mRNA_C-tenellus_contig8329.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8329.1.1
Unique NamemRNA_C-tenellus_contig8329.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8329.1.1 vs. uniprot
Match: D8LE47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE47_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.060e-32
Identity = 73/140 (52.14%), Postives = 95/140 (67.86%), Query Frame = 1 
Query:    1 MNRLVKHGAEALKPRR--NGVKWFPPQVSQRKAKVLRKQAIRDGTFGTIEPSALTAGEIVGWDPQWDHHPPRAPSVGRPPKLHKNQRNRAERAEKITVKLAEQPKRMEELKKARNAGK-QYEEGIMGLIKRLNNQGKKRR 411
            MNRLV+ GAEALKP+R     KW  P+VS+RKA VLRK+AIRDG+FG++   A T   I GWDP WD     AP   RPPKLHKNQR+RA+RAEKIT KL EQ  R+++L + +   K + E+G + L++ L   G  ++
Sbjct:    1 MNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSVVMDADTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRAEKITAKLGEQEARLKDLNRVKAVPKPKPEDGTLALLRWLKTSGAAKK 140
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BLAST of mRNA_C-tenellus_contig8329.1.1 vs. uniprot
Match: A0A6H5JCG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG4_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 6.640e-31
Identity = 73/140 (52.14%), Postives = 95/140 (67.86%), Query Frame = 1 
Query:    1 MNRLVKHGAEALKPRR--NGVKWFPPQVSQRKAKVLRKQAIRDGTFGTIEPSALTAGEIVGWDPQWDHHPPRAPSVGRPPKLHKNQRNRAERAEKITVKLAEQPKRMEELKKARNAGK-QYEEGIMGLIKRLNNQGKKRR 411
            MNRLV+ GAEALKP+R     KW  P+VS+RKA VLRK+AIRDG+FG+I     T   I GWDP WD     AP   RPPKLHKNQR+RA+RA+KIT KL EQ  R+++L + +   K + E+G + L++ L N G  ++
Sbjct:   68 MNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSIVIDEDTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRADKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLKNSGAAKK 207
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BLAST of mRNA_C-tenellus_contig8329.1.1 vs. uniprot
Match: A0A7S4A6G0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6G0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.940e-17
Identity = 60/140 (42.86%), Postives = 79/140 (56.43%), Query Frame = 1 
Query:    1 MNRLVKHGAEALKPRRNGVK------WFPPQVSQRKAKVLRKQAIRDGTFGTIEPSALTAGEIVGWDPQWDHHPPRAPSVGRPPKLHKNQRNRAERAEKITVKLAEQPKRMEELKKARNAGKQYEEGIMGLIKRLNNQGK 402
            + +L +HGA ALKPR+          W  P VS+R+A V RKQA+RDGTFGT +P+        GW  +WD  P RAP V  PPK HK  R RAER   +  +L + P+ +EE +K   A K    G+  L+KRL  + K
Sbjct:    6 IKKLAQHGAAALKPRKVPTAPGQVNPWRRPLVSRREAAVARKQALRDGTFGTFDPAK------GGWLREWD--PVRAPRVLIPPKGHKRDRTRAERFRNVEARLRDMPRLIEEHRKTVQARKPPP-GVETLLKRLVRRRK 136
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BLAST of mRNA_C-tenellus_contig8329.1.1 vs. uniprot
Match: A0A7S4KCW7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCW7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.010e-15
Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 1 
Query:   10 LVKHGAEALKPRRNGVKWFPPQVSQRKAKVLRKQAIRDGTFGTIEPSALTAGEIVGWDPQWDHHPPRAPSVGRPPKLHKNQRNRAERAEKITVKLAEQPKRMEELKKARNAGKQYEEGIMGLIKRLNNQGKKRR 411
            L++HG +AL+P+    KW  P +S RKA V+RK AI+DGT+G+ +P         GW+P WD   PR  +  R PK  K +R R  RA KI   L +   R+E  +  + A K  E G++ LIK++N   ++++
