSLLDKVITTAYDASNPKRNDANMLLVQMKESPDMWTRSDAILEQSQSQHTRFFGLQVVFG 458
            M+A+AAKL+DFSQP+DV+LLD+V+TTA+DAS+P+RNDAN+LL++MKESPDMW ++  ILEQSQSQHTRF GLQ++ G
Sbjct:    1 MEAAAAKLMDFSQPMDVALLDQVVTTAFDASHPQRNDANILLMRMKESPDMWQQAGTILEQSQSQHTRFIGLQILDG 77
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BLAST of mRNA_C-tenellus_contig8346.1.1 vs. uniprot
Match: A0A835YZ33_9STRA (Exportin1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ33_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.940e-15
Identity = 41/75 (54.67%), Postives = 58/75 (77.33%), Query Frame = 3 
Query:  228 MDASAAKLLDFSQPLDVSLLDKVITTAYDASNPKRNDANMLLVQMKESPDMWTRSDAILEQSQSQHTRFFGLQVV 452
            M+A+AAKL+D SQP D++LLD+V+T  YD  NP++  AN LL+Q+K+  +MWTRS  ILE + S  T+FFGLQ++
Sbjct:    1 MEAAAAKLMDMSQPFDLALLDQVVTATYDPHNPQQQQANRLLMQLKDHKEMWTRSKDILEGTASPQTKFFGLQIL 75
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BLAST of mRNA_C-tenellus_contig8346.1.1 vs. uniprot
Match: A0A7S2SV89_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV89_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.950e-14
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 3 
Query:  225 SMDASAAKLLDFSQPLDVSLLDKVITTAYDASNPKRNDANMLLVQMKESPDMWTRSDAILEQSQSQHTRFFGLQVV 452
            S++ + A LLDFSQP DV+L +KV+  AY A+NP +  A+ LLV+++E PDMWTR+DAILEQ  S   RFFG  V+
Sbjct:    3 SIEEARALLLDFSQPFDVALFEKVVEAAYQAANPDQPPASRLLVELQEHPDMWTRADAILEQCSSPSARFFGALVL 78
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BLAST of mRNA_C-tenellus_contig8346.1.1 vs. uniprot
Match: UPI0009E25EFE (exportin-1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E25EFE)

HSP 1 Score: 77.4 bits (189), Expect = 1.940e-13
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 3 
Query:  240 AAKLLDFSQPLDVSLLDKVITTAYDASNPKRNDANMLLVQMKESPDMWTRSDAILEQSQSQHTRFFGLQVV 452
            A +LLDFSQ LD++LLD V++  Y A  P++  A+ +L Q+K+ PD WTR D ILE S +Q T++F LQ++
Sbjct:   11 ATQLLDFSQKLDITLLDSVVSCFYMAQGPQQRMADQILTQLKQHPDAWTRVDTILEYSNNQQTKYFALQIL 81
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BLAST of mRNA_C-tenellus_contig8346.1.1 vs. uniprot
Match: UPI0010A04211 (exportin-1 n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI0010A04211)

HSP 1 Score: 74.3 bits (181), Expect = 1.450e-12
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 3 
Query:  231 DASAAKLLDFSQPLDVSLLDKVITTAYDASNPKRNDANMLLVQMKESPDMWTRSDAILEQSQSQHTRFFGLQVV 452
            D +A +LLDFSQ LD++LLD V+   Y    P++  A  +L  +KE PD WTR D ILE SQ+ +T+++ LQ++
Sbjct:   10 DHAARQLLDFSQKLDINLLDSVVNCLYHGEGPQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYALQIL 83
[Close]
BLAST of mRNA_C-tenellus_contig8346.1.1 vs. uniprot
Match: A0A7M3QXJ7_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QXJ7_SPIER)

HSP 1 Score: 81.3 bits (199), Expect = 1.580e-12
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 3 
Query:  201 PAPLYPLVSMDASAAKLLDFSQPLDVSLLDKVITTAYDASNPKRNDANMLLVQMKESPDMWTRSDAILEQSQSQHTRFFGLQVV 452
            P P  P +  +A+AA+LLDFSQ LD+ LLD+V+ + Y +S  ++  A  +L  +KE P+ WTR D+ILE S SQ T++F LQ++
Sbjct: 1058 PMPSVPTMLTEATAAQLLDFSQRLDIQLLDQVVNSMYTSSGEEQKLAQKILNTLKEHPEAWTRVDSILEFSSSQQTKYFALQIL 1141
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BLAST of mRNA_C-tenellus_contig8346.1.1 vs. uniprot
Match: A0A074ZBW6_9TREM (Importin N-terminal domain-containing protein n=5 Tax=Opisthorchiidae TaxID=6196 RepID=A0A074ZBW6_9TREM)

