mRNA_C-tenellus_contig8333.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM) HSP 1 Score: 82.4 bits (202), Expect = 1.660e-16 Identity = 42/113 (37.17%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIW-VRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336 GF++C++D CV +RDG +A +VDDL++A D L+ + + ++F + D G+LEY++G EI DR + VT+ QT+++K + +FGM +K P D L KS Sbjct: 156 GFKKCESDHCVY-LKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKS 267
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H9G1_PHYRM (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9G1_PHYRM) HSP 1 Score: 82.0 bits (201), Expect = 7.190e-16 Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIW-VRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336 GF++C++D CV +RDG +A +VDDL++A D L+ + + ++F + D G+LEY++G EI DR + VT+ QT+++K + +FGM +K P D L K+ Sbjct: 14 GFKKCESDHCVY-LKRDGQDMIFVALYVDDLILASSNDELLESTKHELSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKN 125
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H842_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H842_PHYRM) HSP 1 Score: 81.6 bits (200), Expect = 9.820e-16 Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIW-VRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336 GF++C++D CV +RDG +A +VDDL++A D L+ + + ++F + D G+LEY++G EI DR + VT+ QT+++K + +FGM +K P D L K+ Sbjct: 780 GFKKCESDHCVY-LKRDGQDMIFVALYVDDLILASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKN 891
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM) HSP 1 Score: 81.3 bits (199), Expect = 1.280e-15 Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILI-WVRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336 GF++C++D CV +RDG +A +VDDL++A D L+ + + ++F + D G+LEY++G EI DR + VT+ QT+++K + +FGM +K P D L K+ Sbjct: 454 GFKKCESDHCVY-LKRDGQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKN 565
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: A0A2G8S3F3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S3F3_9APHY) HSP 1 Score: 80.5 bits (197), Expect = 2.560e-15 Identity = 39/104 (37.50%), Postives = 66/104 (63.46%), Query Frame = 1 Query: 4 FEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGK-IDILIWVRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHD 312 + C D V YR DG +I HVDDL +A + +++ V+++++E F I D G++ + +G + RDR+A+T+++SQT YI+ + +RFG++ AK S P D Sbjct: 1189 MKPCDVDQAVF-YRIDGTDLIIIVVHVDDLTIAASCMALVVLVKTKLREAFEISDEGEIHWILGFAVIRDRSARTLSLSQTAYIEAIIRRFGLEEAKPLSTPMD 1291
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H767_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H767_PHYRM) HSP 1 Score: 80.1 bits (196), Expect = 3.210e-15 Identity = 40/113 (35.40%), Postives = 67/113 (59.29%), Query Frame = 1 Query: 1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIW-VRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336 GF++C++D C+ RDG +A +VDDL++A D L+ + + ++F + D G+LEY++G EI DR + VT+ QT+++K + +FGM +K P D L K+ Sbjct: 38 GFKKCESDHCIY-LERDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKN 149
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 3.310e-15 Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 1 Query: 1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIWVRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGM 279 GFEQ +DPCVLR+ + + A HVDD+L AG + + + + ++ G++ +++GCEISRDR A T+ ISQ YI+ V +RF + Sbjct: 43 GFEQSLSDPCVLRFMMGDEVMGIFAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNI 135
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: A0A535EX56_9CHLR (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535EX56_9CHLR) HSP 1 Score: 80.1 bits (196), Expect = 3.480e-15 Identity = 38/113 (33.63%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGK-IDILIWVRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336 GF+Q DPC+ + G++ A+ VDDL+V GK +D + +++ ++ +F ++D G+L+Y++G +++RDR + + +SQ Y + + RFGM +K S P L KS Sbjct: 1027 GFKQSVCDPCIYINNKTGIIIAI---WVDDLIVLGKDLDSINKIKAELRNEFEMKDLGELKYFLGMQVTRDRVQRRLHLSQEGYTREILNRFGMQDSKPVSTPIATGTALQKS 1136
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM) HSP 1 Score: 79.0 bits (193), Expect = 3.580e-15 Identity = 40/113 (35.40%), Postives = 67/113 (59.29%), Query Frame = 1 Query: 1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIW-VRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336 GF++C++D CV +RDG +A +VDDL++A D L+ + + ++F + D G+LEY++G EI D + VT+ QT+++K + +FGM +K P D L K+ Sbjct: 195 GFKKCESDHCVY-LKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKN 306
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H925_PHYRM (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H925_PHYRM) HSP 1 Score: 79.3 bits (194), Expect = 6.190e-15 Identity = 40/113 (35.40%), Postives = 67/113 (59.29%), Query Frame = 1 Query: 1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIW-VRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336 GF++C++D CV +RDG +A +VDDL++A D L+ + + ++F + D G+LEY++G EI D + VT+ QT+++K + +FGM +K P D L K+ Sbjct: 375 GFKKCESDHCVY-LKRDGQDMIFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKN 486 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig8333.1.1 >prot_C-tenellus_contig8333.1.1 ID=prot_C-tenellus_contig8333.1.1|Name=mRNA_C-tenellus_contig8333.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=113bp GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIWVRSRIKEQback to top mRNA from alignment at C-tenellus_contig8333:4117..4455- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig8333.1.1 ID=mRNA_C-tenellus_contig8333.1.1|Name=mRNA_C-tenellus_contig8333.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=339bp|location=Sequence derived from alignment at C-tenellus_contig8333:4117..4455- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig8333:4117..4455- >mRNA_C-tenellus_contig8333.1.1 ID=mRNA_C-tenellus_contig8333.1.1|Name=mRNA_C-tenellus_contig8333.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=339bp|location=Sequence derived from alignment at C-tenellus_contig8333:4117..4455- (Choristocarpus tenellus KU2346)back to top |