mRNA_C-tenellus_contig8342.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8342.1.1
Unique NamemRNA_C-tenellus_contig8342.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8342.1.1 vs. uniprot
Match: UPI001D00A395 (secreted RxLR effector protein 161-like n=2 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D00A395)

HSP 1 Score: 125 bits (315), Expect = 1.750e-32
Identity = 69/171 (40.35%), Postives = 103/171 (60.23%), Query Frame = 1
Query:    1 LQHVLRYLSGTTKVGIHYPAGGEMDNGGLVGYGDSDWGNDTASRRSVTGYLILINGAPVAWKSKMQGAVTTSSLEAEWTAMVHGMRHAIFLRGILGELDTLKGVTVWYGDNRGAIQAAITEGFKGRTRHVDIKLKCTREYVSKGVFTVKYIPTALQLADIWTKRLRKKQVE 513
            ++ + RYL GT   GI Y A G  ++  LVGY D+D+     +RRS +GY+ ++N APV+W SK Q  V+ S+ EAE+ A+ HG++ AI+L+ +L EL           DN+ AI+ A    F  RT+H++++    RE V KG   + Y+ T  QLADI+TK L K Q++
Sbjct:   73 VKKIFRYLVGTIDCGIIYGASGSDES--LVGYTDADYAGCPDTRRSRSGYVFMLNNAPVSWCSKKQNIVSLSTTEAEYIALGHGVKEAIWLKRMLKELGIQFESVPMNVDNQSAIKLASNPEFHKRTKHIEVRYHFIREVVEKGTIVLAYVKTQEQLADIFTKPLPKDQLQ 241          
BLAST of mRNA_C-tenellus_contig8342.1.1 vs. uniprot
Match: UPI000B8B293C (uncharacterized protein LOC110789442 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8B293C)

HSP 1 Score: 125 bits (314), Expect = 8.190e-32
Identity = 73/179 (40.78%), Postives = 103/179 (57.54%), Query Frame = 1
Query:    1 LQHVLRYLSGTTKVGIHYPAGGEMDNGGLVGYGDSDWGNDTASRRSVTGYLILINGAPVAWKSKMQGAVTTSSLEAEWTAMVHGMRHAIFLRGILGELDT--LKGVTVWYGDNRGAIQAAITEGFKGRTRHVDIKLKCTREYVSKGVFTVKYIPTALQLADIWTKRLRKKQVEDFVETV 531
            L H LRYL+ T   GI   A    D   L  + DSDW +   SRRS+TGY++L+ G+PV+WKSK QG V+ SS EAE+ AM        +L  +L +L    LK VT+ + DN+ A+  A    F  RT+H++I    TR+ V +G+  + Y+PT  QLADI+TK L   Q +  +  +
Sbjct:  126 LHHTLRYLAHTAGQGILLKA---ADTISLQAFSDSDWASCPDSRRSITGYILLLGGSPVSWKSKKQGTVSKSSAEAEYRAMAAAASEVTWLVSLLEDLGVHNLKPVTL-HCDNQSALHIARNPVFHERTKHIEIDCHFTRDKVLEGLLHLSYLPTQQQLADIFTKPLSSTQFQTLLSKI 300          
BLAST of mRNA_C-tenellus_contig8342.1.1 vs. uniprot
Match: UPI0017863345 (secreted RxLR effector protein 161-like n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI0017863345)

