mRNA_C-tenellus_contig8343.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8343.1.2
Unique NamemRNA_C-tenellus_contig8343.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8343.1.2 vs. uniprot
Match: D7FQ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 1.160e-43
Identity = 66/86 (76.74%), Postives = 73/86 (84.88%), Query Frame = 1
Query:   16 FAQVPGIAEGARKRLADGEGDDCVTNTYQLVGKFLSLRGPDIDGEKVDCVEHCDKFWYWLQSKGINSHRSGIVNAIAEKVNTWIPG 273
              +VPGIA    + LADGEGDD VTNTYQL+GKFL+LRGPD    +VD VEHCDKFWYWLQ+KGINS+RSGIVNAIAEKVNTWIPG
Sbjct:   30 LTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPG 115          
BLAST of mRNA_C-tenellus_contig8343.1.2 vs. uniprot
Match: A0A835Z4N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N7_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.140e-36
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 PTNFIFAQVPGIAEGARKRLADGEGDDCVTNTYQLVGKFLSLRGPDIDGEKVDCVEHCDKFWYWLQSKGINSHRSGIVNAIAEKVNTWIPG 273
            P      +VPGI   A K+LA GEG + V NTYQL+GKFLSL+G D  G+ +  +EHCD+FWYWL+  GI+S+RSGIVNAIAEK NTWIPG
Sbjct:   26 PITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPG 116          
BLAST of mRNA_C-tenellus_contig8343.1.2 vs. uniprot
Match: K0QZN8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZN8_THAOC)

HSP 1 Score: 128 bits (321), Expect = 2.580e-36
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   16 FAQVPGIAEGARKRLADGEGDDCVTNTYQLVGKFLSLRGPDIDGEKVDCVEHCDKFWYWLQSKGINSHRSGIVNAIAEKVNTWIPG 273
              +VPGI   A K+LA+GE D+C+TNTYQL+GKFL L+GPD D  KV+ +EHC+KFWYWLQ K I++HRS IV AIA KVN  +PG
Sbjct:   30 ITEVPGIGPAAAKKLAEGEHDECITNTYQLIGKFLMLKGPDTDDNKVESMEHCEKFWYWLQDKQISAHRSAIVKAIAMKVNGLLPG 115          
BLAST of mRNA_C-tenellus_contig8343.1.2 vs. uniprot
Match: A0A7S2V4V0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V0_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.930e-35
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 PTNFIFAQVPGIAEGARKRLADGEGDDCVTNTYQLVGKFLSLRGPDIDGEKVDCVEHCDKFWYWLQSKGINSHRSGIVNAIAEKVNTWIPG 273
            P      QVPGI + A   LA  + D+ +TN++QL+GKFL ++GPD +  +VDCV HC+KFWY+L+SKG+NSHRSGIV+AIAEK+NT IPG
Sbjct:   24 PITGDITQVPGIGKAAAAALASADDDEPITNSFQLIGKFLLMKGPDTEEGEVDCVMHCNKFWYYLKSKGVNSHRSGIVHAIAEKINTMIPG 114          
BLAST of mRNA_C-tenellus_contig8343.1.2 vs. uniprot
Match: B8CF00_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CF00_THAPS)

HSP 1 Score: 122 bits (307), Expect = 2.160e-34
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   16 FAQVPGIAEGARKRLADGEGDDCVTNTYQLVGKFLSLRGPDIDGEKVDCVEHCDKFWYWLQSKGINSHRSGIVNAIAEKVNTWIPG 273
              +VPGI   A K+LA+ EG++ +TNTYQL+GKFL L+GPD D  KV+  EHC+KFWYWLQ+ GI++HRS IV AIA+KVN  +PG
Sbjct:   13 ITEVPGIGPAAAKKLANVEGEEGITNTYQLIGKFLMLKGPDTDTNKVESFEHCEKFWYWLQAMGISAHRSAIVKAIAQKVNGLLPG 98          
BLAST of mRNA_C-tenellus_contig8343.1.2 vs. uniprot
Match: A0A7S2R0A3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0A3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.390e-33
Identity = 55/98 (56.12%), Postives = 71/98 (72.45%), Query Frame = 1
Query:    4 TNFIFAQ-------VPGIAEGARKRLADGEGD-DCVTNTYQLVGKFLSLRGPDIDGEKVDCVEHCDKFWYWLQSKGINSHRSGIVNAIAEKVNTWIPG 273
            T+F+ +Q       VPGI   A++ LA G+ + D +TNT+QL+GKFL L+GPD D  K+DC+EH +KFWYWL+ KGI SHRS IV AI EK+NT IPG
Sbjct:   20 TDFLRSQITGDVTEVPGIGPAAKRALAGGDDESDRITNTFQLIGKFLMLKGPDEDDMKIDCMEHMEKFWYWLKQKGIKSHRSAIVKAIGEKINTMIPG 117          
BLAST of mRNA_C-tenellus_contig8343.1.2 vs. uniprot
