mRNA_C-tenellus_contig8321.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8321.1.1
Unique NamemRNA_C-tenellus_contig8321.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8321.1.1 vs. uniprot
Match: A0A6H5KBR4_9PHAE (Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.360e-10
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2 
Query:  815 RLGIVTPEHQEAGMTGHERKERRKIRNRMSAQQHRERQRRHVETLEQCLREKDDQILSLKKQAQELEEKNKNLEERVQKLEA 1060
            ++ ++ P      M+  ERKERRKIRNRMSAQQHRERQR+ V+TLE CLR +D++I  L+KQ   L E+NK L ERV +LE+
Sbjct:  212 KISVLAPSSFGGDMSTQERKERRKIRNRMSAQQHRERQRQRVDTLEDCLRLRDNEIAKLEKQVASLTERNKELAERVLQLES 293
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8321.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBR4_9PHAE1.360e-1056.10Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8321contigC-tenellus_contig8321:189..6289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1913
Hectar predicted targeting categoryother localisation
Exons4
Cds size1617
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790098.2024477-UTR-C-tenellus_contig8321:188..4831680790098.2024477-UTR-C-tenellus_contig8321:188..483Choristocarpus tenellus KU2346UTRC-tenellus_contig8321 189..483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790098.2156203-CDS-C-tenellus_contig8321:483..10621680790098.2156203-CDS-C-tenellus_contig8321:483..1062Choristocarpus tenellus KU2346CDSC-tenellus_contig8321 484..1062 +
1680790098.2246635-CDS-C-tenellus_contig8321:2312..24381680790098.2246635-CDS-C-tenellus_contig8321:2312..2438Choristocarpus tenellus KU2346CDSC-tenellus_contig8321 2313..2438 +
1680790098.233504-CDS-C-tenellus_contig8321:4952..51081680790098.233504-CDS-C-tenellus_contig8321:4952..5108Choristocarpus tenellus KU2346CDSC-tenellus_contig8321 4953..5108 +
1680790098.2428768-CDS-C-tenellus_contig8321:5533..62891680790098.2428768-CDS-C-tenellus_contig8321:5533..6289Choristocarpus tenellus KU2346CDSC-tenellus_contig8321 5534..6289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8321.1.1prot_C-tenellus_contig8321.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8321 484..6289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8321.1.1

>prot_C-tenellus_contig8321.1.1 ID=prot_C-tenellus_contig8321.1.1|Name=mRNA_C-tenellus_contig8321.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=539bp