HSP 1 Score: 124 bits (310), Expect = 9.510e-32
Identity = 67/174 (38.51%), Postives = 101/174 (58.05%), Query Frame = 1
Query:    1 LQHVLRYLSGTTKVGIHYPAGGEMDNGGLVGYGDSDWGNDTASRRSVTGYLILINGAPVAWKSKMQGAVTTSSLEAEWTAMVHGMRHAIFLRGILGELDTLKGVTVW-YGDNRGAIQAAITEGFKGRTRHVDIKLKCTREYVSKGVFTVKYIPTALQLADIWTKRLRKKQVEDF 519
            ++ ++RYL GT    + Y + G      L G  D+DW +D   RRS TGYL  ++ A + W SK Q  V  SS EAE+ AM   ++ A++L+ + GELD   G ++  Y DN+ AI+ A ++GF+ R++H+DIK    RE V  G+ ++KYIPT     D  TK + K + + F
Sbjct:   76 VKRIMRYLKGTKDYKLKYSSNGSPQ---LHGSSDADWASDIDKRRSCTGYLFKMSNAAINWASKRQPTVALSSTEAEYMAMSSAVQEAVWLKQLSGELDYGGGSSIQLYCDNQSAIKLAESDGFRPRSKHIDIKYHHLRETVENGIISIKYIPTVEMAGDSLTKAVAKGKNDFF 246          
BLAST of mRNA_C-tenellus_contig8342.1.1 vs. uniprot
Match: A0A811UVA7_CERCA ((Mediterranean fruit fly) hypothetical protein n=1 Tax=Ceratitis capitata TaxID=7213 RepID=A0A811UVA7_CERCA)

HSP 1 Score: 129 bits (325), Expect = 1.610e-31
Identity = 71/172 (41.28%), Postives = 102/172 (59.30%), Query Frame = 1
Query:    4 QHVLRYLSGTTKVGIHYPAGGEMDNGGLVGYGDSDWGNDTASRRSVTGYLILINGAPVAWKSKMQGAVTTSSLEAEWTAMVHGMRHAIFLRGILGE--LDTLKGVTVWYGDNRGAIQAAITEGFKGRTRHVDIKLKCTREYVSKGVFTVKYIPTALQLADIWTKRLRKKQVE 513
            + VLRYL+GT   G+ Y       +  L+GY D+DWG  T  RRS TGY+ L++GA ++WKS+ Q  V  SS EAE+ ++    + A++LR +L E  L  L   T+ Y DNRGA   A    F  RT+H+DIK    RE +S G+F++K++ T   +AD+ TK L +   E
Sbjct:  750 KRVLRYLAGTANKGLLY----RKTDLPLIGYADADWGGCTTDRRSYTGYVFLLSGAVISWKSQKQRTVALSSTEAEYVSLAESAKEAVYLRSLLNEIGLQKLADATI-YVDNRGAQCLANDPVFHARTKHIDIKHHFVRECISAGLFSLKHVSTQEMIADVMTKPLARANHE 916          
BLAST of mRNA_C-tenellus_contig8342.1.1 vs. uniprot
Match: A0A0J7KMA5_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KMA5_LASNI)

HSP 1 Score: 124 bits (310), Expect = 1.670e-31
Identity = 60/165 (36.36%), Postives = 96/165 (58.18%), Query Frame = 1
Query:    1 LQHVLRYLSGTTKVGIHYPAGGEMDNGGLVGYGDSDWGNDTASRRSVTGYLILINGAPVAWKSKMQGAVTTSSLEAEWTAMVHGMRHAIFLRGILGELDTLKGVTVWYGDNRGAIQAAITEGFKGRTRHVDIKLKCTREYVSKGVFTVKYIPTALQLADIWTKRL 495
            ++ +LRYL GTT +GI Y A G  +   L+ Y D+D+ N   +R+S +G ++++   PV W S+ Q  V  S+ EAE+ A     +  ++LR +L  +D  +  T  Y DN+GA++    +    RT+H+D++    R++  K   TV Y+P+  QLADI TKRL
Sbjct:  101 IKRILRYLKGTTSMGITYRANGNQE---LIAYSDADYANCVQTRKSTSGLVLILANGPVVWTSQQQQIVARSTTEAEYVAAAEATKQVLWLRNLLKSIDIDQSTTTLYVDNQGALKIVENQEHHRRTKHIDVRYHLIRDHTMKKDITVDYVPSEEQLADILTKRL 262          
BLAST of mRNA_C-tenellus_contig8342.1.1 vs. uniprot
Match: W8B6G9_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Ceratitis capitata TaxID=7213 RepID=W8B6G9_CERCA)

