mRNA_C-tenellus_contig8333.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8333.1.1
Unique NamemRNA_C-tenellus_contig8333.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 82.4 bits (202), Expect = 1.660e-16
Identity = 42/113 (37.17%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIW-VRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336
            GF++C++D CV   +RDG     +A +VDDL++A   D L+   +  + ++F + D G+LEY++G EI  DR +  VT+ QT+++K +  +FGM  +K    P D    L KS
Sbjct:  156 GFKKCESDHCVY-LKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKS 267          
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H9G1_PHYRM (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9G1_PHYRM)

HSP 1 Score: 82.0 bits (201), Expect = 7.190e-16
Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIW-VRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336
            GF++C++D CV   +RDG     +A +VDDL++A   D L+   +  + ++F + D G+LEY++G EI  DR +  VT+ QT+++K +  +FGM  +K    P D    L K+
Sbjct:   14 GFKKCESDHCVY-LKRDGQDMIFVALYVDDLILASSNDELLESTKHELSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKN 125          
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H842_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H842_PHYRM)

HSP 1 Score: 81.6 bits (200), Expect = 9.820e-16
Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIW-VRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336
            GF++C++D CV   +RDG     +A +VDDL++A   D L+   +  + ++F + D G+LEY++G EI  DR +  VT+ QT+++K +  +FGM  +K    P D    L K+
Sbjct:  780 GFKKCESDHCVY-LKRDGQDMIFVALYVDDLILASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKN 891          
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM)

HSP 1 Score: 81.3 bits (199), Expect = 1.280e-15
Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILI-WVRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336
            GF++C++D CV   +RDG     +A +VDDL++A   D L+   +  + ++F + D G+LEY++G EI  DR +  VT+ QT+++K +  +FGM  +K    P D    L K+
Sbjct:  454 GFKKCESDHCVY-LKRDGQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKN 565          
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: A0A2G8S3F3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S3F3_9APHY)

HSP 1 Score: 80.5 bits (197), Expect = 2.560e-15
Identity = 39/104 (37.50%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    4 FEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGK-IDILIWVRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHD 312
             + C  D  V  YR DG    +I  HVDDL +A   + +++ V+++++E F I D G++ + +G  + RDR+A+T+++SQT YI+ + +RFG++ AK  S P D
Sbjct: 1189 MKPCDVDQAVF-YRIDGTDLIIIVVHVDDLTIAASCMALVVLVKTKLREAFEISDEGEIHWILGFAVIRDRSARTLSLSQTAYIEAIIRRFGLEEAKPLSTPMD 1291          
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H767_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H767_PHYRM)

HSP 1 Score: 80.1 bits (196), Expect = 3.210e-15
Identity = 40/113 (35.40%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIW-VRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336
            GF++C++D C+    RDG     +A +VDDL++A   D L+   +  + ++F + D G+LEY++G EI  DR +  VT+ QT+++K +  +FGM  +K    P D    L K+
Sbjct:   38 GFKKCESDHCIY-LERDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKN 149          
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 3.310e-15
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 1
Query:    1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIWVRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGM 279
            GFEQ  +DPCVLR+     +  + A HVDD+L AG   +   +   + +    ++ G++ +++GCEISRDR A T+ ISQ  YI+ V +RF +
Sbjct:   43 GFEQSLSDPCVLRFMMGDEVMGIFAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNI 135          
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: A0A535EX56_9CHLR (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535EX56_9CHLR)

HSP 1 Score: 80.1 bits (196), Expect = 3.480e-15
Identity = 38/113 (33.63%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGK-IDILIWVRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336
            GF+Q   DPC+    + G++ A+    VDDL+V GK +D +  +++ ++ +F ++D G+L+Y++G +++RDR  + + +SQ  Y + +  RFGM  +K  S P      L KS
Sbjct: 1027 GFKQSVCDPCIYINNKTGIIIAI---WVDDLIVLGKDLDSINKIKAELRNEFEMKDLGELKYFLGMQVTRDRVQRRLHLSQEGYTREILNRFGMQDSKPVSTPIATGTALQKS 1136          
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 79.0 bits (193), Expect = 3.580e-15
Identity = 40/113 (35.40%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIW-VRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336
            GF++C++D CV   +RDG     +A +VDDL++A   D L+   +  + ++F + D G+LEY++G EI  D  +  VT+ QT+++K +  +FGM  +K    P D    L K+
Sbjct:  195 GFKKCESDHCVY-LKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKN 306          
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Match: H3H925_PHYRM (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H925_PHYRM)

