mRNA_C-tenellus_contig8320.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8320.3.1
Unique NamemRNA_C-tenellus_contig8320.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8320.3.1 vs. uniprot
Match: A0A6H5LEA1_9PHAE (Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LEA1_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 9.250e-91
Identity = 167/296 (56.42%), Postives = 207/296 (69.93%), Query Frame = 1
Query:  310 AHPSTE-LPKSNPDMEASKGLNVDGARTILEELLDRCKEATRSKGAMESSHTGSSEWAGFRTTPELLQGVSSTLARIFSRSRRSDGTALCWSWLTLAPQPSRIEIAS--DPRFSIFVTVLPAGNGSPPSHRPIFGSQIMSRVLSGEVEQVKANSQRIIGRSHHSTETPVWSSYGGGVRRLVNEGFQPAVVLEVVFYDWSRGSGYIGGYAAM-PSGSGNAERLLD----GQNEASG-GSTGTGES---EQGRLLILS--TSPCDPHLLLRDGDIYEEEEEGEGGETGEDLILVRRDG 1155
            AH + E +P S          + +G  T+L+ELL+RC EAT+S  A ESSHTGSSEWAGF+T P LL+GV + L+R   RSR SDG+AL WSWLTL+P+P R+ +A+  D R  +++TVLPAGNG+PPSHRP++G  I+SRVL+GEVEQVK+NS+R+IGRS HS ETPVWSS+GGG RRL+NE FQPAV+LEVV YDWSRGSGY G YAA   S SG+AE   +    G+ EA+G    G GES   E G L I++  + PC P LL RDGD+YEE            L LVR DG
Sbjct:  102 AHKTEEGVPSSTTTAGGRSVPDGEGELTLLDELLERCAEATKSDAAAESSHTGSSEWAGFKTAPALLEGVRAVLSRARQRSRHSDGSALAWSWLTLSPRPVRVAVATPEDGRVGVYLTVLPAGNGNPPSHRPMYGCHILSRVLAGEVEQVKSNSKRVIGRSTHSLETPVWSSFGGGARRLINESFQPAVILEVVMYDWSRGSGYSGSYAAPGTSSSGSAELRAEAEGVGRAEAAGVEGDGGGESSPAENGILPIVAMDSCPCPPALLFRDGDVYEEXXXXXXXXXX--LTLVRSDG 395          
BLAST of mRNA_C-tenellus_contig8320.3.1 vs. uniprot
Match: A0A836CBN6_9STRA (Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN6_9STRA)

HSP 1 Score: 155 bits (391), Expect = 7.510e-38
Identity = 100/257 (38.91%), Postives = 133/257 (51.75%), Query Frame = 1
Query:  391 ILEELLDRCKEATRSKGAMESSH--TGSSEWAGFRTTPELLQGVSSTLARIFSRSRRSDGTALCWSWLTLAPQPSRIEIASDPRFSIFVTVLPAGNGSPPSHRPIFGSQIMSRVLSGEVEQVKANSQRIIGRSHHSTETPVWSSYGGGVRRLVNEGFQPAVVLEVVFYDWSRGSGYIGGYAAMPSGSGNAERLLDGQNEASGGSTGTGESEQGRLLILSTSPCDPHLLLRDGDIYEEEEEGEGGETGEDLILVRRDG 1155
            +  +LL  C+ A       E +   +GSSEW+GF T    LQ V  +L +     R   G +L WSWL L+  P R+ +     F + +TVLP G   PP+HRP+ G+ ++S V  G+VEQVKAN QRII R+ H+ ETP+W+S+GGGVRRL N     A +LEV+FY   RG      Y       G AER  +       G           +  LS  PCDP +L R        EEG G E GE L++  R+G
Sbjct:   98 VFHQLLQDCQTAADYAATAEPADAGSGSSEWSGFWTAEPKLQQVLDSLQQCSPAWRGGRGASLAWSWLGLSTMPLRVMLHQGGGFGVLLTVLPPG-AKPPAHRPMIGAHMLSIVCQGDVEQVKANGQRIINRTRHTPETPIWNSFGGGVRRLANMSVTTAYILEVLFYG-KRGPPE---YDTRAPDGGAAERNAEADEFILSGPRA--------MATLSAPPCDPEVLFRSVG-----EEG-GDEGGEVLVIRGREG 335          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8320.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LEA1_9PHAE9.250e-9156.42Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A836CBN6_9STRA7.510e-3838.91Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8320contigC-tenellus_contig8320:2183..4296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LSL6