MDPSPPDPRTPSGPVASSPNAVADPGLVKSEPSPAKSLSPALSVPGAVVP
NILPMMVKGGVGGISGAPMFPMFPGMFTPAALAAAAAAASAAVSAGSASG
PSTESMPRKSKDTRKRKRVSEVGEDDIKVEVGEAVDEATGVEVKGDSGAV
SGGGTGGGTGGLGGMLWPGMGRLRLGIVTPEHQEAGMTGHERKERRKIRN
RMSAQQHRERQRRHVETLEQCLREKDDQILSLKKQAQELEEKNKNLEERV
QKLEAGEFPTLEDVLLGLDDTWSSESASHAPPEVLREICTNLSGVLAGDK
DTEVGIKAKTRSRNGTKNHAAMPISSTDLSKTTSDTSMEITRVIETGLSV
CSSLPLELDVEGEVTRATTKAPAIGVVGVEDSDEEVVTTDHAHSSSEEDS
EDLLKLTTIYSSPMESSRGVGGRGEGGVITALPLSPSHDFSGEEGIEQGE
GEEVPADHTVGLTRRYVVPNAVRRMVRRDCGGDGVAGNEELTDGGAGTLT
VTEDAPITGCVEVYDKGGTRVVAVVDGSQIGDDPNPMSK
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mRNA from alignment at C-tenellus_contig8321:189..6289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8321.1.1 ID=mRNA_C-tenellus_contig8321.1.1|Name=mRNA_C-tenellus_contig8321.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=6101bp|location=Sequence derived from alignment at C-tenellus_contig8321:189..6289+ (Choristocarpus tenellus KU2346)
CTTTACTTTACTCCTACTATCACCACTGCCTACTACTGTGTCTGTGATGA
GTGGTTATCAAACTAAATCATAGGATATAGAAATCCTTCTTCTAAACGAT
ATAGATGGTAGGCTTGAGTTACAAATAATCTCTTATCTTTGTGAGATCTC
AAACAGTCGAGGTTCCCTCAGTTAGATCCAGCATAAGGGATGCTGTAGAC
TGGTAGTTGACTACGGAGAGATCTAAACAGCATTTCCGAGGGCTGGACTT
CACAATATTCTACAGTACGCCACTTATCCTGGGTTGCTTCCTCAAATGGA
TCCATCTCCGCCAGACCCGAGAACCCCTTCGGGCCCTGTGGCTTCATCGC
CGAATGCCGTGGCTGATCCAGGACTGGTGAAGTCAGAGCCATCGCCTGCG
AAATCTCTTTCTCCTGCCTTGAGCGTGCCCGGTGCGGTCGTTCCAAACAT
CCTTCCCATGATGGTAAAGGGTGGAGTAGGAGGAATATCGGGGGCTCCAA
TGTTCCCTATGTTCCCAGGAATGTTCACCCCTGCTGCCCTTGCTGCTGCT
GCTGCCGCTGCCTCCGCCGCTGTCTCCGCTGGTTCGGCCAGCGGCCCATC
CACGGAGTCTATGCCTCGGAAATCCAAGGATACCCGAAAACGAAAGCGTG
TGAGCGAGGTGGGAGAGGATGACATCAAGGTCGAAGTTGGTGAAGCTGTG
GACGAAGCGACTGGGGTAGAGGTTAAGGGGGATTCGGGCGCGGTTAGTGG
AGGAGGAACAGGAGGAGGAACGGGGGGACTTGGAGGGATGTTATGGCCGG
GTATGGGGAGGCTAAGGCTGGGGATAGTGACTCCAGAGCATCAGGAGGCA
GGGATGACAGGTCATGAGCGGAAGGTGAGGGGAGACTTTCTTACTTTGCA
ATGAATGTTTTTGGAATTGTTCCGTGTACCAGGGATTATAGAGGTCTCTA
GGTGGACGTCCCTGTATTCCGTGTCGGTCTTACGTCTTTACCAGGCGTAG
CATGGATCAGGTGGCATGCAGAGGTAGTCGCCGATTTGCTGTTGGTAACC
ACCAGGAACGAAGGATAAATGCAGGTTATATTTCTTCAAGAGTTTCTATT
CTTATTCAAAGCAAACACTCCTGTCTTTCCCTCACCCCCACCCACCTCCC
CCAGTACCTCCTCCCTTTCTTCCAAAATACCGCTTTTTGTGTACTCTATC
ACTGAAAAAGGAGATAAGTTGGTTGAGCTTGTACTGTTTCAAGGGGATTA
CTGCTGTATCCGAGCAACAGAAGGGAGAAACAAATAAATAATAATAATAA