HSP 1 Score: 79.3 bits (194), Expect = 6.190e-15
Identity = 40/113 (35.40%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    1 GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIW-VRSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRSVPHDLSRTLDKS 336
            GF++C++D CV   +RDG     +A +VDDL++A   D L+   +  + ++F + D G+LEY++G EI  D  +  VT+ QT+++K +  +FGM  +K    P D    L K+
Sbjct:  375 GFKKCESDHCVY-LKRDGQDMIFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKN 486          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8333.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3H934_PHYRM1.660e-1637.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H9G1_PHYRM7.190e-1636.28Integrase catalytic domain-containing protein n=4 ... [more]
H3H842_PHYRM9.820e-1636.28Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H9Y1_PHYRM1.280e-1536.28CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
A0A2G8S3F3_9APHY2.560e-1537.50Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
H3H767_PHYRM3.210e-1535.40Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6H5JRE7_9PHAE3.310e-1539.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A535EX56_9CHLR3.480e-1533.63DDE-type integrase/transposase/recombinase (Fragme... [more]
H3H8P6_PHYRM3.580e-1535.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H925_PHYRM6.190e-1535.40Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8333contigC-tenellus_contig8333:4117..4455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra87462
Model size339
Max annot lvl164328.Phyra87462|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.58e-16
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size339
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790099.0671506-CDS-C-tenellus_contig8333:4116..44551680790099.0671506-CDS-C-tenellus_contig8333:4116..4455Choristocarpus tenellus KU2346CDSC-tenellus_contig8333 4117..4455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8333.1.1prot_C-tenellus_contig8333.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8333 4117..4455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8333.1.1

>prot_C-tenellus_contig8333.1.1 ID=prot_C-tenellus_contig8333.1.1|Name=mRNA_C-tenellus_contig8333.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=113bp
GFEQCKADPCVLRYRRDGVLCAVIAPHVDDLLVAGKIDILIWVRSRIKEQ
FSIEDFGDLEYYMGCEISRDRTAQTVTISQTRYIKIVCQRFGMDGAKKRS
VPHDLSRTLDKSE
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mRNA from alignment at C-tenellus_contig8333:4117..4455-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8333.1.1 ID=mRNA_C-tenellus_contig8333.1.1|Name=mRNA_C-tenellus_contig8333.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=339bp|location=Sequence derived from alignment at C-tenellus_contig8333:4117..4455- (Choristocarpus tenellus KU2346)
GGTTTTGAGCAATGCAAAGCAGACCCTTGTGTGTTACGCTATAGAAGAGA TGGCGTTCTTTGTGCTGTGATCGCCCCCCACGTAGATGATCTATTGGTAG CTGGTAAAATTGATATTTTGATTTGGGTTCGCTCTAGGATCAAAGAGCAG TTTTCCATAGAAGACTTTGGTGATCTTGAGTATTATATGGGTTGTGAGAT TTCACGTGACAGAACTGCACAGACTGTCACCATCAGTCAGACTCGGTACA TTAAGATTGTTTGTCAAAGATTTGGTATGGATGGTGCAAAGAAGAGGTCG GTACCCCATGATCTCTCAAGGACTCTAGACAAGAGTGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig8333:4117..4455-

>mRNA_C-tenellus_contig8333.1.1 ID=mRNA_C-tenellus_contig8333.1.1|Name=mRNA_C-tenellus_contig8333.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=339bp|location=Sequence derived from alignment at C-tenellus_contig8333:4117..4455- (Choristocarpus tenellus KU2346)
GGTTTTGAGCAATGCAAAGCAGACCCTTGTGTGTTACGCTATAGAAGAGA
TGGCGTTCTTTGTGCTGTGATCGCCCCCCACGTAGATGATCTATTGGTAG
CTGGTAAAATTGATATTTTGATTTGGGTTCGCTCTAGGATCAAAGAGCAG
TTTTCCATAGAAGACTTTGGTGATCTTGAGTATTATATGGGTTGTGAGAT
TTCACGTGACAGAACTGCACAGACTGTCACCATCAGTCAGACTCGGTACA
TTAAGATTGTTTGTCAAAGATTTGGTATGGATGGTGCAAAGAAGAGGTCG
GTACCCCATGATCTCTCAAGGACTCTAGACAAGAGTGAG
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