PFAMsAAA,CDC48_N
Model size1156
Max annot lvl2759|Eukaryota
KEGG koko:K06027
KEGG TC1.F.1.1
KEGG Pathwayko04138,ko04721,ko04727,ko04962,map04138,map04721,map04727,map04962
Hectar predicted targeting categorysignal anchor
GOsGO:0000166,GO:0000502,GO:0000731,GO:0002020,GO:0002082,GO:0002790,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006897,GO:0006909,GO:0006914,GO:0006919,GO:0006928,GO:0006950,GO:0006974,GO:0007034,GO:0007041,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009306,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031593,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033554,GO:0034098,GO:0034214,GO:0034404,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036435,GO:0036503,GO:0036513,GO:0040011,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045732,GO:0045838,GO:0045862,GO:0045935,GO:0045937,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0051788,GO:0051881,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0060828,GO:0061134,GO:0061136,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098657,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1902494,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905368,GO:1905369,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000116,GO:2000152,GO:2000158,GO:2001056,GO:2001169,GO:2001171
Exons4
Evalue1.38e-96
EggNOG OGsCOG0464@1|root,KOG0741@2759|Eukaryota
Ec32 ortholog descriptionATPase, AAA-type, core
Ec32 orthologEc-09_002110.1
EC3.6.4.6
DescriptionSNARE complex disassembly
Cds size1101
COG categoryO
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790098.1240902-UTR-C-tenellus_contig8320:2182..22361680790098.1240902-UTR-C-tenellus_contig8320:2182..2236Choristocarpus tenellus KU2346UTRC-tenellus_contig8320 2183..2236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790098.1394117-CDS-C-tenellus_contig8320:2236..26921680790098.1394117-CDS-C-tenellus_contig8320:2236..2692Choristocarpus tenellus KU2346CDSC-tenellus_contig8320 2237..2692 +
1680790098.1488955-CDS-C-tenellus_contig8320:2910..31471680790098.1488955-CDS-C-tenellus_contig8320:2910..3147Choristocarpus tenellus KU2346CDSC-tenellus_contig8320 2911..3147 +
1680790098.1598186-CDS-C-tenellus_contig8320:3629..37111680790098.1598186-CDS-C-tenellus_contig8320:3629..3711Choristocarpus tenellus KU2346CDSC-tenellus_contig8320 3630..3711 +
