mRNA_C-tenellus_contig8343.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8343.2.1
Unique NamemRNA_C-tenellus_contig8343.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8343.2.1 vs. uniprot
Match: D7FQ43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ43_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.050e-17
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 3 
Query:  291 ALNANGRMKKVFVTDDKFIDVIDALQRRGWVRSSHANSPNFGLKWRNLSNINFRLVRSDQ 470
            A   + R + +FVTDDKF DVI ALQRRGW RS +ANSPNF LKWRNLSNINFRL+R  Q
Sbjct:   22 ATRTDSRQRGIFVTDDKFSDVIRALQRRGWTRSGNANSPNFDLKWRNLSNINFRLLRKHQ 81
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BLAST of mRNA_C-tenellus_contig8343.2.1 vs. uniprot
Match: A0A8K1CQH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQH6_PYTOL)

HSP 1 Score: 71.6 bits (174), Expect = 1.330e-9
Identity = 38/72 (52.78%), Postives = 44/72 (61.11%), Query Frame = 3 
Query:  318 KVFVTDDKFIDVIDALQRRGWVRSSHANSPNFGLKWRNLSNINFRLVRSDQYINHLKNSQQLSNKALLASHL 533
            KVFVTDDKF DVI AL  RGW R  H + P F LKW N S I ++ V S Q +NH +N    S K  LA+ L
Sbjct:    6 KVFVTDDKFPDVIAALAARGWRRYPHLSFPKFDLKWSNYSKIAWKRVASHQIVNHFQNVTLFSQKDELAARL 77
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BLAST of mRNA_C-tenellus_contig8343.2.1 vs. uniprot
Match: A0A3R7K2Z0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K2Z0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.620e-7
Identity = 47/142 (33.10%), Postives = 67/142 (47.18%), Query Frame = 3 
Query:  312 MKKVFVTDDKFIDVIDALQRRGWVRSSHANSPNFGLKWRNLSNINFRLVRSDQYINHLKNSQQLSNKALLASHLGFRQRIHVEDHVDGVDGKGSHPPAIVRVGNGGPCDPDNFFPRCWDLKTAGATSLLRA-FAVSASVSLL 734
            M  +F  DDKF DV++AL+ RGW R  +   P F LKW N S + +  V S Q++NH ++S   S K L    L + Q    E     +DG                C     FPR +DL  +G   LL+  F  + +V++L
Sbjct:    1 MALLFAADDKFGDVVEALEARGWRRLPYVGIPKFDLKWTNYSKVAWSRVTSKQFVNHFQHSILFSRKDLFTK-LMYAQATQDERGQTLMDG----------------C-----FPRTFDLSQSGDQRLLKQWFLYTQAVTVL 120
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8343.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQ43_ECTSI1.050e-1770.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1CQH6_PYTOL1.330e-952.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7K2Z0_9STRA1.620e-733.10Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8343contigC-tenellus_contig8343:3161..5515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65071.PYU1_T000063
PFAMsTTL
Model size1577
Max annot lvl2759|Eukaryota
KEGG koko:K16608
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.87e-08
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota,1MFBC@121069|Pythiales
DescriptionTubulin-tyrosine ligase family
Cds size1266
COG categoryO
BRITEko00000,ko01000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790099.771526-UTR-C-tenellus_contig8343:3160..34711680790099.771526-UTR-C-tenellus_contig8343:3160..3471Choristocarpus tenellus KU2346UTRC-tenellus_contig8343 3161..3471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790099.7840185-CDS-C-tenellus_contig8343:3471..34801680790099.7840185-CDS-C-tenellus_contig8343:3471..3480Choristocarpus tenellus KU2346CDSC-tenellus_contig8343 3472..3480 +