Match: A0A6U3Z2B1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Z2B1_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.700e-32
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 1
Query:   16 FAQVPGIAEGARKRLA---DGEGD-DCVTNTYQLVGKFLSLRGPDIDGEKVDCVEHCDKFWYWLQSKGINSHRSGIVNAIAEKVNTWIPG 273
               VPGI   A K+L    DGE + D VTNTYQL+GKFL L+GPD DG KV+ VEH +KFW++L+ KGI+SHRSGIV AIAEKVNT +PG
Sbjct:   29 LTDVPGIGPAAAKKLGQIGDGETEFDRVTNTYQLIGKFLMLKGPDEDGNKVESVEHMEKFWWYLKQKGISSHRSGIVRAIAEKVNTMLPG 118          
BLAST of mRNA_C-tenellus_contig8343.1.2 vs. uniprot
Match: A0A7S2MQ62_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQ62_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.680e-30
Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   16 FAQVPGIAEGARKRLA---DGEGD-DCVTNTYQLVGKFLSLRGPDIDGEKVDCVEHCDKFWYWLQSKGINSHRSGIVNAIAEKVNTWIPG 273
               VPGI   A ++L    D E D D +TNTYQL+GKFL L+GPD DG KV+ +EH +KFW++L+ KGI+SHRSGIV AIAEKVNT IPG
Sbjct:   38 LTDVPGIGPAAARKLGEIGDEEKDSDRITNTYQLIGKFLMLKGPDEDGHKVESMEHMEKFWWFLKEKGISSHRSGIVRAIAEKVNTMIPG 127          
BLAST of mRNA_C-tenellus_contig8343.1.2 vs. uniprot
Match: D8LR09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR09_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 2.230e-30
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    1 PTNFIFAQVPGIAEGARKRLADGEGDDCVTNTYQLVGKFLSLRGPDIDGEKVDCVEHCDKFWYWLQSKGINSHRSGIVNAIAEKVNTWIPG 273
            P   + ++VPGI   A   L +GEGDDCV NT+QL+GKFL LRG   DG+ +DCVEHCDKF++WL+SK ++++R  IV  IA K N   PG
Sbjct:   52 PITGLLSEVPGIGPTAVGLLGEGEGDDCVKNTFQLIGKFLVLRGSKEDGQLIDCVEHCDKFYWWLKSKAVDNYRGRIVQCIAVKTNLSYPG 142          
BLAST of mRNA_C-tenellus_contig8343.1.2 vs. uniprot
Match: A0A1V9Z038_9STRA (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z038_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.780e-30
Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 PTNFIFAQVPGIAEGARKRLADGEG-DDCVTNTYQLVGKFLSL-RGPDIDGEKVDCVEHCDKFWYWLQSKGINSHRSGIVNAIAEKVNTWIPG 273
            P   +  +VPGI   A K+LA G+   D VTNT+QL+GKFL L R  D   E +DC  HCD FW+WL+SKG+ S+RSGIV AIAEKVNT +PG
Sbjct:   25 PLTGVLTEVPGIGPAAAKKLASGDDIADQVTNTFQLIGKFLMLKRNDDETDEPIDCPTHCDAFWHWLKSKGVTSYRSGIVMAIAEKVNTMVPG 117          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8343.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ44_ECTSI1.160e-4376.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4N7_9STRA1.140e-3661.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0QZN8_THAOC2.580e-3662.79Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2V4V0_9STRA4.930e-3558.24Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8CF00_THAPS2.160e-3460.47Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2R0A3_9STRA3.390e-3356.12Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6U3Z2B1_9STRA3.700e-3263.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2MQ62_9STRA1.680e-3061.11Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
D8LR09_ECTSI2.230e-3053.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9Z038_9STRA2.780e-3056.99Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8343contigC-tenellus_contig8343:69..1801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQ44
Model size273
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.9e-44
EggNOG OGs2ARS8@1|root,2RZN0@2759|Eukaryota
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790099.7272267-CDS-C-tenellus_contig8343:68..1881680790099.7272267-CDS-C-tenellus_contig8343:68..188Choristocarpus tenellus KU2346CDSC-tenellus_contig8343 69..188 -
