mRNA_C-tenellus_contig8327.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8327.3.1
Unique NamemRNA_C-tenellus_contig8327.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig8327.3.1 vs. uniprot
Match: A0A6H5KUZ7_9PHAE (Iwr1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ7_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 4.200e-27
Identity = 128/388 (32.99%), Postives = 181/388 (46.65%), Query Frame = 2 
Query:  311 PAPHRVVIRVKRQRVETPIDSLLVAPAPV-KHIDIGGSSTSRKR--AADASFAEAFVTLSMEDTVLAQSERK-----------CPVANFDNINGQHLRYKRFRTTGVDGTSSVGASILCSMA--PCSEPIIPVTGLEETRYETGPRNGTVQAM--------GERICGEH------LDFLEVRRLKAKGVS----TRAAKVDTVGA----------MTGLSEQGNATNGKPASVSTEFHVIDLVGYRGSDERRCLGDIQAEENRCLEGQDKKPQQQRRPAPVLNPMERLVDEAIFMAFQAKE--NTQALLSAVS----SHVNYRRCLGDGTTALMAAAFQGNLTIVKQLLDLHASPGMLDANGRGAADFALGRGHLECAAAIHKAAAEE 1324
            PAPH VV+RVKR+R +  ++SLLVA     + I+      +RKR  A   S AE    LS++ T  +Q +++            P     +   + L YKR RTT  DG+   G      +A  P +     + G EE         G + A+            C          D+LEVRR+KA+ V        A VD+ G            +GL+ +G AT     +     HVIDL    G  +   + D     +    G       +R  AP+L P+ER +DEAIF AFQ  +  + + +L+  S    + VNYRR LGD +TALMAAAF G+L  V+ LL + A   ++DA+GR AA FA  RGH EC A + + A +E
Sbjct:   30 PAPHLVVLRVKRKRGDAAVESLLVATTDEGERIEEQEMMPNRKRRAAGTISIAETMAVLSLDKTAESQRQQQHSPXXXXXXXXXPAVKMQSP--RRLVYKRVRTTEPDGSRDRGEEGRSPVAGAPPARQKRALDGGEEGGXXXXXXXGRLDALLRSKGLNTNSASCSPPPPTAAVFDYLEVRRVKARAVGIVPKNSPAPVDSSGRGGHKQHPSPQSSGLAPEGAAT-----AAPANLHVIDLHAV-GQADASAMMDTLVMGDAGAAGGAHVATAKRAAAPILTPVERQMDEAIFTAFQTGDMSSLRDILTTSSYPSPAGVNYRRRLGDASTALMAAAFHGDLGTVRYLLSIGAKATLVDAHGRSAALFAGMRGHRECFAELQRVADQE 409
[Close]
BLAST of mRNA_C-tenellus_contig8327.3.1 vs. uniprot
Match: D7FQE4_ECTSI (Heat shock protein, mitochondrial protein import, putative mitochondrial translocase complex subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQE4_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.860e-18
Identity = 98/291 (33.68%), Postives = 135/291 (46.39%), Query Frame = 2 
Query:  551 QHLRYKRFRTTGVDGTSSVGASILCSMA--PCSEPIIPVTGLEETRYETGPRNGTVQAM--------GERICGEH------LDFLEVRRLKAKGVS----TRAAKVDTVGAMTGLSEQ-------GNATNGKPASVSTEFHVIDLVGYRGSDERRCLGDIQAEENRCLEGQDKKPQQQRRPAPVLNPMERLVDEAIFMAFQAKE--NTQALLSAVS----SHVNYRRCLGDGTTALMAAAFQGNLTIVKQLLDLHASPGMLDANGRGAADFALGRGHLECAAAIHKAAAEE 1324
            + L YKR RTT  DG+   G      +A  P +     + G EE         G + A+            C          D+LEVRR+KA+ V        A  D+ G   G  EQ       G A++G   +     HVIDL    G  +   + D     +    G       +R  AP+L P ER +D+AIF AFQ  +  + + +L+  S    + VNYRR LGD +TALMAAAF G+L  V+ LL + A   ++DA+GR AA FA  RGH EC A + + A +E