ATAAATAAGCAATGAAAGCATCCCTTCCTTCTCCAACCTTCTTATACATT
GATCGATTCTTCATCTTTCCCTTCTTGAGGTATTAATCTCTGCCTTGCAA
TCTTTACCTAACCATAATCTTCCGCAGGCTTACTACAGTCTGTCTAACAT
TACCCTCAACTATCAGTGCATTTTTTTAGAGCTCTATTTAGTAGATATAC
GCATGTAAGCTGCTCTTTTCTCCCATTGAAGTGCACAGGGGAGTGAGTCC
CCCTGTCCTTAGGAGCCCCCACTGTCCTTGGGGAACCCCCATCATTCTCT
TTTCACTTCTTCAAACAAAGCTTTAGGTTTTTTTATTATTATTTTTCACA
TGGAGGTTAGGGTTAGATTATCAAGAATGAGAGTGAAGATGTGAAAGGTG
GTGGATTGTTGACAGGTTGTGGTTCCCCAGTGCACACTATACTCCTCTAA
AATGTTTCTTGGACTGGTTAGTGATACTTTTCACAGACAAGTTAGGGTTA
GGGTTAGGGTTAGGCTATTTTTTTTGCTTGTGAAATAGGGGGAGAAATTA
TGACACTGTGGCTCCTGAAGACAAGGGGGTTCCCCTATACACTGCAATGT
TCCTTCCCCATGCCCAACCTTGACCAAATCTAACCAAATTTCTAGAACAC
TTTTTTCTGACTTCTAACCCTAGCCGTAAGTCTGAACCACTACCTGAACA
TTATACTAGATCCTTGGATATGCAGAGAGCATGTTTTCGTCTGAAGTACC
TTCAAACTCATCCACTATTCACCCTCGCACTTCTGCACCCCTCCAATCCC
ACTAACCCTAACCCTAACCCCTAGGAACGGAGAAAGATCCGTAATCGGAT
GAGTGCCCAGCAGCATCGGGAAAGGCAACGCCGCCATGTGGAAACCCTTG
AACAGTGTCTCCGTGAAAAGGATGATCAGATACTCTCCCTCAAGAAACAA
GTGAGTCTAAAGAAAAAAAAGATAAAAAGTACAAGTACGGTGGTTTGCGT
CAACAAGTAACAAGACGAGATGAAGGTTATCGAGACAAGACATGTGGAAC
CCCCTCTTGAAGTCCCAGCGCCTTCCGTTTAGATTGTTGTACAGATTTTT
TGTGGTGTGGTTTTTTGAAGTGACACAGAGGCTTTGCTGGGCGTTCAATT
GGGCAGGGAAGTCTACTGGACTGTGGTACAACCCCCGATTCTGGGTCAGA
CCTGTCAGGAATTTTGATAACTGCACCAGTCTGTGGGCTGGGTCGTAGAA
AGAGCTGTTAGGGTTAGGGTTAGGGTACTGGCCCTCAGAAATGTTTTTTA
CTTGGCCCACTTGTAGAACGTAGGGTTAGGGTTAGGGTTAGGGTTAGAGA
CCATTTGTGAAATATCAAAACTGACCTGGTTCTGGTCTGTTCACATATTC
CTGGCCCCTCAAGTTTTTGTCTTGATGGGGGGGAAGTTGGTGTGGTAATA
GATTTTAGGGCGACAACGTAGCCAATGAGGTTAGCTCTATACATGAAATG
AGGCTTCTCATTGGTCGAAATCTCATTCTACACAAATTGAGGCTTCTCAT
TTGTGGATGCTTTGTCGTTGTCGCTGAAATTGCTGGCAGAAGTACCATGA
ACAGAACGCCTGTGTTGATGTTGATTGAACTATTTTGATGACAGTAGCCT
TCCTATTTGGCATGATCATCGTTGTAGAAACTGCTACCACTGGAACTTTT
CCCCTTTTGTTTCTGGTTCTAAAAGTTCTCAAAATGACCTGATATGGTTC
TAAAGGGTCTCAAGTATGTGGCAAGAAGGGATAAAAAATATATATGTTGT
GTGGATTGCTATGATGCTGTATTCTGTGTCTCACCAAGACTGAGGGTTAG
GTATGTGTAGTGGGGCAAACTACAACAAATTTGGCCTATCAAGAAGCGTG
TGTGAAACTGGCAGCCAATAGGATGCAAAGCTTCACTACCCTCTCATATT
CTGGTGTAGTTTTTCTGTCAAGAGAGAGCGTTGAGGAAATAGAGATTGGT
AGCAAAAAGCCTGTATTATAACAGTAATAGTAGAGTGTGGTATAGTCTTA
TCAGGAAACCTTGTGTCTCAATGGTCAAGGAGTTGGCCCTCCATGTTAAT
TTTATGGGTTCGAACCCCTTTACACCAGACTTCTTTTCACGGAAACCTGG
CTTTGATAATGCTATTCCATCAGGCAAGCACAATGGATTGTAAATCACCT
CTATACTGTGTAACTATTCTATCTGTGGCTAGACAATAAGTACGCTGGAC
TGAGATCGAGGTGGAAAATTCGGGGTGGGTCCAGCAGGGAATTTGAGGGA