HSP 1 Score: 129 bits (325), Expect = 1.680e-31
Identity = 71/172 (41.28%), Postives = 102/172 (59.30%), Query Frame = 1
Query:    4 QHVLRYLSGTTKVGIHYPAGGEMDNGGLVGYGDSDWGNDTASRRSVTGYLILINGAPVAWKSKMQGAVTTSSLEAEWTAMVHGMRHAIFLRGILGE--LDTLKGVTVWYGDNRGAIQAAITEGFKGRTRHVDIKLKCTREYVSKGVFTVKYIPTALQLADIWTKRLRKKQVE 513
            + VLRYL+GT   G+ Y       +  L+GY D+DWG  T  RRS TGY+ L++GA ++WKS+ Q  V  SS EAE+ ++    + A++LR +L E  L  L   T+ Y DNRGA   A    F  RT+H+DIK    RE +S G+F++K++ T   +AD+ TK L +   E
Sbjct: 1199 KRVLRYLAGTANKGLLY----RKTDLPLIGYADADWGGCTTDRRSYTGYVFLLSGAVISWKSQKQRTVALSSTEAEYVSLAESAKEAVYLRSLLNEIGLQKLADATI-YVDNRGAQCLANDPVFHARTKHIDIKHHFVRECISAGLFSLKHVSTQEMIADVMTKPLARANHE 1365          
BLAST of mRNA_C-tenellus_contig8342.1.1 vs. uniprot
Match: A0A0A1WR38_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WR38_ZEUCU)

HSP 1 Score: 126 bits (317), Expect = 2.630e-31
Identity = 68/176 (38.64%), Postives = 101/176 (57.39%), Query Frame = 1
Query:    1 LQHVLRYLSGTTKVGIHYPAGGEMDNGGLVGYGDSDWGNDTASRRSVTGYLILINGAPVAWKSKMQGAVTTSSLEAEWTAMVHGMRHAIFLRGILGELDT--LKGVTVWYGDNRGAIQAAITEGFKGRTRHVDIKLKCTREYVSKGVFTVKYIPTALQLADIWTKRLRKKQVEDFV 522
            + H+LRYL+ T  + +HY A     N  L GY D+DWG D   RRS TGY+ L+ G  ++WKS+ Q  V  SS EAE+ +M   ++ A+ LR I+ E+    ++  TV YGDN  A   A       RT+H+DI+    R+ V +G   ++Y+ T   +ADI+TK L KK+  + +
Sbjct:  256 IMHILRYLAATIDMKMHYRA----CNKPLKGYADADWGGDRIDRRSYTGYVFLLAGGAISWKSEKQDCVALSSTEAEYLSMSSAVKEALHLRRIIIEIGCGDVRTSTVLYGDNLSAQNLAKNPVHHARTKHIDIRYHFVRDIVERGEIRLEYVSTNQMIADIFTKNLPKKKHSELL 427          
BLAST of mRNA_C-tenellus_contig8342.1.1 vs. uniprot
Match: A0A4Z0A525_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A525_9AGAM)

HSP 1 Score: 122 bits (306), Expect = 1.190e-30
Identity = 65/161 (40.37%), Postives = 98/161 (60.87%), Query Frame = 1
Query:    4 QHVLRYLSGTTKVGIHYPAGGEMDNGGLVGYGDSDWGNDTASRRSVTGYLILINGAPVAWKSKMQGAVTTSSLEAEWTAMVHGMRHAIFLRGILGELDTLK-GVTVWYGDNRGAIQAAITEGFKGRTRHVDIKLKCTREYVSKGVFTVKYIPTALQLADIW 483
            + VLRY+ GT  + + Y  GG+      +GY D+D  ND  SRRS++GY   ++G P++W SK Q  V  S+  AE+ A+ H  + A++LR +LGELD  +   T+ + DN+ +I  +  + F  RT+HVDIK    RE+V +G   ++YIPTA   ADI+
Sbjct:  141 KRVLRYVKGTLDLALVY--GGDDGPWVPIGYADADHANDLDSRRSISGYAFFLSGTPISWSSKKQPTVADSTAVAEYLAIAHATKEALWLRSLLGELDFPQDSPTLIHCDNQASIAMSKEQVFHARTKHVDIKYHFIREHVDRGQIRLEYIPTAENTADIY 299          
BLAST of mRNA_C-tenellus_contig8342.1.1 vs. uniprot
Match: A0A6V7Q365_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7Q365_ANACO)