Sbjct:   19 LIRHGEQALRPQFVNEKWRRPLISMRKAAVIRKGAIKDGTYGSFDPE-----NGKGWNPMWDT--PRKITSLRLPKETKRERTREARASKIESLLEQADDRIETYRLEKEALKP-EPGVLNLIKKMNKGTRRKK 144
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BLAST of mRNA_C-tenellus_contig8329.1.1 vs. uniprot
Match: A0A7S0AE13_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AE13_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.410e-14
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 1 
Query:   10 LVKHGAEALKPRRNGVKWFPPQVSQRKAKVLRKQAIRDGTFGTIEPSALTAGEIVGWDPQWDHHPPRAPSVGRPPKLHKNQRNRAERAEKITVKLAEQPKRMEELKKARNAGKQYEEGIMGLIKRL 387
            L +HG EA KP+     W  P VS R+A VLRK A+RDGT+G  +P         GWDP WD  P +  S+ RPPK  K +R R  RA++I   L +  +++E  +KA+   K+ E GI  L KR+
Sbjct:   36 LKRHGEEAFKPQFVKESWRKPAVSGREAAVLRKAAVRDGTYGAFDPQTGR-----GWDPLWDK-PGKVSSI-RPPKETKRERTRESRAQRIEQLLEQADEKIESYRKAQ-LEKKPEPGIENLFKRM 153
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BLAST of mRNA_C-tenellus_contig8329.1.1 vs. uniprot
Match: A0A7S1BP69_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BP69_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.600e-12
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 1 
Query:    1 MNRLVKHGAEALKPRRNGVKWFPPQVSQRKAKVLRKQAIRDGTFGTIEPSALTAGEIVGWDPQWDHHPPR--APSVGRPPKLHKNQRNRAERAEKITVKLAEQPKRMEELKKARNAGKQYEEGIMGLIKRLNNQ 396
            + +LV+ G  AL+P+    +W  PQ+S R A  +RK++I  GT+GT +P   T G   GWDP WD  P R    S  RPPKLHKN R+R  RA  I   +    +R+++ +K +   K+  + I  L KRL  +
Sbjct:   12 IRKLVQFGEAALRPQLVNGRWRKPQISPRYAARIRKESIACGTYGTFDP---TTGS--GWDPAWDS-PGRIGTTSALRPPKLHKNYRDRENRATNIESLMEGMDERIDQFRKEKQ-DKKPSKSIDNLYKRLTRR 138
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BLAST of mRNA_C-tenellus_contig8329.1.1 vs. uniprot
Match: A0A7R9ZNN0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZNN0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.650e-9
Identity = 54/128 (42.19%), Postives = 68/128 (53.12%), Query Frame = 1 
Query:    1 MNRLVKHGAEALKPRR-------NGVK------WFPPQVSQRKAKVLRKQAIRDGTFGTIEPSALTAGEIVGWDPQWDHHPPRAPS------VGR--PPKLHKNQRNRAERAEKITVKLAEQPKRMEE 321
            +  L + GAEALKP++       NG        W  P VS+R  KVLRKQA+RDGT+GT +   +T G  VGWDP WD  P   P+       GR  P K    +R R ERA+KI   L  +  +MEE
Sbjct:    5 LRHLCQKGAEALKPQKVLSKAAENGFTYKETHVWRRPVVSKRVGKVLRKQALRDGTYGTFD---VTTG--VGWDPLWD--PVLMPNQFKVSRYGRMQPKKKTSRERTREERAQKIEKNLETRLDKMEE 125
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BLAST of mRNA_C-tenellus_contig8329.1.1 vs. uniprot
Match: A0A7S3PQX0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQX0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.580e-6
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:   28 EALKPRRNGVKWFPPQVSQRKAKVLRKQAIRDGTFGTIEPSALTAGEIVGWDPQWDHHPPRAPSVGRPPKLHKNQRNRAERAEKITVKLAEQPKRMEELKKARNAGKQYEEGIMGLIK 381
            +A+KP++   +W  PQ+S+RK  +L+K+A     + + +       +   WDP+W+      P+V RPPK  K++R RAE+  KI   LAE   ++ E KK RN   + E  IM +++
Sbjct:   16 KAMKPQKVNGRWQSPQLSRRKIAILKKKA-----YASDKVRINADWKRGEWDPRWEQFG--IPTVMRPPKGKKHERQRAEKMAKIQEALAEADDKINENKK-RNKKTEREPYIMRVLR 125
