mRNA_C-tenellus_contig8335.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8335.1.1
Unique NamemRNA_C-tenellus_contig8335.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8335.1.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.680e-6
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 2 
Query:  194 RSMLGVHFRADNIDGMLFGEVIAVRILQEELSGLPEGEMAFWEFDLFNGDTIKIEREG 367
            R+M GVH+R D+  G+L GE+ AVRILQ+E    PE   A +EF+L +G+TI++E +G
Sbjct:  538 RNMCGVHWRIDSEQGLLLGEMAAVRILQQEAVTFPEN--AGYEFNLMSGETIRLETDG 593
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8335.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B7ZGM6_9PHAE1.680e-650.00Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8335contigC-tenellus_contig8335:4221..6368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size805
Hectar predicted targeting categoryother localisation
Exons4
Cds size303
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8335.1.1prot_C-tenellus_contig8335.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8335 4420..6065 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790099.19043-UTR-C-tenellus_contig8335:4220..44191680790099.19043-UTR-C-tenellus_contig8335:4220..4419Choristocarpus tenellus KU2346UTRC-tenellus_contig8335 4221..4419 +
1680790099.3079472-UTR-C-tenellus_contig8335:6065..63681680790099.3079472-UTR-C-tenellus_contig8335:6065..6368Choristocarpus tenellus KU2346UTRC-tenellus_contig8335 6066..6368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790099.2652009-CDS-C-tenellus_contig8335:4419..45001680790099.2652009-CDS-C-tenellus_contig8335:4419..4500Choristocarpus tenellus KU2346CDSC-tenellus_contig8335 4420..4500 +
1680790099.2773736-CDS-C-tenellus_contig8335:4887..49591680790099.2773736-CDS-C-tenellus_contig8335:4887..4959Choristocarpus tenellus KU2346CDSC-tenellus_contig8335 4888..4959 +
1680790099.2869358-CDS-C-tenellus_contig8335:5378..54551680790099.2869358-CDS-C-tenellus_contig8335:5378..5455Choristocarpus tenellus KU2346CDSC-tenellus_contig8335 5379..5455 +
1680790099.2983954-CDS-C-tenellus_contig8335:5992..60651680790099.2983954-CDS-C-tenellus_contig8335:5992..6065Choristocarpus tenellus KU2346CDSC-tenellus_contig8335 5993..6065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8335.1.1

>prot_C-tenellus_contig8335.1.1 ID=prot_C-tenellus_contig8335.1.1|Name=mRNA_C-tenellus_contig8335.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=101bp
MLGVHFRADNIDGMLFGEVIAVRILQEELSGLPEGEMAFWEFDLFNGDTI
KIEREGNTIGGVFFPGPYDPDLFPEEECKDKECKDRELERTNRLYNRGYY
*
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mRNA from alignment at C-tenellus_contig8335:4221..6368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8335.1.1 ID=mRNA_C-tenellus_contig8335.1.1|Name=mRNA_C-tenellus_contig8335.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2148bp|location=Sequence derived from alignment at C-tenellus_contig8335:4221..6368+ (Choristocarpus tenellus KU2346)
