mRNA_C-tenellus_contig834.6.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig834.6.1 vs. uniprot
Match: D7G6E6_ECTSI (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E6_ECTSI) HSP 1 Score: 333 bits (853), Expect = 9.160e-111 Identity = 173/237 (73.00%), Postives = 202/237 (85.23%), Query Frame = 1 Query: 1 MAVIVSAQLVNLTDKSELKLVEAVASLLPSGKAEFTKACSDLIAEANAPELIRKLLGQRNAILGMERTEDVEGCFGILFSLLHKTDNPKVAMPALSMEISGNILEVVDGHAALRLKLVTNLYNMLPVCSASQLDVLVSLIRYAHVAKLTGMLSTFFTCADEWIKGWDLSVHDQRRLYLLISETLGDEGKDVESQKFLMKYLVTFDGASAEELSQVKAAAVKGCIGAVKAPIVSFTEQ 711 MA+ VSAQLVNL+ K+ELKLVEAVA +PSG+A+F+KAC+ LI ANAP+LIRK+L QRN IL M +T+DVEGCFGILFSLL KTDNPK A+PALSMEI+ +LE VD A LRLKLVTNLYNMLPV +A QL+VL+ +IRYA AKL MLS+FF D+WIKGW+LSV DQRRLYLLIS+TLG EGK VESQKFLMKYL T+DGA+ EL++VKAAAV+GCIGAVK+PIVSFTEQ Sbjct: 1 MAMAVSAQLVNLSAKAELKLVEAVAKAMPSGQAQFSKACTALITNANAPDLIRKVLEQRNVILEMSKTDDVEGCFGILFSLLFKTDNPKAAVPALSMEIATKVLEKVDDRAPLRLKLVTNLYNMLPVRTAGQLEVLLLVIRYAKEAKLVAMLSSFFAGVDDWIKGWELSVADQRRLYLLISDTLGSEGKAVESQKFLMKYLATYDGATTAELAEVKAAAVRGCIGAVKSPIVSFTEQ 237
BLAST of mRNA_C-tenellus_contig834.6.1 vs. uniprot
Match: A0A835Z3J7_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J7_9STRA) HSP 1 Score: 202 bits (514), Expect = 1.740e-59 Identity = 115/238 (48.32%), Postives = 154/238 (64.71%), Query Frame = 1 Query: 13 VSAQLVNLTDKSELKLVEAVASLL--PSGKAEFTKACSDLIAEANAPELIRKLLGQRNAILGMERTEDVEGCFGILFSLLHKTDNPKVAMPALSMEISGNILEVVDGHAALRLKLVTNLYNMLPVCSASQLDVLVSLIRYAHVAKLTGMLSTFFTCADEWIKGWDLSVHDQRRLYLLISETLGDEGKDVESQKFLMKYLVTFDG---ASAEELSQVKAAAVKGCIGAVKAPIVSFTEQ 711 VSAQLVNL ++ +KLV AVA+ L P+ + F CS LI EANA ELIRKLLG R +L ++ E +EGCF +LF LLH+ +P MP L E++ +L+ D A LRL+L T+LYNMLP ++ Q +VL+++I+YA L ML++FF + + W LS+ DQRRL+LL+++ L SQ FLMKYLVTFD S +V+AAA +G +GAVKAPIVSF E Sbjct: 3 VSAQLVNLGPEAPVKLVGAVAAALKDPAEQNAFRTECSKLINEANAAELIRKLLGHRQVMLSFDKEETIEGCFAVLFHLLHRLPDPAKNMPVLVPEVTAALLDSED-KAGLRLRLATSLYNMLPAKTSVQFEVLLAIIKYAASTGLLAMLNSFFASMESMLAAWQLSLKDQRRLFLLVADVLSKASDAAGSQVFLMKYLVTFDNDAEGSKTSAKEVRAAAARGAVGAVKAPIVSFMEH 239
BLAST of mRNA_C-tenellus_contig834.6.1 vs. uniprot