Sbjct:    5 RRLVYKRVRTTEPDGSRDRGDEGRPPVAGTPIARQKRALDGGEEGGGXXXXXXGRLDALLRSKGLNTNYASCSPPPPTAAVFDYLEVRRVKARAVGIVRKNSPAPADSSGR--GGHEQDPSPQSSGLASDGAATAAPANLHVIDLHAV-GQADASTMMDTSVMGDAGAAGGAHVSTAKRAAAPILTPAERQMDKAIFTAFQTGDMSSLRDILTTSSYPSPAGVNYRRRLGDASTALMAAAFHGDLGTVRHLLSIGAKATLVDAHGRSAALFAGMRGHRECFAELQRVADQE 292
[Close]
BLAST of mRNA_C-tenellus_contig8327.3.1 vs. uniprot
Match: A0A6G0WEZ0_9STRA (Probable RNA polymerase II nuclear localization protein SLC7A6OS n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WEZ0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.380e-8
Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 2 
Query: 1019 VLNPMERLVDEAIFMAFQAKENTQ--ALLSAVSSHVNYRRCLGDGTTALMAAAFQGNLTIVKQLLDLHASPGML-DANGRGAADFALGRGHLECAAAIHKAAAEEGDGPNKGLKDAGGGGEKGGAGGGFVYDLYCFQPGVTN 1435
            VLNPMER +DEA+++AFQ  + +    + + ++S V ++R   DG T LMAAA    + ++++L  L     +L D NG+ AAD A  +GH+  A A+    A E D      KD             +VYD+Y      TN
Sbjct:  157 VLNPMERSIDEAVWIAFQRNDFSHFFRVKNEIASPVEFQRP-ADGGTILMAAAMNNRVDVIEKLFALKPESVLLRDWNGKTAADIATSQGHVAAATALRACEAMEMD------KD-------------YVYDVYSIDMTATN 278
[Close]
BLAST of mRNA_C-tenellus_contig8327.3.1 vs. uniprot
Match: A0A3R6WKN3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WKN3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.570e-7
Identity = 53/150 (35.33%), Postives = 76/150 (50.67%), Query Frame = 2 
Query:  992 PQQQRRPAPVLNPMERLVDEAIFMAFQAKENTQ--ALLSAVSSHVNYRRCLGDGTTALMAAAFQGNLTIVKQLLDLHASPGML-DANGRGAADFALGRGHLECAAAIHKAAAEEGDGPNKGLKDAGGGGEKGGAGGGFVYDLYCFQPGVT 1432
            P Q R    VLNPMER +DEAI++AFQ  + +    +   +   + ++R   DG T LMAAA    + +++QLL L++S  +L D +G+ AAD A  +GH   A A+    A E D      KD             +VYD+Y    G T
Sbjct:  151 PLQARATKRVLNPMERNIDEAIWIAFQRNDFSVFFQVRHQIPRALEFQRP-ADGGTILMAAAMHNRVDVIEQLLALNSSCVLLRDWHGKTAADIATDQGHSAAAVALRACEAVETD------KD-------------YVYDVYSIDLGAT 280
[Close]
BLAST of mRNA_C-tenellus_contig8327.3.1 vs. uniprot
Match: W4G2U8_9STRA (Probable RNA polymerase II nuclear localization protein SLC7A6OS n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G2U8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.850e-7
Identity = 53/152 (34.87%), Postives = 77/152 (50.66%), Query Frame = 2 
Query:  992 PQQQRRPAPVLNPMERLVDEAIFMAFQAKENTQ--ALLSAVSSHVNYRRCLGDGTTALMAAAFQGNLTIVKQLLDLHASPGML-DANGRGAADFALGRGHLECAAAIHKAAAEEGDGPNKGLKDAGGGGEKGGAGGGFVYDLYCFQPGVTNT 1438
            P Q R    VLNPMER +DEAI++AFQ  + +    +   +   + ++R   DG T LMAAA    + +++QLL L++S  +L D +G+ AAD A  +GH   A A+    A E D      KD             +VYD+Y    G T +
