mRNA_C-tenellus_contig8332.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8332.2.2
Unique NamemRNA_C-tenellus_contig8332.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8332.2.2 vs. uniprot
Match: D7G8Y0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y0_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 3.310e-19
Identity = 94/260 (36.15%), Postives = 113/260 (43.46%), Query Frame = 3 
Query:  141 MRRTPARPGGQGKKPSGSSFKITYSVSQLLTMGKAEQXXXXXXXXXXXXXXXXXXXXXQXDDGGKGGGEEEKSDVLEGWQKFGYSNISPLLPEDGSHAPPAHKLKEAMQNLKLRPGSARDFHADYLAALAEAGPGNGDLAAQAQRGTRSTLALTGGARGGLDRCVGRGDRDRGVQGRYDXXXXXXHA-------ENDRVGG------------------------------GRGGAGAPSRGPSRWDALRPDRERDRGYN 809
            MRR P R G  GKK SG+ FKITYSV+QLL+MGK                                   E      EGW K+ Y  I PL+ E+ +  P     KE    LK++PGSARD H++++AAL             A++G     + + G RGG D    R DRDRG      XXXXXX         + DR G                               G GGAG   R PSRWDAL+PDRERDRGYN
Sbjct:    2 MRRPPTRAGLGGKKASGTGFKITYSVNQLLSMGKELME------------------------------SEAGCPPPEGWDKYEYDTIGPLIDENNTRIP----SKEEAAALKMKPGSARDLHSEHIAALV------------AKQGADPDQSPSLGPRGGGD----RPDRDRGXXXXXXXXXXXXXXXWGDRDRDWDRFGDRNKXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGGAGG-GRAPSRWDALKPDRERDRGYN 210
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8332.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Y0_ECTSI3.310e-1936.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8332contigC-tenellus_contig8332:1928..5827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size947
Hectar predicted targeting categoryother localisation
Exons4
Cds size807
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790098.7745466-UTR-C-tenellus_contig8332:1927..20671680790098.7745466-UTR-C-tenellus_contig8332:1927..2067Choristocarpus tenellus KU2346UTRC-tenellus_contig8332 1928..2067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790098.7891688-CDS-C-tenellus_contig8332:2067..23301680790098.7891688-CDS-C-tenellus_contig8332:2067..2330Choristocarpus tenellus KU2346CDSC-tenellus_contig8332 2068..2330 +
1680790098.7982526-CDS-C-tenellus_contig8332:3890..41211680790098.7982526-CDS-C-tenellus_contig8332:3890..4121Choristocarpus tenellus KU2346CDSC-tenellus_contig8332 3891..4121 +