Match: A0A8K0H384_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0H384_9ROSA) HSP 1 Score: 87.8 bits (216), Expect = 1.770e-16 Identity = 60/182 (32.97%), Postives = 98/182 (53.85%), Query Frame = 1 Query: 148 ELIRKLLGQRNAILGMERTEDVEGCFGILFSLLHKTDNPKVAMPALSMEISGNILEVVDGHAALRLKLVTNLYNMLPVCSASQLDVLVSLIRYAHVAKLTGMLSTFFTCADEWIKGWDLSVHDQRRLYLLISETLGD-EGKDVESQKFLMKYLVTFDGASAEELSQVKAAAVKGCIGAVKAP 690 +L +L I +D+E F ++ +++ K+++P A+ + IS I + + ALRLK++ NLYN+L S+ V + + A K+T + FT D ++K W++ + DQR+L+L IS+ L + + +S KFL KYL+TF G A LS+ K AV + VKAP Sbjct: 55 DLASLMLTSAEVIFSKVAEKDLECIFTVICNVVTKSESPDEALEMAKL-ISAKITQQPNDKPALRLKILFNLYNLLEN-PYSRFYVYMKTLNLAIDGKVTEHIIPSFTKIDSFLKEWNIGIVDQRKLFLAISDVLKENKSAPKDSFKFLTKYLMTFSGDDAHNLSEAKEEAVHTIVEFVKAP 234
BLAST of mRNA_C-tenellus_contig834.6.1 vs. uniprot
Match: A0A7S2UX52_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX52_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 9.980e-16 Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 1 Query: 424 YAHVAKLTGMLSTFFTC-ADEWIKGWDLSVHDQRRLYLLISETLGDEGKDVESQKFLMKYLVTF-DGASAEELSQVKAAAVKGCIGAVKAPIVSFTE 708 +A + G+LS+FF EW++ +DL DQR LYLL++++L E+QKFL+KYL T+ D A A+ LS VK A +G +GA++ PIVSFTE Sbjct: 1 FAMASSQNGLLSSFFIKQGQEWVELFDLETGDQRTLYLLMADSLVQSQHSHEAQKFLLKYLATYEDEADAKALSAVKEHAARGAVGAIRFPIVSFTE 97
BLAST of mRNA_C-tenellus_contig834.6.1 vs. uniprot
Match: UPI001CB957E6 (eukaryotic translation initiation factor 3 subunit M-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB957E6) HSP 1 Score: 84.0 bits (206), Expect = 4.030e-15 Identity = 58/184 (31.52%), Postives = 93/184 (50.54%), Query Frame = 1 Query: 148 ELIRKLLGQRNAILGMERTEDVEGCFGILFSLLHKTDNPKVAMPALSMEISGNILEVVDGHAALRLKLVTNLYNML--PVCSASQLDVLVSLIRYAHVAKLTGMLSTFFTCADEWIKGWDLSVHDQRRLYLLISETLGD-EGKDVESQKFLMKYLVTFDGASAEELSQVKAAAVKGCIGAVKAP 690 +L ++ + ++ +D+E F ++ +L+ K ++ + + +S I++ ALRLK++ NLYN+L P C + V + ++ A K+T + F D ++K WDL VHDQR LYL IS L + + E KFL KYL TF G A + + K A I +KAP Sbjct: 55 DLASLMITSADLLVSKASDKDLECIFTVICNLVKKPESTDEILEMAKL-LSTKIVQQPTDKPALRLKILFNLYNLLENPYC---RFYVYMGALKLAIDGKVTEHIIPSFKKIDSFLKEWDLGVHDQRELYLAISNVLKEHKSSPKEILKFLSKYLATFSGEDAHVMEEAKEEAAHAIIEFIKAP 234
BLAST of mRNA_C-tenellus_contig834.6.1 vs. uniprot
Match: D7SVA4_VITVI (Eukaryotic translation initiation factor 3 subunit M n=3 Tax=Vitis TaxID=3603 RepID=D7SVA4_VITVI) HSP 1 Score: 83.2 bits (204), Expect = 7.510e-15 Identity = 61/184 (33.15%), Postives = 98/184 (53.26%), Query Frame = 1 Query: 148 ELIRKLLGQRNAILGMERTEDVEGCFGILFSLLHKTDNPKVAMPALSMEISGNILEVVDGHAALRLKLVTNLYNMLPVCSASQLDVLVSLIRYAHVAKLTGMLSTFFTCADEWIKGWDLSVHDQRRLYLLISETLGDE---GKDVESQKFLMKYLVTFDGASAEELSQVKAAAVKGCIGAVKAP 690 +L +L + + +D+E F ++ +L+ K+++P A+ ++ IS I + + AALRLK++ NLYN+L S+ V + + A K+T + F D ++K W++ + DQR LYL IS L + GKD KFL KYL TF G A +S+ K AV+ + V+AP Sbjct: 55 DLASLMLTSADLMFSKASDKDLECIFTVICNLVTKSESPDEALE-MAKFISAKITQQPNDKAALRLKILFNLYNLLEN-PYSRFYVYMKALNLAVNGKVTEHIIPSFKMMDSFLKEWNIGILDQRALYLNISNILKENKSLGKDYF--KFLTKYLATFSGEDAYTMSEAKEEAVRTIMEFVRAP 234