Sbjct:  153 PLQARATKRVLNPMERNIDEAIWIAFQRNDFSVFFQVRHQIPRALEFQRP-ADGGTILMAAAMHNRVDVIEQLLALNSSCVVLRDWHGKTAADIATDQGHSAAAVALRACEAVETD------KD-------------YVYDVYSIDLGATQS 284
[Close]
BLAST of mRNA_C-tenellus_contig8327.3.1 vs. uniprot
Match: A0A024UFZ1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UFZ1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.530e-5
Identity = 47/138 (34.06%), Postives = 71/138 (51.45%), Query Frame = 2 
Query: 1019 VLNPMERLVDEAIFMAFQAKENTQ--ALLSAVSSHVNYRRCLGDGTTALMAAAFQGNLTIVKQLLDLHASPGML--DANGRGAADFALGRGHLECAAAIHKAAAEEGDGPNKGLKDAGGGGEKGGAGGGFVYDLYCFQ 1420
            VLNPMER +DEAI++AFQ  + +    +   +S+   ++R   DG T LMAAA    + +++ LL  H+S  +L  D +G+ AAD A  +GH   AAA+    + E +      KD             +VYD+Y   
Sbjct:  163 VLNPMERNIDEAIWIAFQRNDFSVFFQVKHQISNAYEFQRP-ADGGTILMAAAMHNRVDVIELLL-AHSSASILLRDGHGKTAADIASDQGHAMAAAALRACESVEAE------KD-------------YVYDVYSID 279
[Close]
BLAST of mRNA_C-tenellus_contig8327.3.1 vs. uniprot
Match: A0A024UF80_9STRA (Probable RNA polymerase II nuclear localization protein SLC7A6OS n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UF80_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.540e-5
Identity = 47/138 (34.06%), Postives = 71/138 (51.45%), Query Frame = 2 
Query: 1019 VLNPMERLVDEAIFMAFQAKENTQ--ALLSAVSSHVNYRRCLGDGTTALMAAAFQGNLTIVKQLLDLHASPGML--DANGRGAADFALGRGHLECAAAIHKAAAEEGDGPNKGLKDAGGGGEKGGAGGGFVYDLYCFQ 1420
            VLNPMER +DEAI++AFQ  + +    +   +S+   ++R   DG T LMAAA    + +++ LL  H+S  +L  D +G+ AAD A  +GH   AAA+    + E +      KD             +VYD+Y   
Sbjct:  163 VLNPMERNIDEAIWIAFQRNDFSVFFQVKHQISNAYEFQRP-ADGGTILMAAAMHNRVDVIELLL-AHSSASILLRDGHGKTAADIASDQGHAMAAAALRACESVEAE------KD-------------YVYDVYSID 279
[Close]
BLAST of mRNA_C-tenellus_contig8327.3.1 vs. uniprot
Match: A0A485L2S2_9STRA (Probable RNA polymerase II nuclear localization protein SLC7A6OS n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2S2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.830e-5
Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 2 
Query: 1019 VLNPMERLVDEAIFMAFQAKENTQ--ALLSAVSSHVNYRRCLGDGTTALMAAAFQGNLTIVKQLLDLHAS-PGMLDANGRGAADFALGRGHLECAAAIHKAAAEEGDGPNKGLKDAGGGGEKGGAGGGFVYDLYCFQ 1420
            VLNPM+R VDE+I++AFQ  + +    +   V S + ++R   DG T LMAAA      ++++LL L ++   + D N + AAD AL +GH+  A A+    + E +      K+             FVYD+Y   
Sbjct:  172 VLNPMQRNVDESIWLAFQRNDFSMFFRVKHEVPSALGFQRP-ADGGTILMAAAMHNRTDVIEKLLVLDSTCVALKDWNEKSAADIALSQGHVAAATALRACESMESE------KE-------------FVYDVYSID 288