HSP 1 Score: 80.9 bits (198), Expect = 1.820e-12
Identity = 38/84 (45.24%), Postives = 61/84 (72.62%), Query Frame = 3 
Query:  201 PAPLYPLVSMDASAAKLLDFSQPLDVSLLDKVITTAYDASNPKRNDANMLLVQMKESPDMWTRSDAILEQSQSQHTRFFGLQVV 452
            P+P   ++S + +A++LLDFSQPLD++LLD+V+   Y+ S P++  A  +L  +KE PD W R D+ILE S ++ T++FGLQ++
Sbjct:    3 PSPTMGVIS-EVAASQLLDFSQPLDIALLDRVVDCMYNESGPQQKLAEKILNTLKEHPDAWMRVDSILEFSSNRQTKYFGLQIL 85
[Close]
BLAST of mRNA_C-tenellus_contig8346.1.1 vs. uniprot
Match: A0A3M7KTF0_AUXPR (Importin N-terminal domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KTF0_AUXPR)

HSP 1 Score: 80.9 bits (198), Expect = 1.830e-12
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 3 
Query:  228 MDASAAKLLDFSQPLDVSLLDKVITTAYDAS-NPKRNDANMLLVQMKESPDMWTRSDAILEQSQSQHTRFFGLQVV 452
            ++A+AAKLL+F++PLDV+LLD  +   Y AS N +R  A  +L + +E PD WTR DAILE S++Q ++FFGLQV+
Sbjct:    5 LEAAAAKLLNFAEPLDVALLDATVAAFYGASTNDERGSAEAILRKFQEQPDAWTRVDAILETSKNQQSKFFGLQVL 80
[Close]
BLAST of mRNA_C-tenellus_contig8346.1.1 vs. uniprot
Match: A0A024GRP6_9STRA (Importin N-terminal domain-containing protein n=14 Tax=Albugo TaxID=65356 RepID=A0A024GRP6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.460e-12
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 3 
Query:  228 MDASAAKLLDFSQPLDVSLLDKVITTAYDASNPKRNDANMLLVQMKESPDMWTRSDAILEQSQSQHTRFFGLQVV 452
            M+A   KLLDFS P DVSLLD+V+T   D  +P +  AN ++V ++E  D WTR+  ILEQS+S  T++FGLQ++
Sbjct:    1 MEAIGQKLLDFSHPFDVSLLDQVVTCMNDPKSPHQRIANQIMVALQEHQDSWTRASDILEQSKSPQTKYFGLQIL 75
[Close]
BLAST of mRNA_C-tenellus_contig8346.1.1 vs. uniprot
Match: A0A7I2V3J1_HUMAN (Exportin-1 n=2 Tax=Amniota TaxID=32524 RepID=A0A7I2V3J1_HUMAN)