GGAGAGAGGGTGATGAGTAGGGGGAGTGCTGAACCTGATACATGAGAAGC
AAGGCAGGAATGGAGACATTCCGATTTGCGGTAGTGCAGTAGTTATTCAC
AGTATTCACAGTATTATAGTTGGTATGGGAAGTAGTGTAGTGTGCATTAA
CAAGTAACTCTTATCACCGGCTGGGATATGTCCCCAAATGAATGCGAAGT
AAATTGTAGTTACAAATGATATTCATGATCATGGTGTGGTGTCAGTGCCA
ATGGTTGGGTTAGTGCCGTCCCGATATGATTCTTTAGTATGAGTAGACTC
TTTGAACAGTGCTGCAAAGCGACCCTGGTAAGGTTTTTTGATGCCGCTTG
CGTCGGTGTAAAGGGTTAGGGTTAAACTATCCCAGAACTATCCATCCCAG
AGTGTAAAAGTGCAGTGAGATGGTGCATGGTGTCCTGCTTGTGTTTGTTA
CCAGTGCTGCCTACTGATCTCACCGCAATACTTGTGCAAACTCATGCCAA
TGATCAGAGGTATAGTGCTTTAGTTGAAGCAGTTGCTAGAAATAGTTGGG
GTTAGATAGGGTAAGGAGCTTGTGAGCATTATATTGCTGCGAATGGACTC
AACTTTTTGACAGTGGGTTTTGCCTGCCTTAACTAGCTCTAACCAATGGT
GTTTAGGGTTAGGGTTAGGGTTGAGCCACGTACAACAAGTGATTCGAACC
ACAAGCAATGGGAAGAAACTTGAGTATGTGCAATGAAATCTGCCCATACT
GCCACTGGTTCTTTCATGTATCAATGCCTCACCAATTATGCCTCAAACTT
GCAATCGCTGCTCCTTTCACCTCTATGCTGTATGCTTGGAAGGCGTGAGT
GGCCCTTGCCTCTGTTGGGGAGGCTAGTTACGCAGTGTTGATAGTATTGG
AACAATAAATATTTAGCTTGAACCACAATGCTGCACCCAAGATCCTCTTT
CCATCTTGATGATTGTTCTATTTGATTAATTGAACAAATTTGTGTGCATG
TCTACAATAGGTTATGCCTGCTGATGTTTTTTGGTATATGTTATGAGACA
GGGATAAGCCGTGAGGAAAAATAACTTTTACATTTGCTGCAGAACTCTCA
TGTGCCTACCCCCCCCCCCCTCCGCCCCCCCACCCTACATTTCCTCTTCC
TCCTTTTTTGAAAGGCACAAGAACTGGAGGAAAAAAATAAAAACCTCGAA
GAACGGGTACAAAAGCTGGAAGCTGGGGAGTTTCCAACCTTGGAGGATGT
TCTACTTGGATTGGATGATACTTGGTCTTCTGAGTCCGCTTCTCATGCAC
CTCCGGAGGTGCTGCGCGAGGTGGGTAAGATTGAGGAAATTGAGGCAGGC
CCTGTAGTGCCATGGCTCTGCTATGGGAGCCTTGTTGTGTTTGGTTTTTG
TTCTCAGAAACAATTGTGAGTACAGTGCATGTATATGTATTTATATCTGT
GTAGAACTTCGTGTGAAGGTAGCATGAAGTAGTGCATAGAGTAAACTGTT
TGCTGAGTGCATTACTTGCTGTAAAGCAAGAGTTTCTATCTGGAGGGTGA
GATACTACAGGATGAACATGTGTTCTTATGCTGTAAATATTGTTTGTGAA
TTCTGTCCCTTATCCCCCTGCCCCCTGCACACTCCTGCTTTTATTCACAC
CAGAAACAAAGTAGTTGAGCACCCCCTTAGAATGTGACAGACTGGATTCC
TTCCCTGCACTTTGCCTTTCACCTTGAATGTTGTTACACAAACAGATATG
CACAAATTTGTCAGGGGTTTTGGCAGGTGATAAGGATACGGAAGTAGGAA
TAAAGGCAAAGACAAGGTCAAGAAATGGGACAAAAAATCATGCAGCGATG
CCAATATCAAGTACTGATTTGTCAAAGACCACCTCTGACACAAGCATGGA
GATCACCAGGGTCATAGAAACTGGTTTATCGGTCTGCAGTTCATTGCCAT
TGGAGCTGGATGTTGAAGGAGAGGTGACTAGGGCTACCACAAAAGCGCCA
GCAATAGGGGTAGTTGGTGTGGAGGATTCAGATGAGGAGGTAGTAACCAC
AGATCATGCGCATTCCTCATCTGAGGAGGATTCTGAGGACCTGTTGAAAT
TGACCACGATCTATTCATCTCCAATGGAGAGTTCGCGTGGTGTTGGGGGC
AGAGGGGAGGGAGGGGTCATTACTGCTCTTCCTCTGAGTCCTTCCCATGA
CTTCAGCGGAGAGGAGGGCATTGAGCAGGGGGAGGGAGAAGAGGTACCTG
CAGATCATACGGTGGGGCTGACAAGAAGGTATGTTGTGCCAAATGCTGTG