1680790098.8073587-CDS-C-tenellus_contig8332:5060..51321680790098.8073587-CDS-C-tenellus_contig8332:5060..5132Choristocarpus tenellus KU2346CDSC-tenellus_contig8332 5061..5132 +
1680790098.8228714-CDS-C-tenellus_contig8332:5586..58271680790098.8228714-CDS-C-tenellus_contig8332:5586..5827Choristocarpus tenellus KU2346CDSC-tenellus_contig8332 5587..5827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8332.2.2prot_C-tenellus_contig8332.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8332 2068..5827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8332.2.2

>prot_C-tenellus_contig8332.2.2 ID=prot_C-tenellus_contig8332.2.2|Name=mRNA_C-tenellus_contig8332.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=269bp
MRRTPARPGGQGKKPSGSSFKITYSVSQLLTMGKAEQAERAEKAKKSEKI
ENTENNETQEDDGGKGGGEEEKSDVLEGWQKFGYSNISPLLPEDGSHAPP
AHKLKEAMQNLKLRPGSARDFHADYLAALAEAGPGNGDLAAQAQRGTRST
LALTGGARGGLDRCVGRGDRDRGVQGRYDRGDRDRHAENDRVGGGRGGAG
APSRGPSRWDALRPDRERDRGYNNRTNRERDVDGVGGGNGREGGAGGRHG
GRNGRERGDRGGHEESGGG
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mRNA from alignment at C-tenellus_contig8332:1928..5827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8332.2.2 ID=mRNA_C-tenellus_contig8332.2.2|Name=mRNA_C-tenellus_contig8332.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3900bp|location=Sequence derived from alignment at C-tenellus_contig8332:1928..5827+ (Choristocarpus tenellus KU2346)
AAAACCTTGGGGCATGGATATGTGCTTGGGTACAGCCTGAATAAGACTCA
GGGATAGTACCAGAGTTCTAGGTAGCCTTAGACAAACTAAACAAATAACA
TTTTGTGTATTTGAAGTTGAGGTGAAGCAAGCTTAGCACCATGCGACGCA
CACCTGCCCGCCCTGGGGGGCAAGGAAAGAAGCCCTCAGGGTCTAGTTTC
AAGATCACATACAGCGTGAGTCAACTGCTGACCATGGGCAAGGCTGAACA
GGCAGAGCGAGCGGAGAAGGCAAAGAAGTCTGAAAAGATTGAGAATACAG
AGAACAATGAAACACAGGAGGATGATGGGGGTAAGGGGGGGGGAGAGGAG
GAAAAGAGTGATGTGTTGGAGGGATGGCAGAAATTTGGGTACAGCAATAT
CAGGTGAGAGACTTTGGTGAATGGATATAGAACTGGGCATGGTTATGGTA
AGAATGAGTGACCAATCTTGTGCTCGACGGATGGCAAATCTTTGCTTCCA
TCACCTGATTTTTGGTTTTACAAAGTCATAAGGGTAGCAGTTGAATCTAT
TGTGTTCCACCAAAAGAGCTTGTACTATTTTGTTTTGGAAGGGGAAGGGA
GCCCAAAATGGGGAGTGAGCCATATGTGTTAGATGCTGATGTTGAACATG
TTGTGAGGAGTATTGTTACAAATGTCCTTGTTGTGCTGTACATTTTTTTT
GGTATGCTGTCCATGGGTCGTTGGGATAATCATTGCATGGCCTTGTCCTT
TGATTATATCCCACCATTATAGGGAGATATTATTGTTGGTCCTTCCTCAC