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8327.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KUZ7_9PHAE4.200e-2732.99Iwr1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FQE4_ECTSI2.860e-1833.68Heat shock protein, mitochondrial protein import, ... [more]
A0A6G0WEZ0_9STRA6.380e-834.51Probable RNA polymerase II nuclear localization pr... [more]
A0A3R6WKN3_9STRA1.570e-735.33Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4G2U8_9STRA2.850e-734.87Probable RNA polymerase II nuclear localization pr... [more]
A0A024UFZ1_9STRA1.530e-534.06Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024UF80_9STRA1.540e-534.06Probable RNA polymerase II nuclear localization pr... [more]
A0A485L2S2_9STRA2.830e-532.85Probable RNA polymerase II nuclear localization pr... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8327contigC-tenellus_contig8327:2639..5739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQE4
Model size1909
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.6e-20
EggNOG OGs28PNG@1|root,2QWAI@2759|Eukaryota
Descriptionankyrin repeats
Cds size1245
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790098.3859665-UTR-C-tenellus_contig8327:2638..29331680790098.3859665-UTR-C-tenellus_contig8327:2638..2933Choristocarpus tenellus KU2346UTRC-tenellus_contig8327 2639..2933 +
1680790098.4256048-UTR-C-tenellus_contig8327:5370..57391680790098.4256048-UTR-C-tenellus_contig8327:5370..5739Choristocarpus tenellus KU2346UTRC-tenellus_contig8327 5371..5739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790098.3988128-CDS-C-tenellus_contig8327:2933..37011680790098.3988128-CDS-C-tenellus_contig8327:2933..3701Choristocarpus tenellus KU2346CDSC-tenellus_contig8327 2934..3701 +
1680790098.4093056-CDS-C-tenellus_contig8327:4893..53701680790098.4093056-CDS-C-tenellus_contig8327:4893..5370Choristocarpus tenellus KU2346CDSC-tenellus_contig8327 4894..5370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8327.3.1prot_C-tenellus_contig8327.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8327 2934..5370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8327.3.1

>prot_C-tenellus_contig8327.3.1 ID=prot_C-tenellus_contig8327.3.1|Name=mRNA_C-tenellus_contig8327.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=415bp
MTSLPPAPHRVVIRVKRQRVETPIDSLLVAPAPVKHIDIGGSSTSRKRAA
DASFAEAFVTLSMEDTVLAQSERKCPVANFDNINGQHLRYKRFRTTGVDG
TSSVGASILCSMAPCSEPIIPVTGLEETRYETGPRNGTVQAMGERICGEH
LDFLEVRRLKAKGVSTRAAKVDTVGAMTGLSEQGNATNGKPASVSTEFHV
IDLVGYRGSDERRCLGDIQAEENRCLEGQDKKPQQQRRPAPVLNPMERLV
DEAIFMAFQAKENTQALLSAVSSHVNYRRCLGDGTTALMAAAFQGNLTIV
KQLLDLHASPGMLDANGRGAADFALGRGHLECAAAIHKAAAEEGDGPNKG
LKDAGGGGEKGGAGGGFVYDLYCFQPGVTNTDVLGGGLGVLGTEGTSTAT