1680790099.796035-CDS-C-tenellus_contig8343:3631..37811680790099.796035-CDS-C-tenellus_contig8343:3631..3781Choristocarpus tenellus KU2346CDSC-tenellus_contig8343 3632..3781 +
1680790099.937741-CDS-C-tenellus_contig8343:4016..43701680790099.937741-CDS-C-tenellus_contig8343:4016..4370Choristocarpus tenellus KU2346CDSC-tenellus_contig8343 4017..4370 +
1680790099.95275-CDS-C-tenellus_contig8343:4762..55151680790099.95275-CDS-C-tenellus_contig8343:4762..5515Choristocarpus tenellus KU2346CDSC-tenellus_contig8343 4763..5515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8343.2.1prot_C-tenellus_contig8343.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8343 3472..5515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8343.2.1

>prot_C-tenellus_contig8343.2.1 ID=prot_C-tenellus_contig8343.2.1|Name=mRNA_C-tenellus_contig8343.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=422bp
MKKVFVTDDKFIDVIDALQRRGWVRSSHANSPNFGLKWRNLSNINFRLVR
SDQYINHLKNSQQLSNKALLASHLGFRQRIHVEDHVDGVDGKGSHPPAIV
RVGNGGPCDPDNFFPRCWDLKTAGATSLLRAFAVSASVSLLWQVAGQDFQ
PALGQRPLRSKEEEVRDRNLRPVANSSAFRLKPADYSVLMSAEAIVSRYL
SFLERGGVGHCRASNNSAGEIGVKGTKEGGEEEKAPGQGVRYKSNEVSKG
KDTRINCYPCTSFVGEGAGTKTEVGSKGTTVRSGMHCVPQDAGDEVVKVG
GKDWVSVVLEWEKMVCRRGRRFDKTVGCARTRLENSQGATASVFSDKAGA
SAGDWADRGEGEGFWEAGWGAKSRPSAGDAMFLKADTGAAVESSGSEEAG
GGVQNGRVCNDWRGVGGGLTDP
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mRNA from alignment at C-tenellus_contig8343:3161..5515+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8343.2.1 ID=mRNA_C-tenellus_contig8343.2.1|Name=mRNA_C-tenellus_contig8343.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2355bp|location=Sequence derived from alignment at C-tenellus_contig8343:3161..5515+ (Choristocarpus tenellus KU2346)
CTATTATGAAGTTCTTGAATCAGTATCCATCAACCACCTAAACACTTCAG
TTTGGGACTAGAAGAACGGTGTGAAGTTCCTCTCTTCAAATGATGGTATC
TCTCTGAATTCAGGGATGCAGTAGTCTGGGTGCTCTTGATTCTTAATTCC
CTGTCCCTCGATATCGACTTCGTGTTGCGTGATATTTGTCCTATCAACAA
AGATCGTGGGTGCTGTTTCATCAGGACTCTCATCCTCATCTACCGATAAA
GTTCTTCATTAAGGACTAGGTTCCTACGAAAACTGGTGGTGCTCTGAATG
CTAATGGAAGGATGAAGAAGGTAGAAGCTCATTATCGACCTCTTGTACCA
ACCGGTTTTGGTGTCATGTCTTCAATCAAATCGAAGTTCCTCCCCCCCTC
CCTGTAACAAACCCAAAATAGTGGAAGCTCCCCAAGATGTCTACTGAACC
CCTGCAGTGCCATTCGCACAGGTTTTTGTCACAGATGACAAGTTCATTGA
CGTGATCGATGCTCTTCAAAGGCGAGGGTGGGTGCGGTCCTCTCACGCCA
ACAGCCCCAACTTCGGACTCAAGTGGCGCAATTTAAGCAATATCAACTTT
AGGCTTGTGCGCTCAGATCAGGCAAGGAGCTCCCAAAATATCAGCCCCTC
TTTATTCGAGGGATCCCCAATAAATGTTTTGTTGGTGGGGGCGATATATT
TCAACTCTTGAACCTCGTGGTGGTGCATATTTCTGTGGACTGCCACTCTT
ATGGTGCACAAAAAAGGCGCCTGCGACAGGCTAGCTTAGCCCGCACCCGA
ACCCCTCCAAAGCCTGCCTTCCAACTATTCCGTATCATTCTCCACCCTTC
CTTCAGTATATCAACCACCTGAAGAATTCGCAGCAACTCAGTAACAAGGC
ACTTCTGGCATCTCACCTAGGCTTCCGTCAGCGCATCCATGTTGAAGACC
ACGTGGATGGAGTAGATGGGAAGGGTTCCCATCCCCCAGCCATCGTCAGG
GTTGGGAATGGTGGTCCTTGTGATCCCGACAACTTCTTTCCCCGATGCTG
GGATCTCAAAACCGCGGGAGCGACATCGCTTCTGCGAGCATTTGCCGTGT