HSP 1 Score: 73.6 bits (179), Expect = 2.570e-12
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 3 
Query:  231 DASAAKLLDFSQPLDVSLLDKVITTAYDASNPKRNDANMLLVQMKESPDMWTRSDAILEQSQSQHTRFFGLQVV 452
            D +A +LLDFSQ LD++LLD V+   Y     ++  A  +L  +KE PD WTR D ILE SQ+ +T+++GLQ++
Sbjct:   10 DHAARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQIL 83
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8346.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS68_ECTSI2.910e-2871.43Importin N-terminal domain-containing protein (Fra... [more]
A0A835YZ33_9STRA1.940e-1554.67Exportin1 n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A7S2SV89_9STRA1.950e-1455.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI0009E25EFE1.940e-1349.30exportin-1-like n=1 Tax=Orbicella faveolata TaxID=... [more]
UPI0010A042111.450e-1245.95exportin-1 n=1 Tax=Erpetoichthys calabaricus TaxID... [more]
A0A7M3QXJ7_SPIER1.580e-1246.43Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A074ZBW6_9TREM1.820e-1245.24Importin N-terminal domain-containing protein n=5 ... [more]
A0A3M7KTF0_AUXPR1.830e-1252.63Importin N-terminal domain-containing protein n=2 ... [more]
A0A024GRP6_9STRA2.460e-1250.67Importin N-terminal domain-containing protein n=14... [more]
A0A7I2V3J1_HUMAN2.570e-1245.95Exportin-1 n=2 Tax=Amniota TaxID=32524 RepID=A0A7I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8346contigC-tenellus_contig8346:299..2295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LS68
Preferred nameXPO1
PFAMsCRM1_C,IBN_N,Xpo1
Model size1360
Max annot lvl2759|Eukaryota
KEGG koko:K03939,ko:K14290
KEGG TC1.I.1,3.D.1.6
KEGG Pathwayko00190,ko01100,ko03008,ko03013,ko04013,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05164,ko05166,ko05169,map00190,map01100,map03008,map03013,map04013,map04714,map04723,map04932,map05010,map05012,map05016,map05164,map05166,map05169
KEGG ModuleM00143
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000054,GO:0000055,GO:0000056,GO:0000122,GO:0000775,GO:0000776,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0005049,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005911,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009266,GO:0009408,GO:0009506,GO:0009553,GO:0009555,GO:0009628,GO:0009653,GO:0009826,GO:0009846,GO:0009856,GO:0009860,GO:0009889,GO:0009890,GO:0009892,GO:0009932,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016049,GO:0019219,GO:0019222,GO:0019904,GO:0022414,GO:0022613,GO:0030054,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033157,GO:0033750,GO:0034613,GO:0040007,GO:0042221,GO:0042254,GO:0042493,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045184,GO:0045892,GO:0045934,GO:0046822,GO:0046825,GO:0046907,GO:0048229,GO:0048468,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0055044,GO:0060255,GO:0060341,GO:0060560,GO:0065007,GO:0070201,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0098687,GO:0140104,GO:0140142,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:2000112,GO:2000113,GO:2001141
Exons3
Evalue2.83e-33
EggNOG OGsCOG5101@1|root,KOG2020@2759|Eukaryota
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-12_004630.2
Descriptionnuclear export signal receptor activity
Cds size279
COG categoryUY
BRITEko00000,ko00001,ko00002,ko03009,ko03016,ko03019,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790099.9829102-UTR-C-tenellus_contig8346:298..11521680790099.9829102-UTR-C-tenellus_contig8346:298..1152Choristocarpus tenellus KU2346UTRC-tenellus_contig8346 299..1152 -
1680790100.0413222-UTR-C-tenellus_contig8346:1699..18511680790100.0413222-UTR-C-tenellus_contig8346:1699..1851Choristocarpus tenellus KU2346UTRC-tenellus_contig8346 1700..1851 -
1680790100.0532286-UTR-C-tenellus_contig8346:2220..22951680790100.0532286-UTR-C-tenellus_contig8346:2220..2295Choristocarpus tenellus KU2346UTRC-tenellus_contig8346 2221..2295 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790100.0228498-CDS-C-tenellus_contig8346:1152..13291680790100.0228498-CDS-C-tenellus_contig8346:1152..1329Choristocarpus tenellus KU2346CDSC-tenellus_contig8346 1153..1329 -
1680790100.032469-CDS-C-tenellus_contig8346:1597..16991680790100.032469-CDS-C-tenellus_contig8346:1597..1699Choristocarpus tenellus KU2346CDSC-tenellus_contig8346 1598..1699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8346.1.1prot_C-tenellus_contig8346.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8346 1153..1699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8346.1.1