GAAACATCCTATCAGAAGGAATTGAAACGATTGAAGCTTGCCTCAATGCT
TCGAACTCAGAATCTTGATCCATCCCCACTGGGTGAGACATAAAGGATGT
TACTGCAACAATTTGGTACACAATCAATTCTCCCACTGCAATCCAAAGAG
GTCACTCTGTGACCACTATTGACCAAGCTCGTGCTGAACACACAGGTCGA
TGCTGGGTGTGCACTTCCGCGCCGACAATATTGATGGCATGCTCTTTGGT
GAGGTCATCGCCGTCCGTATCCTGCAAGAGGTTAGTAACATATGCACACA
ACCCATAGTACACAACTAAAATGAAAGGATATTGGGGAAAGGTAGTAGCA
CGTGTGACTCACAATATGTTGGAAATGTGCTAGGGAATGTAAGGTGGAAG
GTATATCCACAAGCAATTTTGCTGCTGTTCCACATTATTGTAGTTTCCCT
CGAACATCCTTTCCCCCGCGCACTTAGAGAATATAGAGAGTATCCTTGAA
TATATAGTAGGAACGAGAGTGTCTCTTGGAGGACCTTTTCCATTGAAGCA
CCTATCTCTCAAACACCTTGTCGCATTTGACCTTACCATCAATTGAGCTC
TACAGTATACAGTTAAACCGTTGAACATCACTCGACTTTGTCATTATTCG
GACACATGGTACAACAGGAATTGTCGGGGCTTCCAGAGGGGGAGATGGCT
TTCTGGGAATTTGACCTTTTCAATGGTGACACAATCAAGGTGTGATGAGG
ATGGTTTGGGTATCTCGTGTGCACTAGCGTAGTAGGTTCGACATTTTCTT
GATTCCTGGTCTTGAACTTGGCATACATATGTTGCTATATGTTCAATGTA
TGGTCTTGCTCCCAGAGGCGAAAACGGTTGTCAGAAGCCAATCTCTACTC
GACTTTTGTTTTCTGGTCGGAAACCTGTTTCTTCGAAATGTAATATATAG
TTTTGTCTCGACAGGTAAATTGCCTGAATTATTGCACCTACTGAGCTGAG
TGTAACATATATGTGGTTTTTCTCCAAGGTGTTGTGTCTCGACTAACCTT
GTACTTGCACTATTGGTCCATCAGTGGACATCCTATTGGATGATCGCTTC
AACGTTCTCAAATATACCATTGTTTCGCGTTGTTTGTTCACCGTTCCTCT
ATTTGCAGATTGAGCGCGAAGGCAACACAATTGGTGGGGTTTTCTTCCCC
GGTCCATATGATCCGGATTTGTTCCCTGAGGAAGAGTGAGTAATGGGGTT
GCTATCCCTGTACAATTTTGCATCACACATGTTGCTGACACCGCCTTCGG
GACTCACTTGCTTGGTTTCCACATGTAGTGTGAGAATCGTCCATTTGCTG
TACAATCTGTCATGGGTTGATTAAGGTGATGGGTTGAATCACTAAAAAGA
AGAAGATTGTCAATAGTAGTTGTTGGCAGAGCAACTCTCGCTATGCATAG
CACTGTCCTTACTAATTTTTCTGGAGATACGTATGCCACGAAGTACCTTA
ATGGTAGCAACTGTGCGTTGAAACTGAGGAGTTTTATGTTTGCAGGAACA
AATGTACTCTAGGGTAGATTGTTTTGAGCTACTTTTTAGAGCTTCTCATA
GTACCTTCTCAAATGCATTGATCTCCTGGTCATCATGTTGCGATTTTTTA
TTTTTCAGCATAGAGACTGGACAGAGCAAACTCTGTAAGAGTTCGCTTCA
CTCACCTTCCAATACTGAGTTGGTTGTTTCCAGTGACTTGACAAAAGTAA
ACCCCACATTCTAATCATACAGGTGCAAAGACAAGGAATGTAAAGATCGG
GAGCTGGAGAGGACAAATCGGTTGTACAACAGGGGATACTACTAAAATTG
CACGGGTTGTGGCTATTACCTGCTGAGGCAGTCCCTATAGTTGCTAATAC
TACGTATTTCTTCAAGGAGGTACATCCAAATTATTGCATCCAAATTCCCC
TTTCCCCCTAAACCCAGGGAATAATGTGTATTTTCCCCCTGAAGTGGGGA
ACTGAGAAACAATTTTAGATTAGACGGTGCACAAGAGGCATTGTCCACAT
GAGCAAGAGTTCTTGAGCCGTCCTGGCTCAAAGTATCTGGGAGGGGGTGG
CGGCTGTCCATTTGGGTCAATTTTTTCATGTCGCGATTTTTGGGTTAT
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Coding sequence (CDS) from alignment at C-tenellus_contig8335:4221..6368+

>mRNA_C-tenellus_contig8335.1.1 ID=mRNA_C-tenellus_contig8335.1.1|Name=mRNA_C-tenellus_contig8335.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=303bp|location=Sequence derived from alignment at C-tenellus_contig8335:4221..6368+ (Choristocarpus tenellus KU2346)
ATGCTGGGTGTGCACTTCCGCGCCGACAATATTGATGGCATGCTCTTTGG
TGAGGTCATCGCCGTCCGTATCCTGCAAGAGGAATTGTCGGGGCTTCCAG
AGGGGGAGATGGCTTTCTGGGAATTTGACCTTTTCAATGGTGACACAATC
AAGATTGAGCGCGAAGGCAACACAATTGGTGGGGTTTTCTTCCCCGGTCC
ATATGATCCGGATTTGTTCCCTGAGGAAGAGTGCAAAGACAAGGAATGTA
AAGATCGGGAGCTGGAGAGGACAAATCGGTTGTACAACAGGGGATACTAC
TAA
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