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8329.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LE47_ECTSI5.060e-3252.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCG4_9PHAE6.640e-3152.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4A6G0_9STRA4.940e-1742.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4KCW7_9STRA9.010e-1538.06Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0AE13_9STRA3.410e-1442.06Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1BP69_9STRA1.600e-1238.81Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7R9ZNN0_9STRA1.650e-942.19Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3PQX0_9STRA9.580e-633.90Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8329contigC-tenellus_contig8329:1582..4053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LE47
Model size1495
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.63e-36
EggNOG OGs2EAW9@1|root,2SH2Q@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004100.1
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790098.4586105-CDS-C-tenellus_contig8329:1581..17191680790098.4586105-CDS-C-tenellus_contig8329:1581..1719Choristocarpus tenellus KU2346CDSC-tenellus_contig8329 1582..1719 +
1680790098.4783146-CDS-C-tenellus_contig8329:2038..21791680790098.4783146-CDS-C-tenellus_contig8329:2038..2179Choristocarpus tenellus KU2346CDSC-tenellus_contig8329 2039..2179 +
1680790098.489444-CDS-C-tenellus_contig8329:2837..29721680790098.489444-CDS-C-tenellus_contig8329:2837..2972Choristocarpus tenellus KU2346CDSC-tenellus_contig8329 2838..2972 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790098.5031567-UTR-C-tenellus_contig8329:2972..40531680790098.5031567-UTR-C-tenellus_contig8329:2972..4053Choristocarpus tenellus KU2346UTRC-tenellus_contig8329 2973..4053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8329.1.1prot_C-tenellus_contig8329.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8329 1582..2972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8329.1.1

>prot_C-tenellus_contig8329.1.1 ID=prot_C-tenellus_contig8329.1.1|Name=mRNA_C-tenellus_contig8329.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=138bp
MNRLVKHGAEALKPRRNGVKWFPPQVSQRKAKVLRKQAIRDGTFGTIEPS
ALTAGEIVGWDPQWDHHPPRAPSVGRPPKLHKNQRNRAERAEKITVKLAE
QPKRMEELKKARNAGKQYEEGIMGLIKRLNNQGKKRR*
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mRNA from alignment at C-tenellus_contig8329:1582..4053+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8329.1.1 ID=mRNA_C-tenellus_contig8329.1.1|Name=mRNA_C-tenellus_contig8329.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2472bp|location=Sequence derived from alignment at C-tenellus_contig8329:1582..4053+ (Choristocarpus tenellus KU2346)
ATGAATCGTCTTGTCAAGCACGGCGCCGAGGCCCTCAAACCTCGGCGGAA
TGGAGTGAAGTGGTTTCCTCCACAGGTATCACAGCGCAAGGCCAAAGTCC
TCCGAAAACAGGCAATCCGAGATGGTACCTTTGGTACCGTCACTAATTGT
GAAGGTATAAAGCTGTCGACCACTGCAGTGAATCCCCAGAAAATTTGTGC
ATGTCTATAAATATAGAGGCTAGTTTGTAATATGTGGGAAATGACTTGAG
AGAACGCATCGTTGAGTCAGACCCATGGCTAATATTGAGGGCCTACCAAG