AGAAGGATGGTTCGAAGAGATTGTGGTGGGGATGGGGTTGCTGGCAATGA
AGAGTTGACAGATGGTGGAGCAGGTACTTTGACAGTTACAGAAGATGCAC
CAATTACTGGGTGTGTGGAGGTGTATGATAAAGGTGGTACAAGAGTGGTT
GCTGTTGTTGACGGTAGTCAGATTGGGGATGACCCTAACCCTATGTCGAA
G
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Coding sequence (CDS) from alignment at C-tenellus_contig8321:189..6289+

>mRNA_C-tenellus_contig8321.1.1 ID=mRNA_C-tenellus_contig8321.1.1|Name=mRNA_C-tenellus_contig8321.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1617bp|location=Sequence derived from alignment at C-tenellus_contig8321:189..6289+ (Choristocarpus tenellus KU2346)
ATGGATCCATCTCCGCCAGACCCGAGAACCCCTTCGGGCCCTGTGGCTTC
ATCGCCGAATGCCGTGGCTGATCCAGGACTGGTGAAGTCAGAGCCATCGC
CTGCGAAATCTCTTTCTCCTGCCTTGAGCGTGCCCGGTGCGGTCGTTCCA
AACATCCTTCCCATGATGGTAAAGGGTGGAGTAGGAGGAATATCGGGGGC
TCCAATGTTCCCTATGTTCCCAGGAATGTTCACCCCTGCTGCCCTTGCTG
CTGCTGCTGCCGCTGCCTCCGCCGCTGTCTCCGCTGGTTCGGCCAGCGGC
CCATCCACGGAGTCTATGCCTCGGAAATCCAAGGATACCCGAAAACGAAA
GCGTGTGAGCGAGGTGGGAGAGGATGACATCAAGGTCGAAGTTGGTGAAG
CTGTGGACGAAGCGACTGGGGTAGAGGTTAAGGGGGATTCGGGCGCGGTT
AGTGGAGGAGGAACAGGAGGAGGAACGGGGGGACTTGGAGGGATGTTATG
GCCGGGTATGGGGAGGCTAAGGCTGGGGATAGTGACTCCAGAGCATCAGG
AGGCAGGGATGACAGGTCATGAGCGGAAGGAACGGAGAAAGATCCGTAAT
CGGATGAGTGCCCAGCAGCATCGGGAAAGGCAACGCCGCCATGTGGAAAC
CCTTGAACAGTGTCTCCGTGAAAAGGATGATCAGATACTCTCCCTCAAGA
AACAAGCACAAGAACTGGAGGAAAAAAATAAAAACCTCGAAGAACGGGTA
CAAAAGCTGGAAGCTGGGGAGTTTCCAACCTTGGAGGATGTTCTACTTGG
ATTGGATGATACTTGGTCTTCTGAGTCCGCTTCTCATGCACCTCCGGAGG
TGCTGCGCGAGATATGCACAAATTTGTCAGGGGTTTTGGCAGGTGATAAG
GATACGGAAGTAGGAATAAAGGCAAAGACAAGGTCAAGAAATGGGACAAA
AAATCATGCAGCGATGCCAATATCAAGTACTGATTTGTCAAAGACCACCT
CTGACACAAGCATGGAGATCACCAGGGTCATAGAAACTGGTTTATCGGTC
TGCAGTTCATTGCCATTGGAGCTGGATGTTGAAGGAGAGGTGACTAGGGC
TACCACAAAAGCGCCAGCAATAGGGGTAGTTGGTGTGGAGGATTCAGATG
AGGAGGTAGTAACCACAGATCATGCGCATTCCTCATCTGAGGAGGATTCT
GAGGACCTGTTGAAATTGACCACGATCTATTCATCTCCAATGGAGAGTTC
GCGTGGTGTTGGGGGCAGAGGGGAGGGAGGGGTCATTACTGCTCTTCCTC
TGAGTCCTTCCCATGACTTCAGCGGAGAGGAGGGCATTGAGCAGGGGGAG
GGAGAAGAGGTACCTGCAGATCATACGGTGGGGCTGACAAGAAGGTATGT
TGTGCCAAATGCTGTGAGAAGGATGGTTCGAAGAGATTGTGGTGGGGATG
GGGTTGCTGGCAATGAAGAGTTGACAGATGGTGGAGCAGGTACTTTGACA
GTTACAGAAGATGCACCAATTACTGGGTGTGTGGAGGTGTATGATAAAGG
TGGTACAAGAGTGGTTGCTGTTGTTGACGGTAGTCAGATTGGGGATGACC
CTAACCCTATGTCGAAG
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