BLAST of mRNA_C-tenellus_contig834.6.1 vs. uniprot
Match: A0A7S3DAN4_9EUKA (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DAN4_9EUKA) HSP 1 Score: 81.6 bits (200), Expect = 2.710e-14 Identity = 52/172 (30.23%), Postives = 91/172 (52.91%), Query Frame = 1 Query: 190 GMERTEDVEGCFGILFSLLHKTDNPKVAMPALSMEISGNILEVVDGHAAL---RLKLVTNLYNML--PVCSASQLDVLVSLIRYAHVAKLTGMLSTFFTCADEWIKGWDLSVHDQRRLYLLISETLGDEGKDVESQKFLMKYLVTFDGASAEELSQVKAAAVKGCIGAVKAP 690 G + + ++E F I+ +L +VA N++EV+ + L R +++ + YN + P+ + + V V+L+R+A KL ++ + AD W+K W S D R++YL ISE L +E + + KFL+KYL T++G+ + EL +VK A + A+ P Sbjct: 83 GNKTSGEIESMFTIVIDMLAAVKADEVAAKL------DNVIEVLSLNHNLPETRFRILVSTYNSIDEPLPLSLRARVFVALVRFAASNKLLVSIANQLSNADAWVKEWQCSAEDIRKVYLTISEALAEEKQKALAHKFLVKYLNTYEGSESAELGEVKELAADAIVEAISLP 248
BLAST of mRNA_C-tenellus_contig834.6.1 vs. uniprot
Match: A0A0K9QZ29_SPIOL (Eukaryotic translation initiation factor 3 subunit M n=3 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9QZ29_SPIOL) HSP 1 Score: 77.4 bits (189), Expect = 7.760e-13 Identity = 57/216 (26.39%), Postives = 104/216 (48.15%), Query Frame = 1 Query: 46 SELKLVEAVASLLPSGKAEFTKACSDLIAEANAPELIRKLLGQRNAILGMERTEDVEGCFGILFSLLHKTDNPKVAMPALSMEISGNILEVVDGHAALRLKLVTNLYNMLPVCSASQLDVLVSLIRYAHVAKLTGMLSTFFTCADEWIKGWDLSVHDQRRLYLLISETLGD-EGKDVESQKFLMKYLVTFDGASAEELSQVKAAAVKGCIGAVKAP 690 SEL +A + + A ++ + +A +L +L + + +D E + ++ +L+ K++NP+ + + + IS I++ + LRLK++ NLYN+L + S+ V ++++ A K+T + D ++ W+LSV DQR L+L + L + + ES FL KYL TF + + + K A I VK P Sbjct: 21 SELAWADAGTEVAQAQVARSSQEAQECMAMERWIDLASLILTSADLVFSKVAEKDTECIYTVICNLVTKSENPEEVLEIVKL-ISAKIVQHPNEKPTLRLKILFNLYNLLED-AYSRFHVYLNVLNLAASGKVTEHVIPSIKKIDSFLSEWNLSVQDQRELFLAVFNALKESKSSGKESFNFLSKYLATFSPEDEQAMIEAKEEAANAIIEFVKGP 234
BLAST of mRNA_C-tenellus_contig834.6.1 vs. uniprot