CGGCGTCTGTGTCACTGTTGTGGCAGGTTGCAGGTCAGGATTTCCAACCA
GCGTTGGGACAGAGACCCTTGAGAAGCAAGGAGGAGGAAGTCCGTGATAG
GAATTTGAGGGTGAGACTCTTGCTCTAGCTGATCTGAAATTAGCACCACT
TATCAAGACCACAGTTTTGTTATTCTGAAGCAGGTGCAGATGCTGCCCTA
CTCGACATTCTAAGCTTTCCTTCTGACAGGGAGCTTGGACATAGGGGGGA
GGACTTAGCTACGGACTCTCGGCCTCAAAGTGTCATATGGGAAAATACGT
ATGTCCCTCGCATCCCATCCCATGGCCAGTCTTACCTGCAGTTTTGTCCA
TAAAACCACTAGTGCATTATTTCTCCAGGACCTCAACATTCTGCCTGACA
TTTTTAACCAAAGTGCTTCTTCACTACTCCCCCACCCCGAAAACATTCTT
GGGTCGCTAGTACTCATTCTCCTTCTATCCTCTCCTGTTCCCATCCCCCC
AGCCAGTGGCAAATTCCAGTGCTTTCAGGCTAAAGCCTGCTGACTACAGT
GTGCTCATGTCTGCTGAAGCAATCGTCAGTCGTTACCTCTCATTCCTGGA
GAGGGGTGGCGTGGGGCATTGCAGAGCAAGCAACAACAGCGCAGGAGAGA
TAGGGGTAAAAGGCACCAAGGAGGGGGGAGAGGAGGAGAAAGCGCCAGGG
CAGGGGGTGCGGTACAAGAGTAATGAGGTCAGCAAAGGAAAAGATACCCG
CATCAACTGTTACCCTTGCACAAGTTTTGTAGGAGAAGGGGCTGGGACGA
AGACGGAGGTAGGATCTAAAGGGACGACAGTACGGAGTGGTATGCACTGT
GTTCCTCAAGATGCGGGTGATGAGGTCGTAAAAGTTGGTGGGAAAGATTG
GGTGTCCGTGGTGTTGGAGTGGGAGAAGATGGTTTGTAGACGGGGAAGGC
GTTTTGATAAGACGGTGGGTTGCGCACGGACACGCCTGGAAAATTCGCAG
GGAGCTACTGCCAGCGTGTTCAGTGACAAGGCCGGCGCCAGTGCGGGGGA
TTGGGCGGACCGTGGGGAGGGTGAGGGGTTTTGGGAAGCTGGTTGGGGTG
CCAAGTCTCGGCCGTCAGCAGGGGATGCAATGTTTCTCAAGGCTGATACT
GGGGCAGCGGTTGAGTCCTCGGGTTCAGAGGAAGCAGGGGGAGGGGTGCA
AAATGGGCGTGTATGCAATGATTGGAGGGGGGTCGGGGGAGGGTTGACGG
ATCCG
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Coding sequence (CDS) from alignment at C-tenellus_contig8343:3161..5515+

>mRNA_C-tenellus_contig8343.2.1 ID=mRNA_C-tenellus_contig8343.2.1|Name=mRNA_C-tenellus_contig8343.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1266bp|location=Sequence derived from alignment at C-tenellus_contig8343:3161..5515+ (Choristocarpus tenellus KU2346)
ATGAAGAAGGTTTTTGTCACAGATGACAAGTTCATTGACGTGATCGATGC
TCTTCAAAGGCGAGGGTGGGTGCGGTCCTCTCACGCCAACAGCCCCAACT
TCGGACTCAAGTGGCGCAATTTAAGCAATATCAACTTTAGGCTTGTGCGC
TCAGATCAGTATATCAACCACCTGAAGAATTCGCAGCAACTCAGTAACAA
GGCACTTCTGGCATCTCACCTAGGCTTCCGTCAGCGCATCCATGTTGAAG
ACCACGTGGATGGAGTAGATGGGAAGGGTTCCCATCCCCCAGCCATCGTC
AGGGTTGGGAATGGTGGTCCTTGTGATCCCGACAACTTCTTTCCCCGATG
CTGGGATCTCAAAACCGCGGGAGCGACATCGCTTCTGCGAGCATTTGCCG
TGTCGGCGTCTGTGTCACTGTTGTGGCAGGTTGCAGGTCAGGATTTCCAA
CCAGCGTTGGGACAGAGACCCTTGAGAAGCAAGGAGGAGGAAGTCCGTGA
TAGGAATTTGAGGCCAGTGGCAAATTCCAGTGCTTTCAGGCTAAAGCCTG
CTGACTACAGTGTGCTCATGTCTGCTGAAGCAATCGTCAGTCGTTACCTC
TCATTCCTGGAGAGGGGTGGCGTGGGGCATTGCAGAGCAAGCAACAACAG
CGCAGGAGAGATAGGGGTAAAAGGCACCAAGGAGGGGGGAGAGGAGGAGA
AAGCGCCAGGGCAGGGGGTGCGGTACAAGAGTAATGAGGTCAGCAAAGGA
AAAGATACCCGCATCAACTGTTACCCTTGCACAAGTTTTGTAGGAGAAGG
GGCTGGGACGAAGACGGAGGTAGGATCTAAAGGGACGACAGTACGGAGTG
GTATGCACTGTGTTCCTCAAGATGCGGGTGATGAGGTCGTAAAAGTTGGT
GGGAAAGATTGGGTGTCCGTGGTGTTGGAGTGGGAGAAGATGGTTTGTAG
ACGGGGAAGGCGTTTTGATAAGACGGTGGGTTGCGCACGGACACGCCTGG
AAAATTCGCAGGGAGCTACTGCCAGCGTGTTCAGTGACAAGGCCGGCGCC
AGTGCGGGGGATTGGGCGGACCGTGGGGAGGGTGAGGGGTTTTGGGAAGC
TGGTTGGGGTGCCAAGTCTCGGCCGTCAGCAGGGGATGCAATGTTTCTCA
AGGCTGATACTGGGGCAGCGGTTGAGTCCTCGGGTTCAGAGGAAGCAGGG
GGAGGGGTGCAAAATGGGCGTGTATGCAATGATTGGAGGGGGGTCGGGGG
AGGGTTGACGGATCCG
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