>prot_C-tenellus_contig8346.1.1 ID=prot_C-tenellus_contig8346.1.1|Name=mRNA_C-tenellus_contig8346.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=93bp
MDASAAKLLDFSQPLDVSLLDKVITTAYDASNPKRNDANMLLVQMKESPD
MWTRSDAILEQSQSQHTRFFGLQVVFGYRGGVKVGVFPVAQI*
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mRNA from alignment at C-tenellus_contig8346:299..2295-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8346.1.1 ID=mRNA_C-tenellus_contig8346.1.1|Name=mRNA_C-tenellus_contig8346.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1997bp|location=Sequence derived from alignment at C-tenellus_contig8346:299..2295- (Choristocarpus tenellus KU2346)
GAGCAGTGAGTGTTCAGAGGTCGTTGACATCGAGAGATTGGTCCAAAGGA
CAAGGTGGAAAACACTCACTTTCAGGTGACAAGGCACCGAGGAATATTGA
TGTTTACGAGCCAATGATGCATCTGGTTGTAATCCTCTGGGGATGGGTAG
ACTTGATTCGATTAGTCAACGAACTCAATGCAAGGCTGCGAATTACAGGG
CACCTCGCACTATCCCGTTGGCGAATTCGAACTCTGAACCAAGACATCGG
GTATTCTTCCCACTCATATACACTGTGCTGAGTAATTGCGACTTACCATC
AACTGTTCAGTTTGTAAATGAGACCGTATCCTTGTTCCACGGGTTCCACG
GGTACCACTGGTCTAGCCATCCTTGTTACTTACAATTCGAGCCCCATTTC
CCTCTCCATTGGACATTTCGATTGTCCACCACACGGCAACTTAGGCGTCT
GTTAAGTAAGTGGTAGTGTATTGGGTTCGGTTGGCTTTGCCTCCGCCGAC
CGCTATCATTACAGCTGGGTAATCAAGAGGCGTGCCGGGCCGGGCCGGCG
CCGAGGTCGTGGTGCCAACCCGGCCCCACTGTATCCTTTGGTGAGCATGG
ACGCATCTGCGGCAAAGCTGCTGGACTTCTCGCAGCCCCTAGATGTTTCC
CTCCTGGACAAGGTTATCACCACAGCGTACGATGCCAGCAATCCCAAGGT
AAGACATCAGCAGCAAGCATAGGATGTAGGTGTATTTGTCCTTTCCACGA
AGGGTTGAACCAACACTCCTCTTAAGAGAGATGCGTAGAGTAAGATGCAT
CTCATGAGCAACTACTGAATTATTTGAAATATACCGCGCTTCTCCTCCTG
CATGGATCCCATCCCCAACGTGCTGGACTGTTCGGATTGAATTGATCTAG
AACCTCCCTACCCTCCCTCACTCGTGGCAATATATTCGTGTTTGTGCTTG
TCTCCTGTCTCAATAGCGTAATGATGCAAACATGTTGCTGGTTCAAATGA
AGGAGAGCCCGGACATGTGGACTCGATCGGACGCCATCCTTGAGCAGTCA
CAGAGTCAGCACACTCGCTTCTTTGGTCTTCAGGTAGTTTTTGGATATAG
GGGGGGCGTCAAGGTCGGCGTGTTTCCTGTTGCTCAGATTTGACGGAAAT
TCAGACTGTGGTAGTGAATGACACATACAAGTGGCGAACTTTGGGTTAGG
GTTAGGGTTAGGGTTAGGGTTAGTCAAGGGGTGGTACAAAGAAGTGATCA
TTTGATGTGAAGTTGTGCATCTTGAGCAGTAGTTGAGGTGAGTGAGTGGA
ACTCTGTGGGTAAATATGTTTCGTCGGGTTTTTACCTTTGGTACTGAACA
CGTCCTGAACCAGAAAGAGCATAATTTATTTCCCATGCATACGACCAATG
GAAGTCTGTATTGAACAGGCAACAACACTGCCACTCCTCATCTCTTTCTT
TTGCCTTGTTACCTTGTAGCCTTGCTTGCCCTGGCCCTACTCCTTTCTTT
TGCCCTGTACCTAAATGCAGGGGAGGGGAGGGGAGGGAAGGCAGGGGGTA
GAGGAATATTACCTTGCATATTTTAATGGGTCCAACAGGGGAGGTGTGGG
AGTGCAATTGATTGAGCTTGAACAAACCATAAACTTTTTCATATTTTGAG
CTATGATTTTTTGTGGGTTGGGGTACTTTTCTGTCGTTTTGGGGCAATGT
GAGTGGATGCATGTTTGTGGAGGGTCGTCAGGAGGGTAGCTGGCGGCTTG
ATAACAAAAGTTACACCTCTTGAAACCGGTCTACCCTTTGAAAGACAGGA
GCAGTTTTTATTGGTACTGAAGTGTTGCCTCAACAGGAGCAGTTTTGCCA
AGGCTTGTGGAACACAAGCAATGGCTCTTGTGTGGTAGGCGATGTAAGCT
TATCGCAAGCTTATTTGCGTTTGTGTGATGTGTACTGTGGTTGATAGGGC
ATTGGGAAGATTAACGTGTCCATGGCACAACTTGATGGTCAGAGAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig8346:299..2295-

>mRNA_C-tenellus_contig8346.1.1 ID=mRNA_C-tenellus_contig8346.1.1|Name=mRNA_C-tenellus_contig8346.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=279bp|location=Sequence derived from alignment at C-tenellus_contig8346:299..2295- (Choristocarpus tenellus KU2346)
ATGGACGCATCTGCGGCAAAGCTGCTGGACTTCTCGCAGCCCCTAGATGT
TTCCCTCCTGGACAAGGTTATCACCACAGCGTACGATGCCAGCAATCCCA
AGCGTAATGATGCAAACATGTTGCTGGTTCAAATGAAGGAGAGCCCGGAC
ATGTGGACTCGATCGGACGCCATCCTTGAGCAGTCACAGAGTCAGCACAC
TCGCTTCTTTGGTCTTCAGGTAGTTTTTGGATATAGGGGGGGCGTCAAGG
TCGGCGTGTTTCCTGTTGCTCAGATTTGA
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