HSP 1 Score: 119 bits (298), Expect = 2.020e-30
Identity = 64/162 (39.51%), Postives = 96/162 (59.26%), Query Frame = 1
Query:   10 VLRYLSGTTKVGIHYPAGGEMDNGGLVGYGDSDWGNDTASRRSVTGYLILINGAPVAWKSKMQGAVTTSSLEAEWTAMVHGMRHAIFLRGILGELDTLKGVTVWYGDNRGAIQAAITEGFKGRTRHVDIKLKCTREYVSKGVFTVKYIPTALQLADIWTKRL 495
            +LRYL GTT   + +   G   +G ++GY DSD+  D   RRS++GY+  I G  V+WK+ +Q  V  S+ EAE+ AM  G++ A++LRG+ GEL +    T+ Y D++ AI  +  + F  RT+H+D+K    R+ + K   TVK I T    AD+ TK L
Sbjct:   36 ILRYLRGTTNTCLEF---GRCKDG-VIGYVDSDFAGDLDRRRSLSGYVFSIGGCAVSWKASLQPIVALSTTEAEYIAMTEGVKEAMWLRGLFGELTSYWDPTIVYSDSQSAIHLSKDQMFHERTKHIDVKFHFVRDVIGKRTVTVKKIGTEDNPADMLTKSL 193          
BLAST of mRNA_C-tenellus_contig8342.1.1 vs. uniprot
Match: A0A8H6UGS1_9EURO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aspergillus hiratsukae TaxID=1194566 RepID=A0A8H6UGS1_9EURO)

HSP 1 Score: 125 bits (313), Expect = 2.360e-30
Identity = 73/182 (40.11%), Postives = 102/182 (56.04%), Query Frame = 1
Query:    1 LQHVLRYLSGTTKVGIHYPAGGEMDNGGL-----VGYGDSDWGND-TASRRSVTGYLILINGAPVAWKSKMQGAVTTSSLEAEWTAMVHGMRHAIFLRGILGELDTLKGVTV-WYGDNRGAIQAAITEGFKGRTRHVDIKLKCTREYVSKGVFTVKYIPTALQLADIWTKRLRKKQVEDFVE 525
            L HVL+YL GT  +G+HY   G   N         GY DSDWG   T +RRSV+GY+  + GAP++W+S+ Q  V TSS EAE+ A     R A ++R +L +L    G  V  Y DN+GAI          R++H+DI+   TR+ V +G+  VK IPT   +AD  TK L  +  + F++
Sbjct:  325 LIHVLKYLKGTRHLGLHYLRRGTNTNADANSTTTTGYTDSDWGGPHTDARRSVSGYVFTLAGAPISWQSRKQTCVATSSNEAEYIAASEASREAWWIRAVLKDLGINHGSAVPLYMDNKGAIDLTTALNGTKRSKHIDIRFHYTRDLVKQGIIAVKQIPTKEMVADGMTKPLATEPHKAFLQ 506          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8342.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001D00A3951.750e-3240.35secreted RxLR effector protein 161-like n=2 Tax=Co... [more]
UPI000B8B293C8.190e-3240.78uncharacterized protein LOC110789442 n=1 Tax=Spina... [more]
UPI00178633459.510e-3238.51secreted RxLR effector protein 161-like n=1 Tax=Rh... [more]
A0A811UVA7_CERCA1.610e-3141.28(Mediterranean fruit fly) hypothetical protein n=1... [more]
A0A0J7KMA5_LASNI1.670e-3136.36Integrase core domain protein n=1 Tax=Lasius niger... [more]
W8B6G9_CERCA1.680e-3141.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A1WR38_ZEUCU2.630e-3138.64Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Z0A525_9AGAM1.190e-3040.37Uncharacterized protein (Fragment) n=1 Tax=Hericiu... [more]
A0A6V7Q365_ANACO2.020e-3039.51Uncharacterized protein n=1 Tax=Ananas comosus var... [more]
A0A8H6UGS1_9EURO2.360e-3040.11Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8342contigC-tenellus_contig8342:5823..6362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog36914.XP_001526362.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size540
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.19e-32
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,3RTT4@4891|Saccharomycetes,47E39@766764|Debaryomycetaceae
DescriptionTransposable element
Cds size540
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790099.674658-CDS-C-tenellus_contig8342:5822..63621680790099.674658-CDS-C-tenellus_contig8342:5822..6362Choristocarpus tenellus KU2346CDSC-tenellus_contig8342 5823..6362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8342.1.1prot_C-tenellus_contig8342.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8342 5823..6362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8342.1.1