1680790098.17255-CDS-C-tenellus_contig8320:3970..42961680790098.17255-CDS-C-tenellus_contig8320:3970..4296Choristocarpus tenellus KU2346CDSC-tenellus_contig8320 3971..4296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8320.3.1prot_C-tenellus_contig8320.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8320 2237..4296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8320.3.1

>prot_C-tenellus_contig8320.3.1 ID=prot_C-tenellus_contig8320.3.1|Name=mRNA_C-tenellus_contig8320.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=367bp
MYCVISARGSSRNRQTAEIMGISLALGISVFILALCPGVGFAPHVTTGTV
ITAAKASQKLRADHYGRQLLKHQCQEYTERWFRLRAHPSTELPKSNPDME
ASKGLNVDGARTILEELLDRCKEATRSKGAMESSHTGSSEWAGFRTTPEL
LQGVSSTLARIFSRSRRSDGTALCWSWLTLAPQPSRIEIASDPRFSIFVT
VLPAGNGSPPSHRPIFGSQIMSRVLSGEVEQVKANSQRIIGRSHHSTETP
VWSSYGGGVRRLVNEGFQPAVVLEVVFYDWSRGSGYIGGYAAMPSGSGNA
ERLLDGQNEASGGSTGTGESEQGRLLILSTSPCDPHLLLRDGDIYEEEEE
GEGGETGEDLILVRRDG
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mRNA from alignment at C-tenellus_contig8320:2183..4296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8320.3.1 ID=mRNA_C-tenellus_contig8320.3.1|Name=mRNA_C-tenellus_contig8320.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2114bp|location=Sequence derived from alignment at C-tenellus_contig8320:2183..4296+ (Choristocarpus tenellus KU2346)
GAGTACAGTATTGTTACAAATTGAACAACATAATAGGCTTAGTACAGGCA ACGCATGTACTGTGTAATCAGTGCGAGAGGATCATCCAGGAATCGCCAAA CCGCAGAGATCATGGGAATTTCGCTTGCGCTTGGGATATCTGTCTTCATC CTCGCGCTCTGCCCTGGGGTAGGCTTTGCACCTCATGTGACCACGGGTAC AGTCATCACTGCAGCCAAGGCGAGTCAGAAATTGCGAGCTGATCACTATG GTAGACAGCTTCTCAAGCATCAATGCCAGGAGTACACCGAGCGGTGGTTT CGCCTTCGAGCCCATCCATCCACCGAATTGCCCAAGTCAAACCCAGATAT GGAAGCGAGTAAGGGGTTAAATGTCGATGGTGCCAGAACCATCTTGGAGG AGCTCCTAGATCGGTGTAAGGAAGCTACGCGATCCAAGGGTGCCATGGAG TCTTCTCACACAGGTTCAAGCGAGTGGGCGGGGTTTCGAACCACTCCTGA ACTCCTTCAGGTAACGTGATCTAACGCTGTAGATAAGCTGTGCCACCTCT TGCGAAATTGTTGCGTACATAACCTAGGGTGTTCCTCACCCCCTACCACA TCTTGTTGCAAAGTCTTGATCCGCACCAAAAGCGCAGTAGTATCCGCCTT ATGTAGACAATTTGCTGGATATATCCCTTCTGCAATATCACTGAGATTCC TCTGCCTAACAACATCCTCACGAAGCAGGGAGTCAGTTCTACCTTGGCAC GAATCTTCTCCCGATCTCGGCGTTCAGATGGAACCGCCTTGTGCTGGTCT TGGCTGACACTCGCCCCTCAACCTTCGCGCATTGAGATCGCCAGTGACCC TCGGTTTTCTATCTTCGTCACTGTGTTACCAGCAGGAAATGGCAGTCCCC CTTCCCACCGCCCAATATTTGGATCTCAGATCATGTCCCGTGTTCTGTCC GGGGAGGTGGAGCAGGTGGGGGGGAAAAAACTGCCATTTTTTCTTTAGTT TTTTCTAGATATATTCGCATTTTGCCCCAGTCTACTGCTGCTGCTACTTC TTGTGAGGTTGGACGCTAAATTCGCGGTAGCGCTGCAGTTGTCATGTGCT TACTACTCTTGAATCTGGTTCTTCCTGTCCACCTTAAGTGAAGGGCCAAT