AAGAAACTGGTGACATTTGAGATTCTTTGAAGCCATCTCTTGTCTGCTCT
GCCCATGAAAGACTGAAGAGAGGTTTGGTGGTAACTGAGGGAACATCTCT
TGAATGCAATCTGTGCTTATTCCATCACATAATTAGTTTCACGTCTATAA
CCCTGTTCTGAGTCATTGGCCCTTTCACCACTTGGGTGTCATTTTGGTGT
GGTCTTGACACAGAGCTTAAGTCTCCTAGACGTAATATGTAGGTTATGTT
AGCCATTATCACTCTTTCAACTATTATCTTCTCATGAGGCTATGTTACTG
CCAGGATTATCTTTTAATTCCTTCATAGTGAGCCAGTAACTCTGCAACTA
TCTTCTTAGAGTGAGGGAGTCTGCCTATGCAGTTTCATCATACTAAGAGT
TTCTAGAGTTCTTGACCCCTGTTGCCCACAGCACAAGCAATGGGCCTTGT
GTACTCACATGTACCAAGAAAGTAGATGTTGCAAGCTCCTCCTGAATACA
GCTCTGCTGTGACAGGTTCTGTTTCAGTGTATTTGGACTTGAAGTCACTT
TAAGGCAGTTCCCCTCTCGTGTAGAACTGAGTAAAAGGCAAGGATGTCAT
AGTACCCTTTGAGGGCTGGTGGTTAATTTTGTTGTGTCCACTGCTGTGTC
TACCTAACCAGGGTATTAAGTCTTGCCTTGCCTGATTTTGCTCAGCTGGA
CAACATTGCTGTCAAATAGTCTGGTGACAATGTCATGAGTGTATCATGGT
TTGACTTAGTGTGGTAGGTGATTTCATGCATATTTCCGCACCTTCTCACC
CTTGAGTGTTTTTTCATGGTGGCCATCCCCAATTGTTTTTGCTTGATTTT
CTGGAGACTGCCAGTCCAAATCCGAGCCCCAATGTTTAGTGTTCGGTACC
TGAATTCAATTTAATGCGTGATAACACCAGTTGTATATTTTCCATCTCTT
TTATGTCATGGTATGCAGAAAATAGGTGATTGTGGTAGGGAAAGAGTGCG
TCCTCCTCTGCTTATCTTGAGCATGAGGCCCCATTGTTGTGTCTTCCTTA
CCCCTTTACATCCTATTGGTCTTAGCCCTATTCACATGATAGCCCAATCT
CCATTCTTCTCCAATAATTTACCTCACCTTGATCCTTTCCCATCCCTTTT
GTGGTCTCTACAGTCCATTACTACCTGAGGATGGATCCCACGCCCCACCT
GCACACAAGCTGAAGGAGGCCATGCAGAACCTCAAGCTTAGGCCAGGGTC
GGCTCGAGATTTCCATGCAGACTACCTTGCTGCCCTAGCGGAGGCTGGAC
CGGGGAATGGGGACCTGGCAGCACAGGCACAGAGGGGAACACGCAGCACA
CTTGCACTTACTGGGGGGGCAAGAGGAGGCTTGGACAGGTGTGTGTGTGT
GTGTGTGTGTGTGCAAGGAGGAAGGCGTTGGGAAAAAGGTTGAAGGAGGT
GCTGAACAATGATATTAGTTGTTTTACAAGGGTTACTGGTGAATGAGGGT
CTGGGAGGTTTGAGGTCAAGGTTAGACCAGAGATGAGAGCACTTCCTCCT
CTCTTCCCCCTCTTAATCCAGTTTCAATGCTCTTAATCCAATTTCAATGC
CCACAGCCCCCCGCTTTCTGGGTATCATGCACATGATAATTCAAATATGC
AACACAAACAAGGAGGAGGGGAGGTGATGTGGGATAAGATACTCGGAGGG
TTACTGTGATATTTTACATGAGTGTTGTATTGTGACTGCATTCTGCATTT
CTTTTTAAGGTTTGTTGATTTGATTGCTCTCTTGTGCTGACTATTGTACA
CAGAGCTTGTATTTCTGAGAGCATGGCCTTATTCTGTTCTTTGTTTTCTT
TTTAACCTTTTTCTTGTCTGCTTCCCTGAGGTGGACATGAAAGATGAAGT
ACATGTTCCTGGATTTGATGATACCTGATCGTTTTCCTGTCTTTTTCTAG
TCTTTAGACCTGCTTGTATCCCACTCCGCTAATCTTGTTCAAAATATATC
ATGCCCCCACCCTTGGGGGGTTGCACTTTGATGATGCCATAGGGATGAGT
TTAATAAGAGAGTTGTAATATGATGTAAGTTCGTGAGATGCACCTGATCC
TCACAAAGATCAAGTTAGAATCATTCTGTTAACTGCATCAGAACTAGACC
