|
Homology
BLAST of mRNA_C-tenellus_contig8320.3.1 vs. uniprot
Match: A0A6H5LEA1_9PHAE (Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LEA1_9PHAE) HSP 1 Score: 298 bits (762), Expect = 9.250e-91 Identity = 167/296 (56.42%), Postives = 207/296 (69.93%), Query Frame = 1
Query: 310 AHPSTE-LPKSNPDMEASKGLNVDGARTILEELLDRCKEATRSKGAMESSHTGSSEWAGFRTTPELLQGVSSTLARIFSRSRRSDGTALCWSWLTLAPQPSRIEIAS--DPRFSIFVTVLPAGNGSPPSHRPIFGSQIMSRVLSGEVEQVKANSQRIIGRSHHSTETPVWSSYGGGVRRLVNEGFQPAVVLEVVFYDWSRGSGYIGGYAAM-PSGSGNAERLLD----GQNEASG-GSTGTGES---EQGRLLILS--TSPCDPHLLLRDGDIYEEEEEGEGGETGEDLILVRRDG 1155
AH + E +P S + +G T+L+ELL+RC EAT+S A ESSHTGSSEWAGF+T P LL+GV + L+R RSR SDG+AL WSWLTL+P+P R+ +A+ D R +++TVLPAGNG+PPSHRP++G I+SRVL+GEVEQVK+NS+R+IGRS HS ETPVWSS+GGG RRL+NE FQPAV+LEVV YDWSRGSGY G YAA S SG+AE + G+ EA+G G GES E G L I++ + PC P LL RDGD+YEE L LVR DG
Sbjct: 102 AHKTEEGVPSSTTTAGGRSVPDGEGELTLLDELLERCAEATKSDAAAESSHTGSSEWAGFKTAPALLEGVRAVLSRARQRSRHSDGSALAWSWLTLSPRPVRVAVATPEDGRVGVYLTVLPAGNGNPPSHRPMYGCHILSRVLAGEVEQVKSNSKRVIGRSTHSLETPVWSSFGGGARRLINESFQPAVILEVVMYDWSRGSGYSGSYAAPGTSSSGSAELRAEAEGVGRAEAAGVEGDGGGESSPAENGILPIVAMDSCPCPPALLFRDGDVYEEXXXXXXXXXX--LTLVRSDG 395
BLAST of mRNA_C-tenellus_contig8320.3.1 vs. uniprot
Match: A0A836CBN6_9STRA (Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN6_9STRA) HSP 1 Score: 155 bits (391), Expect = 7.510e-38 Identity = 100/257 (38.91%), Postives = 133/257 (51.75%), Query Frame = 1
Query: 391 ILEELLDRCKEATRSKGAMESSH--TGSSEWAGFRTTPELLQGVSSTLARIFSRSRRSDGTALCWSWLTLAPQPSRIEIASDPRFSIFVTVLPAGNGSPPSHRPIFGSQIMSRVLSGEVEQVKANSQRIIGRSHHSTETPVWSSYGGGVRRLVNEGFQPAVVLEVVFYDWSRGSGYIGGYAAMPSGSGNAERLLDGQNEASGGSTGTGESEQGRLLILSTSPCDPHLLLRDGDIYEEEEEGEGGETGEDLILVRRDG 1155
+ +LL C+ A E + +GSSEW+GF T LQ V +L + R G +L WSWL L+ P R+ + F + +TVLP G PP+HRP+ G+ ++S V G+VEQVKAN QRII R+ H+ ETP+W+S+GGGVRRL N A +LEV+FY RG Y G AER + G + LS PCDP +L R EEG G E GE L++ R+G
Sbjct: 98 VFHQLLQDCQTAADYAATAEPADAGSGSSEWSGFWTAEPKLQQVLDSLQQCSPAWRGGRGASLAWSWLGLSTMPLRVMLHQGGGFGVLLTVLPPG-AKPPAHRPMIGAHMLSIVCQGDVEQVKANGQRIINRTRHTPETPIWNSFGGGVRRLANMSVTTAYILEVLFYG-KRGPPE---YDTRAPDGGAAERNAEADEFILSGPRA--------MATLSAPPCDPEVLFRSVG-----EEG-GDEGGEVLVIRGREG 335
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 0 |
Start | 1 |
Seed ortholog | 2880.D8LSL6 |
PFAMs | AAA,CDC48_N |
Model size | 1156 |
Max annot lvl | 2759|Eukaryota |
KEGG ko | ko:K06027 |
KEGG TC | 1.F.1.1 |
KEGG Pathway | ko04138,ko04721,ko04727,ko04962,map04138,map04721,map04727,map04962 |
Hectar predicted targeting category | signal anchor |
GOs | GO:0000166,GO:0000502,GO:0000731,GO:0002020,GO:0002082,GO:0002790,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006897,GO:0006909,GO:0006914,GO:0006919,GO:0006928,GO:0006950,GO:0006974,GO:0007034,GO:0007041,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009306,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031593,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033554,GO:0034098,GO:0034214,GO:0034404,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036435,GO:0036503,GO:0036513,GO:0040011,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045732,GO:0045838,GO:0045862,GO:0045935,GO:0045937,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0051788,GO:0051881,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0060828,GO:0061134,GO:0061136,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098657,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1902494,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905368,GO:1905369,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000116,GO:2000152,GO:2000158,GO:2001056,GO:2001169,GO:2001171 |