AACTTGTGAAAAATGCTCAACTTACCAGACAATCATCATCCCTCTGGCCA TGGAACAGTAAATTTCAACCCTAGTGTGTTGCCTGCAGTACCCACATGCT CTAGGGTTCAACCCAATGCTGGCAACACTCTGATGTAACTAACTCCAGTA GATAGCACCATTTAGTGTGTCTGAAACCTATTCCCCTCCGCCACCCTCTG CACTTATTTCCCCCCCAACCATATCTCTGTGCTGAACGTCTGACCCCGTA CCAGCTCAAGTCCTCTTCCCCTTCCCCTGTACCCCTTTGGAGTGAAGGTG AAAGCCAATAGCCAGAGGATAATTGGTAGAAGTCATCACTCCACAGAGAC TCCTGTATGGTCTAGCTACGGTGGTGGAGGTGAGAAAATCAAGCTCTACT TGCAAATACCATTTACCGCCAGGATTACGTATCGCTGTAACTGTTTTTTT GCAATACTCTTGAAGGATATCTCTCTGGTCCACACCTTTTTTTTTTCAAA TCAGCTTACCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCC CCCCCCCCCACCCCCCTTTTTTTTTTCAAACCCCCTCCCCCCCCCCCCCC CCCCCCCCCCCACCACCAATTCCCTACACCCCTATCAGTACGTCGTTTGG TGAACGAAGGCTTTCAGCCTGCAGTGGTCCTAGAGGTTGTGTTCTATGAC TGGTCACGGGGGTCAGGCTACATTGGAGGTTACGCAGCAATGCCCAGCGG GTCTGGGAATGCAGAACGCCTATTGGACGGTCAGAACGAAGCCAGCGGTG GTTCTACTGGTACTGGTGAAAGTGAGCAAGGGAGGCTCTTGATCCTCAGT ACCAGCCCCTGTGACCCTCACCTTCTTCTTCGGGACGGGGATATCTATGA AGAGGAAGAGGAGGGGGAAGGCGGGGAGACAGGGGAGGATTTGATCCTCG TGAGGAGAGACGGA
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Coding sequence (CDS) from alignment at C-tenellus_contig8320:2183..4296+

>mRNA_C-tenellus_contig8320.3.1 ID=mRNA_C-tenellus_contig8320.3.1|Name=mRNA_C-tenellus_contig8320.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1101bp|location=Sequence derived from alignment at C-tenellus_contig8320:2183..4296+ (Choristocarpus tenellus KU2346)
ATGTACTGTGTAATCAGTGCGAGAGGATCATCCAGGAATCGCCAAACCGC
AGAGATCATGGGAATTTCGCTTGCGCTTGGGATATCTGTCTTCATCCTCG
CGCTCTGCCCTGGGGTAGGCTTTGCACCTCATGTGACCACGGGTACAGTC
ATCACTGCAGCCAAGGCGAGTCAGAAATTGCGAGCTGATCACTATGGTAG
ACAGCTTCTCAAGCATCAATGCCAGGAGTACACCGAGCGGTGGTTTCGCC
TTCGAGCCCATCCATCCACCGAATTGCCCAAGTCAAACCCAGATATGGAA
GCGAGTAAGGGGTTAAATGTCGATGGTGCCAGAACCATCTTGGAGGAGCT
CCTAGATCGGTGTAAGGAAGCTACGCGATCCAAGGGTGCCATGGAGTCTT
CTCACACAGGTTCAAGCGAGTGGGCGGGGTTTCGAACCACTCCTGAACTC
CTTCAGGGAGTCAGTTCTACCTTGGCACGAATCTTCTCCCGATCTCGGCG
TTCAGATGGAACCGCCTTGTGCTGGTCTTGGCTGACACTCGCCCCTCAAC
CTTCGCGCATTGAGATCGCCAGTGACCCTCGGTTTTCTATCTTCGTCACT
GTGTTACCAGCAGGAAATGGCAGTCCCCCTTCCCACCGCCCAATATTTGG
ATCTCAGATCATGTCCCGTGTTCTGTCCGGGGAGGTGGAGCAGGTGAAAG
CCAATAGCCAGAGGATAATTGGTAGAAGTCATCACTCCACAGAGACTCCT
GTATGGTCTAGCTACGGTGGTGGAGTACGTCGTTTGGTGAACGAAGGCTT
TCAGCCTGCAGTGGTCCTAGAGGTTGTGTTCTATGACTGGTCACGGGGGT
CAGGCTACATTGGAGGTTACGCAGCAATGCCCAGCGGGTCTGGGAATGCA
GAACGCCTATTGGACGGTCAGAACGAAGCCAGCGGTGGTTCTACTGGTAC
TGGTGAAAGTGAGCAAGGGAGGCTCTTGATCCTCAGTACCAGCCCCTGTG
ACCCTCACCTTCTTCTTCGGGACGGGGATATCTATGAAGAGGAAGAGGAG
GGGGAAGGCGGGGAGACAGGGGAGGATTTGATCCTCGTGAGGAGAGACGG
A
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