1680790099.7424679-CDS-C-tenellus_contig8343:1648..18011680790099.7424679-CDS-C-tenellus_contig8343:1648..1801Choristocarpus tenellus KU2346CDSC-tenellus_contig8343 1649..1801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8343.1.2prot_C-tenellus_contig8343.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8343 69..1801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8343.1.2

>prot_C-tenellus_contig8343.1.2 ID=prot_C-tenellus_contig8343.1.2|Name=mRNA_C-tenellus_contig8343.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=91bp
PTNFIFAQVPGIAEGARKRLADGEGDDCVTNTYQLVGKFLSLRGPDIDGE
KVDCVEHCDKFWYWLQSKGINSHRSGIVNAIAEKVNTWIPG
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mRNA from alignment at C-tenellus_contig8343:69..1801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8343.1.2 ID=mRNA_C-tenellus_contig8343.1.2|Name=mRNA_C-tenellus_contig8343.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1733bp|location=Sequence derived from alignment at C-tenellus_contig8343:69..1801- (Choristocarpus tenellus KU2346)
CCGACCAATTTTATTTTTGCGCAGGTCCCAGGCATTGCAGAAGGCGCCAG GAAGAGACTTGCAGATGGGGAAGGTGATGATTGTGTCACTAACACGTACC AGCTGGTGGGAAAATTTCTGTCTCTGCGCGGACCTGACATAGATGGGGAG AAGGTGCAGTTGATCCAATCCATTGCCTGGAAGTGCAACAAGTAGATTTG TGTGTGTGTGTGTTTGCATAGAGTCGATGAGGTTGAAATGAAGTTATTTG AGTAGAGCATAGTGTGTGAGTTCATGTAATGGAGAGAAGAAGATATTCCT TTCGAGTGCACTTTGGAGTTTGAAATGTTCTCTACCATCTCTTCACTATT GTACTGATTGTTGGTGTGTTTTATATTGAGTTGTGGAATGTCTTGCATTT TTCCATTTCCTCGATGTCACTGTGCCCCCCCCCCCGGCCCTTTCTGCATA AAAATATCCCTGACTTGTTTGAAAAGCCTCTCTCCAACACCACATTTTGA ACTGTTGTTGGTGCAATTTAGTTGGGAAAATGAAGACTACTTACGTTGAA ATCCGTCTGTTTTGTGTATACGATTAATTTGGCCATGCATGGCTGGCTTA CCGGACGCCGTTTCATGATTCTTTGGTAGTTTTGAATCAGGAGGTGATTT CCCAGCATGCACCTACTTGAGCTCACTGTACTGTAGGGCTCTCTGCTCAC TGAAGTGGTAAATTTCCGCTGTGTGATTCGCCCTCGGTGCATTGTATTTA GTTGGCACTGGGGTGCACTGTCGCAGTGTTATGCCCCAAAAGATGAACTT GGGCACTACCACAATACCTGTCCAATCTTGGCGTGTTTATGTTGGTGGAA GGCGTGCAAAGGTCGACCGTGACAGTTGTTGTTTTTTCGATTATTTTGTG GGGCTCCACATTCTTACAAAATAAGAAACGTAAGAATCGTTTGGGGTGTC TGCTCAACAGTCGGTGAGGTACGTAGGTACCACTGTTTCAGCGAGGTGTA CTTACTTGTTTGGAGTGGAACTACCGCCTCTGCGGCATGATTCGTGTCTT GTTTTTGACAAAGTTGGGGGCCAGGGTGCTCGCTCAGCTTCACTTGCAGG GCCCATCATGCAGATGGAGAGGAGTTCCGCCAAAGTCAGGGTGTAACAGA TGGAGCAGTGTGAACTGGTTGGGGAGGTCTTTGCGTCCTCCTCTGTACTC TCCGTGCAATACAATACTTATTCGTGTAGGATTTTGATAGCTCTACGTGG TCGAGTGATACTGTGACGTGTTGGTGGTCACTAACAAGAATACAACGGTG AGGTGGAGACTCTGTGTCCCCCCTCGAGGTTTCTCCTGTCGATAAAATAT AAACACGCCTCACCAATTCCTTTCCCCTACGTTGTTTTTTTTCGCTGCCT CCCGTTGCAGTTCCCGTCCCGTCCTTGATGGCCTAAGGGGCCCTGTGTGC GCTTGAGAAGGGGAACATTTCGAAGTATGTCCTCCGGTTTCTTTTTCTTT TCTTTTCTTTTCTTTTCTTTAGGTCTTGATCTCTTCCCTCCATCCCCCGT AGATTCCCCAGCCCATTTGACCTTTGCTTTCCTTTGCTTTGGACTCATGT TGTGTTGGAGCAGGTGGATTGTGTGGAACACTGTGACAAGTTCTGGTACT GGCTCCAGTCCAAGGGAATCAACTCGCATCGAAGCGGGATTGTGAATGCC ATTGCGGAAAAGGTCAATACATGGATACCGGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig8343:69..1801-

>mRNA_C-tenellus_contig8343.1.2 ID=mRNA_C-tenellus_contig8343.1.2|Name=mRNA_C-tenellus_contig8343.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=273bp|location=Sequence derived from alignment at C-tenellus_contig8343:69..1801- (Choristocarpus tenellus KU2346)
CCGACCAATTTTATTTTTGCGCAGGTCCCAGGCATTGCAGAAGGCGCCAG
GAAGAGACTTGCAGATGGGGAAGGTGATGATTGTGTCACTAACACGTACC
AGCTGGTGGGAAAATTTCTGTCTCTGCGCGGACCTGACATAGATGGGGAG
AAGGTGGATTGTGTGGAACACTGTGACAAGTTCTGGTACTGGCTCCAGTC
CAAGGGAATCAACTCGCATCGAAGCGGGATTGTGAATGCCATTGCGGAAA
AGGTCAATACATGGATACCGGGT
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