Match: A0A2J6KR62_LACSA (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6KR62_LACSA) HSP 1 Score: 75.9 bits (185), Expect = 2.650e-12 Identity = 56/182 (30.77%), Postives = 92/182 (50.55%), Query Frame = 1 Query: 148 ELIRKLLGQRNAILGMERTEDVEGCFGILFSLLHKTDNPKVAMPALSMEISGNILEVVDGHAALRLKLVTNLYNMLPVCSASQLDVLVSLIRYAHVAKLTGMLSTFFTCADEWIKGWDLSVHDQRRLYLLISETLGDEGKDV-ESQKFLMKYLVTFDGASAEELSQVKAAAVKGCIGAVKAP 690 +L ++ + + +D+E F ++ +L+ K ++ ++ +S IS I + + +LRLK++ NLYNML L V + + A K+ + F D +K W+L +HDQR+L+L IS L + E+ KFL KYL TF G A ++++ K A I VKAP Sbjct: 55 DLASLMITSADLVFSKASEKDLECIFTVICNLVKKPESLDESLE-ISKLISTKIAQQPNEKPSLRLKILFNLYNMLENPYGRFL-VYMKALEVAANGKVMDHIIPSFKNTDTLLKEWNLGLHDQRQLFLAISNILKEHKSSTKENLKFLTKYLATFSGDDAHDINEAKEEAAYTIIEFVKAP 234
BLAST of mRNA_C-tenellus_contig834.6.1 vs. uniprot
Match: A0A2J6LV32_LACSA (Eukaryotic translation initiation factor 3 subunit M n=4 Tax=Lactuca TaxID=4235 RepID=A0A2J6LV32_LACSA) HSP 1 Score: 73.6 bits (179), Expect = 1.550e-11 Identity = 59/216 (27.31%), Postives = 101/216 (46.76%), Query Frame = 1 Query: 46 SELKLVEAVASLLPSGKAEFTKACSDLIAEANAPELIRKLLGQRNAILGMERTEDVEGCFGILFSLLHKTDNPKVAMPALSMEISGNILEVVDGHAALRLKLVTNLYNMLPVCSASQLDVLVSLIRYAHVAKLTGMLSTFFTCADEWIKGWDLSVHDQRRLYLLISETLGD-EGKDVESQKFLMKYLVTFDGASAEELSQVKAAAVKGCIGAVKAP 690 +E+ EA + A D + +L +L + + +D+E F I+ +L+ K ++ M ++ +S + + + A+RLK++ NLYN+L S+ V ++ ++ A K+ + F D ++K W+L VHDQR L+L IS L + + E+ KFL KYL TF A + + K A I VK+P Sbjct: 21 AEMSWAEAGPEVAEPQVASLCLEAQDCMIAGRWFDLASLMLTSADLVFPKASDKDLECIFTIICNLVKKPESLD-EMLEMAKLLSTKVAQQPNDKPAIRLKILFNLYNLLEN-PYSRFYVYMNALKLAMNGKVIEHIIPSFKKIDSFLKEWNLGVHDQRELFLTISNILKEHKSSPKETFKFLTKYLATFSDEDAHTMEEAKEEAAYTIIEFVKSP 234 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig834.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig834.6.1 >prot_C-tenellus_contig834.6.1 ID=prot_C-tenellus_contig834.6.1|Name=mRNA_C-tenellus_contig834.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=237bp MAVIVSAQLVNLTDKSELKLVEAVASLLPSGKAEFTKACSDLIAEANAPEback to top mRNA from alignment at C-tenellus_contig834:13092..16048+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig834.6.1 ID=mRNA_C-tenellus_contig834.6.1|Name=mRNA_C-tenellus_contig834.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2957bp|location=Sequence derived from alignment at C-tenellus_contig834:13092..16048+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig834:13092..16048+ >mRNA_C-tenellus_contig834.6.1 ID=mRNA_C-tenellus_contig834.6.1|Name=mRNA_C-tenellus_contig834.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=711bp|location=Sequence derived from alignment at C-tenellus_contig834:13092..16048+ (Choristocarpus tenellus KU2346)back to top |