GAPTVGKSGGTPQV*
back to top

mRNA from alignment at C-tenellus_contig8327:2639..5739+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8327.3.1 ID=mRNA_C-tenellus_contig8327.3.1|Name=mRNA_C-tenellus_contig8327.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3101bp|location=Sequence derived from alignment at C-tenellus_contig8327:2639..5739+ (Choristocarpus tenellus KU2346)
AACAATTAGCCGTCCGGGTGTGAACAGATTGACCTACACATCCCCAATAA
TAGCGATAGGGAGCAGATTGAGTAAGTGGAAAGTCTTAAGAGAAACAACC
ACTTTTCCCATTTCTCGAGCTGCTGTCCCCATCTCAACTAACCAATGTAA
GGTAATATCTGAGGGTCTTCCTCATTGTTCACGTAGGGATTTACGACACC
ATTACCAAATCCCAACACATACTATCCTGGTCACTATATTTTTTTCCAGT
ACTACAACACTCCCTTGATACAAGGAGTCGAGGAACTCGGAACCGATGAC
TTCTCTCCCGCCGGCGCCGCACCGGGTTGTCATCCGTGTGAAGCGGCAGC
GTGTAGAGACGCCAATCGATAGCCTACTTGTGGCCCCAGCCCCCGTCAAG
CATATCGACATTGGAGGTTCTTCTACGTCAAGGAAGCGTGCTGCCGATGC
CTCTTTTGCCGAGGCCTTTGTAACGCTCTCCATGGAAGACACCGTGCTTG
CCCAATCTGAACGGAAATGCCCTGTTGCGAATTTTGATAATATAAATGGA
CAACACCTCCGGTACAAACGTTTCCGCACTACTGGCGTGGACGGGACAAG
TTCGGTGGGCGCTTCCATTCTTTGTAGTATGGCCCCTTGTTCGGAGCCGA
TTATTCCAGTCACTGGGTTGGAAGAGACAAGGTATGAAACGGGTCCAAGG
AATGGAACCGTCCAGGCTATGGGAGAGAGGATATGTGGAGAGCACTTGGA
CTTTCTCGAGGTAAGGCGACTCAAGGCAAAAGGGGTCTCCACCAGGGCTG
CCAAAGTCGATACTGTGGGTGCTATGACAGGCCTATCAGAACAGGGAAAC
GCGACAAATGGTAAACCAGCCTCCGTCTCCACTGAGTTTCACGTTATCGA
CCTTGTGGGGTATAGGGGGTCAGATGAAAGGCGTTGTCTGGGGGATATTC
AAGCGGAAGAGAATAGGTGCTTAGAAGGCCAAGATAAGAAGCCACAGCAA
CAACGGCGACCGGCTCCTGTGCTCAACCCAATGGAGCGCCTAGTGGATGA
AGCAATATTCATGGTAAGAGGGTGTTCTTTAGTGTATGGTTCCATTCCAC
TCTGTGCTTCATTAAGACATTTCGCTCTATCTGGTTGTGGAAGATTTAAT
CAGATCAGTATTATCTTGCTGCATGCCAACAAGAAGATATATTGTGGCTG
GCAATGGGCTCGTCAATTGAAGACAAGACCCACTGCTGGAGAGAGCATTG
AGCATAGGAGGGTGCCGCTATGTTTGAAGCGGCTTGAGTAAGTTTGGGGA
GTTTTTGCCCTTCTGTTCTTATCGGCATTGTTTATGTGGATAATGAGATC
ATTTGCATGACATTGAGACAGTGTTTTCAATAGCTCATTGTGCTTTTCAT
TGTCAGACATGCACCACTGGTACCATTCTCTTGCGTTGAATTGACTTCTA
CCTCTCTATCCTCCTTCCACACAAAAAGTACTGGTTTGGTTAGCCTAACA
AACTGCACTTGACCCTTATTGATAACCTAGTTCTCATAAAATAGAAGATA
TCCCAAACTACAGCCTTCCTGCTTCTTACCCTCATCAGTTCCTCTTTTTA
TACATTATCAGAGTGCCATGTGTTTCTGCATGTTTAAGCGCTGTTATTAC
AGTGAAGCCTCTTTCAAGAGTTGCTCCTTCCTCCCTCCACACTACACCAA
ACATTCAGTGAGCAAAGGTGTGATACTACTCTCAGAGCACCCTCTTTCTT
GCCAGCAAAGAACGCTTCTGTATCTTCAATACTCTATTTCTGATGGTGTA
CTTCTATATTTGTAGTACGTTGCCACTTCCCCAAACTCCCTGTAAGGGTG
GGATTACCAATGACGCCATGTGTCCTGACTCCACTGTCCTCCTGTGTGCT
TGTCCTATGAGGATTTATTTCTCAACTCTCTCTACAAGAACCACTAGCTT
CTCCAGGCCACTCCTTTTTTGTTGCTACCTTGACCTTCTACTTAAGATTT
GAAAATCCTATACAAGGCTGTCTGTTACTAATACCCGTGTAAAATTTTTT
CGGTAATTACTTGATGAGCCCCTAACCGTTGTGCCTTCACTGACCCACTC
CATGACACACACCCTCCCCCCTCCTACCACAGTCTGTCAATGTCTTCTTC