TACGGGGACAGAAATCTCCATCGTGAAGAACAAGGTCTTGTTGTAGATCT
TGGTGCTAATTAAATTGTTGTGAGCTTGCCCGGAGGGAATCTTTCATGGC
AAGGAAGAGTTGGATGTGCCAATCCCTCTATGTACAATCTCAACTTACCA
ACTCGAGATTGAACCTTCTGCTTTGACCGCAGGCGAGATTGTTGGCTGGG
ATCCTCAATGGGACCACCACCCACCGCGTGCTCCAAGCGTCGGACGTCCT
CCTAAGCTCCATAAAAACCAGAGAAACAGGGCGGAACGAGCGGAGAAGGT
GAGTGGCAGTGTGCAAAGGTGGGCATTGATTACCTGTATCTATCATTCGT
GTCGTTCCTTGGAGAACCAACTCCCTTTGGTGTTGCGAAACAAACACCTT
GGAAGCATGCTGAATGTCGATACAGATAAGACGCCTGTTTCCCTCACCTT
ACCGCATATATCGTGAAACGGAGACCAAACAAGCGTGGAATATCTTTGTC
TACCTTTCCGTTGCGATAACCATGGGGGTACTCCTACATCTAGGTATCAG
AGCAGTATGAGCAATGCAAGGAGCATTTCTTAGCCGTTAGATGTGTAAAT
GGATGTGTAAAGCTTAGTATCGCGTCAAATGCAAGTGCAAGTGACCCCTA
CATTTTACTATACCCCACGTAAACAAGAGCCCTTTCAATATTGAATCGTG
TTTTTAATTCACAACATCATGCAATTATCCTCTCGTGCCACCTCTAAGGT
GTGTTTCTCTCCTTCTTTCGCTTGTGTTCCTGGTATACCCACTGTCTCCT
CTCCCACCGGCTGCCAAGTAGGCTTTCAAATTCCCACTGGAGTGAAACGA
TGCCCAATATTTTGTTGTCCGCGTATTTCTTAGTTCAGACCGAAGACGCA
GGGCCCATTACTTCACTTTGTTTTTTTTGTTTTTTTTGTGGCGTTTAAAA
ACTCAGATCACTGTCAAGCTGGCAGAGCAGCCCAAGAGAATGGAGGAGCT
GAAGAAGGCCCGGAATGCCGGTAAACAATATGAGGAAGGCATCATGGGTC
TTATCAAGCGCCTCAACAACCAAGGGAAGAAGAGAAGATGATGAAATGCA
GCCAGGATGGGGATGGACGTTATATCTACTTTAGTAGGATGCATTAAGGT
CGTTGGTCCAATTGAAGTAGGGGATATAGACAAGTCCAAGAGAGGTGAAG
CATAGGTTTGATTGGTAACGGTCTGCATGTCATGGTACTTTTCATGGTAC
TTTTCATGGTACTTCTCATGGTACTTCGATTCCACTTTTAAATGGCGTTT
TGATCACTGTTCCTGCTAAGGTTAAGGTTTACAGTTAGGGTTCATTCAAT
TATGCTATACCAGCATGGTCTATGGCAATGGACAATATGGGTAGAGGTTA
CTGACTGGGGGGGGGGATTCTCAAAGATAACATCTACCTGCCCCCCCCCT
CCCCTTTACCAAAATGATACCCCCTTGGAGCATGTAAGGGTGAAAACCGT
TTCATTTGCTCTGCCCCGCTTTATGTGCTGAAGGAGGGAAGGTAGGTTTC
CTGCTAAGTAAGGGATTGAGCTTGCAGGCATACATGTTACATAGCATCGC
ATGTGTACGGCCAGGTTATGGGAGGCCTATGCGCACTTGGTCAGGCGCGT
CGCTGGTGAAGCTATCATGGCAGTAGCACCGATGATGTGTACATTGAGTC
CAGTAGTTCTCTTGGAGTACTTATGTCGTGGATTGTCTGTGTGTTTGTTT
GTCTGTGCATGTGTGCACACAAATGAAGACCATGTGATATTTACGTATAG
ATGGTGACAAAGGATGTCTTCTAGTATTTCGAAGTATGTGTTCGTTGTTT
GTGTAGTGCTATGTGGAGTGTAAAACATTTTTAGGATGTGGATGTGGATG
AAAGTGAATGTGTTAAGGTAACTATCTTTGTATCTGCCTGACACTGTTGA
TCTGATGTCAGGATTTTTCATCGCATCACTGGGGTTTGATTGTGTAGTAG
CTGATGCCCAATACTGCCTGACTTTCCTATTTTAGTGTATCTCACAGAAC
TTGTGTTAGCACCATAGTGGACAGGTTTTCCTATTCAGTACCATTGCCTA
ATGAAATAAAGAGAAGAGCTGAATAACCTGCAAAAGGAATGCATTATGAG
ATGCTCCATGTCTCTTGGGAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig8329:1582..4053+

>mRNA_C-tenellus_contig8329.1.1 ID=mRNA_C-tenellus_contig8329.1.1|Name=mRNA_C-tenellus_contig8329.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=414bp|location=Sequence derived from alignment at C-tenellus_contig8329:1582..4053+ (Choristocarpus tenellus KU2346)
ATGAATCGTCTTGTCAAGCACGGCGCCGAGGCCCTCAAACCTCGGCGGAA
TGGAGTGAAGTGGTTTCCTCCACAGGTATCACAGCGCAAGGCCAAAGTCC
TCCGAAAACAGGCAATCCGAGATGGTACCTTTGGTACCATTGAACCTTCT
GCTTTGACCGCAGGCGAGATTGTTGGCTGGGATCCTCAATGGGACCACCA
CCCACCGCGTGCTCCAAGCGTCGGACGTCCTCCTAAGCTCCATAAAAACC
AGAGAAACAGGGCGGAACGAGCGGAGAAGATCACTGTCAAGCTGGCAGAG
CAGCCCAAGAGAATGGAGGAGCTGAAGAAGGCCCGGAATGCCGGTAAACA
ATATGAGGAAGGCATCATGGGTCTTATCAAGCGCCTCAACAACCAAGGGA
AGAAGAGAAGATGA
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