TGTACGGTGATCATTTTGTTGGTACATGGGATAGGGTGGCTTGAAGGAGT
AGTAGAGCATGTTGCCCTACATACCTTAACCAGGCGCCCTTGCCTCATTG
GACCTTCCCCACCTCTGAGTCACCACCTAGACACATCTTGTCATTGTATC
TCAATACCTTGTCTTTTTTTCTTTATCTTTCAGGGGAAGGGGTGATAGAG
ATAGGGGTGTGCAAGGACGTTATGACAGAGGGGACAGAGATCGACATGCT
GAGAAGTGAGTGAACTCAAGCCGACTGTGGGGAGCAAGAATTTTAGGTTA
AGCATATGGAAAAAAATAGTTGGAATATGGGTGTCTTTCTACCATGCCGC
TTCAGTCACAGAAATCCCACCACCTCATACTAACTTACCTCTCATGATAA
TGACACTTTAATAACTCACATAATTTACTGCTCCTTGCACCTCATGTTAA
ATCTTATCTCTTCCTACTCATATTCAGAGTACATTGTATTTATTCTAGTA
CTGGAAAGCATTGCTGTATGTTGATGCCTCACTCCCCAATCAACCCTCTT
GTTCAACTAATATCAACTGCTACGAGCCTTACCGAAGGTGGCCACAAGTT
TCCTAGGTCTAGCTATGCCATTTTGTGATATTTTGCTCACTTCCCAGTCC
ATTTAATATTTTTCCTGTCATGCATTATTTATTTCACATTATGTATCATA
TCATTGCAGTGACAGGGTAGGGGGGGGAAGGGGAGGAGCTGGGGCCCCGT
CGAGGGGTCCATCACGCTGGGATGCGCTCCGACCTGACAGGGAGAGGGAC
CGAGGCTACAATAATCGTACCAATAGGGAACGGGATGTGGATGGTGTTGG
GGGGGGGAATGGGAGGGAAGGGGGTGCAGGTGGACGGCATGGGGGCAGAA
ATGGAAGGGAGAGGGGAGACAGGGGTGGGCATGAGGAGAGTGGTGGGGGC
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Coding sequence (CDS) from alignment at C-tenellus_contig8332:1928..5827+

>mRNA_C-tenellus_contig8332.2.2 ID=mRNA_C-tenellus_contig8332.2.2|Name=mRNA_C-tenellus_contig8332.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=807bp|location=Sequence derived from alignment at C-tenellus_contig8332:1928..5827+ (Choristocarpus tenellus KU2346)
ATGCGACGCACACCTGCCCGCCCTGGGGGGCAAGGAAAGAAGCCCTCAGG
GTCTAGTTTCAAGATCACATACAGCGTGAGTCAACTGCTGACCATGGGCA
AGGCTGAACAGGCAGAGCGAGCGGAGAAGGCAAAGAAGTCTGAAAAGATT
GAGAATACAGAGAACAATGAAACACAGGAGGATGATGGGGGTAAGGGGGG
GGGAGAGGAGGAAAAGAGTGATGTGTTGGAGGGATGGCAGAAATTTGGGT
ACAGCAATATCAGTCCATTACTACCTGAGGATGGATCCCACGCCCCACCT
GCACACAAGCTGAAGGAGGCCATGCAGAACCTCAAGCTTAGGCCAGGGTC
GGCTCGAGATTTCCATGCAGACTACCTTGCTGCCCTAGCGGAGGCTGGAC
CGGGGAATGGGGACCTGGCAGCACAGGCACAGAGGGGAACACGCAGCACA
CTTGCACTTACTGGGGGGGCAAGAGGAGGCTTGGACAGGTGTGTGGGAAG
GGGTGATAGAGATAGGGGTGTGCAAGGACGTTATGACAGAGGGGACAGAG
ATCGACATGCTGAGAATGACAGGGTAGGGGGGGGAAGGGGAGGAGCTGGG
GCCCCGTCGAGGGGTCCATCACGCTGGGATGCGCTCCGACCTGACAGGGA
GAGGGACCGAGGCTACAATAATCGTACCAATAGGGAACGGGATGTGGATG
GTGTTGGGGGGGGGAATGGGAGGGAAGGGGGTGCAGGTGGACGGCATGGG
GGCAGAAATGGAAGGGAGAGGGGAGACAGGGGTGGGCATGAGGAGAGTGG
TGGGGGC
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