ATTGCCTGTCCCTTCCCCACAGCCCCTCCAACCCCCCCGTCTCATGCCAA
GGAACTCCCCACCAAGTCCTGATATGTACCCCTTCATCTGTTCTCTGCTC
CATAGGCGTTTCAGGCCAAGGAGAACACGCAAGCCCTACTCTCTGCTGTG
TCATCTCATGTCAACTACCGTCGATGCCTTGGTGATGGCACAACTGCCCT
CATGGCAGCCGCCTTCCAAGGAAACCTGACCATTGTGAAGCAACTACTTG
ATCTCCATGCCAGCCCTGGGATGCTTGATGCAAACGGGAGAGGTGCTGCA
GACTTTGCGCTTGGTCGTGGGCACCTTGAGTGTGCAGCGGCAATCCACAA
AGCAGCTGCTGAGGAGGGAGATGGCCCCAACAAGGGACTGAAGGATGCAG
GCGGGGGTGGGGAGAAGGGTGGAGCTGGGGGAGGCTTTGTATATGACCTT
TACTGCTTTCAGCCAGGTGTGACCAACACCGATGTGTTGGGGGGGGGCTT
GGGAGTCTTAGGCACTGAGGGCACCTCCACTGCAACTGGGGCACCAACAG
TTGGCAAGTCTGGTGGCACACCTCAGGTTTGACATGGAGCTCACAGAAGA
GTGTGAAGATTGGATGAAAGAGAGGGTGGGAGAGAGAGGCTCTGGCAGTG
TCTGTGTGTGAAAAGTAGGGACCTTTTTCCTCTGTGAATTAGATGCCAAG
GAGAGCATGTATTGAAATGACTGGCCTGTGCATTGACTTTTGTGTGGCAA
ATGTAGTCCTGTGGATGCTGCCTTATCTCCTTGCCTACTGCTATTTAAAG
TTCACCCAATTGATCCTAAGGAAGTTGCGCTGTTTGGCAGGCGATACAAT
CCCAGACTGGAGCTTTCAAGCACCTTGGTTCTTAAAGATGCTACCACTGT
TGTCCTTAACTGTTAAATTATTTATTTCCTATCTTGTGCTTTTGAGGGGG
G
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig8327:2639..5739+

>mRNA_C-tenellus_contig8327.3.1 ID=mRNA_C-tenellus_contig8327.3.1|Name=mRNA_C-tenellus_contig8327.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1245bp|location=Sequence derived from alignment at C-tenellus_contig8327:2639..5739+ (Choristocarpus tenellus KU2346)
ATGACTTCTCTCCCGCCGGCGCCGCACCGGGTTGTCATCCGTGTGAAGCG
GCAGCGTGTAGAGACGCCAATCGATAGCCTACTTGTGGCCCCAGCCCCCG
TCAAGCATATCGACATTGGAGGTTCTTCTACGTCAAGGAAGCGTGCTGCC
GATGCCTCTTTTGCCGAGGCCTTTGTAACGCTCTCCATGGAAGACACCGT
GCTTGCCCAATCTGAACGGAAATGCCCTGTTGCGAATTTTGATAATATAA
ATGGACAACACCTCCGGTACAAACGTTTCCGCACTACTGGCGTGGACGGG
ACAAGTTCGGTGGGCGCTTCCATTCTTTGTAGTATGGCCCCTTGTTCGGA
GCCGATTATTCCAGTCACTGGGTTGGAAGAGACAAGGTATGAAACGGGTC
CAAGGAATGGAACCGTCCAGGCTATGGGAGAGAGGATATGTGGAGAGCAC
TTGGACTTTCTCGAGGTAAGGCGACTCAAGGCAAAAGGGGTCTCCACCAG
GGCTGCCAAAGTCGATACTGTGGGTGCTATGACAGGCCTATCAGAACAGG
GAAACGCGACAAATGGTAAACCAGCCTCCGTCTCCACTGAGTTTCACGTT
ATCGACCTTGTGGGGTATAGGGGGTCAGATGAAAGGCGTTGTCTGGGGGA
TATTCAAGCGGAAGAGAATAGGTGCTTAGAAGGCCAAGATAAGAAGCCAC
AGCAACAACGGCGACCGGCTCCTGTGCTCAACCCAATGGAGCGCCTAGTG
GATGAAGCAATATTCATGGCGTTTCAGGCCAAGGAGAACACGCAAGCCCT
ACTCTCTGCTGTGTCATCTCATGTCAACTACCGTCGATGCCTTGGTGATG
GCACAACTGCCCTCATGGCAGCCGCCTTCCAAGGAAACCTGACCATTGTG
AAGCAACTACTTGATCTCCATGCCAGCCCTGGGATGCTTGATGCAAACGG
GAGAGGTGCTGCAGACTTTGCGCTTGGTCGTGGGCACCTTGAGTGTGCAG
CGGCAATCCACAAAGCAGCTGCTGAGGAGGGAGATGGCCCCAACAAGGGA
CTGAAGGATGCAGGCGGGGGTGGGGAGAAGGGTGGAGCTGGGGGAGGCTT
TGTATATGACCTTTACTGCTTTCAGCCAGGTGTGACCAACACCGATGTGT
TGGGGGGGGGCTTGGGAGTCTTAGGCACTGAGGGCACCTCCACTGCAACT
GGGGCACCAACAGTTGGCAAGTCTGGTGGCACACCTCAGGTTTGA
back to top