>prot_C-tenellus_contig8342.1.1 ID=prot_C-tenellus_contig8342.1.1|Name=mRNA_C-tenellus_contig8342.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=180bp
LQHVLRYLSGTTKVGIHYPAGGEMDNGGLVGYGDSDWGNDTASRRSVTGY
LILINGAPVAWKSKMQGAVTTSSLEAEWTAMVHGMRHAIFLRGILGELDT
LKGVTVWYGDNRGAIQAAITEGFKGRTRHVDIKLKCTREYVSKGVFTVKY
IPTALQLADIWTKRLRKKQVEDFVETVLT*
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mRNA from alignment at C-tenellus_contig8342:5823..6362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8342.1.1 ID=mRNA_C-tenellus_contig8342.1.1|Name=mRNA_C-tenellus_contig8342.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=540bp|location=Sequence derived from alignment at C-tenellus_contig8342:5823..6362- (Choristocarpus tenellus KU2346)
CTGCAACATGTTCTACGATACCTATCGGGCACCACGAAGGTAGGGATACA CTATCCTGCTGGTGGTGAAATGGACAATGGGGGCCTGGTCGGGTATGGAG ACTCAGACTGGGGCAATGACACTGCATCAAGGCGGAGCGTGACAGGGTAT CTAATACTCATCAATGGAGCACCTGTAGCATGGAAATCCAAGATGCAGGG AGCTGTAACCACATCTTCATTAGAGGCGGAATGGACAGCGATGGTGCATG GAATGAGGCATGCAATATTCCTCAGAGGCATCCTGGGGGAGCTGGACACA CTCAAAGGGGTCACGGTTTGGTATGGAGACAATCGAGGAGCGATACAAGC AGCGATAACCGAAGGTTTCAAAGGACGGACGAGGCATGTCGACATCAAGC TGAAATGCACCAGGGAGTATGTTAGCAAAGGAGTTTTTACGGTAAAATAT ATTCCCACGGCACTCCAACTTGCAGACATCTGGACCAAAAGATTACGCAA GAAGCAGGTAGAAGACTTTGTAGAGACTGTGTTGACTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig8342:5823..6362-

>mRNA_C-tenellus_contig8342.1.1 ID=mRNA_C-tenellus_contig8342.1.1|Name=mRNA_C-tenellus_contig8342.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=540bp|location=Sequence derived from alignment at C-tenellus_contig8342:5823..6362- (Choristocarpus tenellus KU2346)
CTGCAACATGTTCTACGATACCTATCGGGCACCACGAAGGTAGGGATACA
CTATCCTGCTGGTGGTGAAATGGACAATGGGGGCCTGGTCGGGTATGGAG
ACTCAGACTGGGGCAATGACACTGCATCAAGGCGGAGCGTGACAGGGTAT
CTAATACTCATCAATGGAGCACCTGTAGCATGGAAATCCAAGATGCAGGG
AGCTGTAACCACATCTTCATTAGAGGCGGAATGGACAGCGATGGTGCATG
GAATGAGGCATGCAATATTCCTCAGAGGCATCCTGGGGGAGCTGGACACA
CTCAAAGGGGTCACGGTTTGGTATGGAGACAATCGAGGAGCGATACAAGC
AGCGATAACCGAAGGTTTCAAAGGACGGACGAGGCATGTCGACATCAAGC
TGAAATGCACCAGGGAGTATGTTAGCAAAGGAGTTTTTACGGTAAAATAT
ATTCCCACGGCACTCCAACTTGCAGACATCTGGACCAAAAGATTACGCAA
GAAGCAGGTAGAAGACTTTGTAGAGACTGTGTTGACTTGA
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