Exons | 4 |
Evalue | 1.38e-96 |
EggNOG OGs | COG0464@1|root,KOG0741@2759|Eukaryota |
Ec32 ortholog description | ATPase, AAA-type, core |
Ec32 ortholog | Ec-09_002110.1 |
EC | 3.6.4.6 |
Description | SNARE complex disassembly |
Cds size | 1101 |
COG category | O |
BRITE | ko00000,ko00001,ko01000,ko04131 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680790098.1240902-UTR-C-tenellus_contig8320:2182..2236 | 1680790098.1240902-UTR-C-tenellus_contig8320:2182..2236 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig8320 2183..2236 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680790098.1394117-CDS-C-tenellus_contig8320:2236..2692 | 1680790098.1394117-CDS-C-tenellus_contig8320:2236..2692 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig8320 2237..2692 + |
1680790098.1488955-CDS-C-tenellus_contig8320:2910..3147 | 1680790098.1488955-CDS-C-tenellus_contig8320:2910..3147 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig8320 2911..3147 + |
1680790098.1598186-CDS-C-tenellus_contig8320:3629..3711 | 1680790098.1598186-CDS-C-tenellus_contig8320:3629..3711 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig8320 3630..3711 + |
1680790098.17255-CDS-C-tenellus_contig8320:3970..4296 | 1680790098.17255-CDS-C-tenellus_contig8320:3970..4296 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig8320 3971..4296 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig8320.3.1 >prot_C-tenellus_contig8320.3.1 ID=prot_C-tenellus_contig8320.3.1|Name=mRNA_C-tenellus_contig8320.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=367bp
MYCVISARGSSRNRQTAEIMGISLALGISVFILALCPGVGFAPHVTTGTV ITAAKASQKLRADHYGRQLLKHQCQEYTERWFRLRAHPSTELPKSNPDME ASKGLNVDGARTILEELLDRCKEATRSKGAMESSHTGSSEWAGFRTTPEL LQGVSSTLARIFSRSRRSDGTALCWSWLTLAPQPSRIEIASDPRFSIFVT VLPAGNGSPPSHRPIFGSQIMSRVLSGEVEQVKANSQRIIGRSHHSTETP VWSSYGGGVRRLVNEGFQPAVVLEVVFYDWSRGSGYIGGYAAMPSGSGNA ERLLDGQNEASGGSTGTGESEQGRLLILSTSPCDPHLLLRDGDIYEEEEE GEGGETGEDLILVRRDG back to topmRNA from alignment at C-tenellus_contig8320:2183..4296+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-tenellus_contig8320.3.1 ID=mRNA_C-tenellus_contig8320.3.1|Name=mRNA_C-tenellus_contig8320.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2114bp|location=Sequence derived from alignment at C-tenellus_contig8320:2183..4296+ (Choristocarpus tenellus KU2346) GAGTACAGTATTGTTACAAATTGAACAACATAATAGGCTTAGTACAGGCA
ACGCATGTACTGTGTAATCAGTGCGAGAGGATCATCCAGGAATCGCCAAA
CCGCAGAGATCATGGGAATTTCGCTTGCGCTTGGGATATCTGTCTTCATC
CTCGCGCTCTGCCCTGGGGTAGGCTTTGCACCTCATGTGACCACGGGTAC
AGTCATCACTGCAGCCAAGGCGAGTCAGAAATTGCGAGCTGATCACTATG
GTAGACAGCTTCTCAAGCATCAATGCCAGGAGTACACCGAGCGGTGGTTT
CGCCTTCGAGCCCATCCATCCACCGAATTGCCCAAGTCAAACCCAGATAT
GGAAGCGAGTAAGGGGTTAAATGTCGATGGTGCCAGAACCATCTTGGAGG
AGCTCCTAGATCGGTGTAAGGAAGCTACGCGATCCAAGGGTGCCATGGAG
TCTTCTCACACAGGTTCAAGCGAGTGGGCGGGGTTTCGAACCACTCCTGA
ACTCCTTCAGGTAACGTGATCTAACGCTGTAGATAAGCTGTGCCACCTCT
TGCGAAATTGTTGCGTACATAACCTAGGGTGTTCCTCACCCCCTACCACA
TCTTGTTGCAAAGTCTTGATCCGCACCAAAAGCGCAGTAGTATCCGCCTT
ATGTAGACAATTTGCTGGATATATCCCTTCTGCAATATCACTGAGATTCC
TCTGCCTAACAACATCCTCACGAAGCAGGGAGTCAGTTCTACCTTGGCAC
GAATCTTCTCCCGATCTCGGCGTTCAGATGGAACCGCCTTGTGCTGGTCT
TGGCTGACACTCGCCCCTCAACCTTCGCGCATTGAGATCGCCAGTGACCC
TCGGTTTTCTATCTTCGTCACTGTGTTACCAGCAGGAAATGGCAGTCCCC
CTTCCCACCGCCCAATATTTGGATCTCAGATCATGTCCCGTGTTCTGTCC
GGGGAGGTGGAGCAGGTGGGGGGGAAAAAACTGCCATTTTTTCTTTAGTT
TTTTCTAGATATATTCGCATTTTGCCCCAGTCTACTGCTGCTGCTACTTC
TTGTGAGGTTGGACGCTAAATTCGCGGTAGCGCTGCAGTTGTCATGTGCT
TACTACTCTTGAATCTGGTTCTTCCTGTCCACCTTAAGTGAAGGGCCAAT
AACTTGTGAAAAATGCTCAACTTACCAGACAATCATCATCCCTCTGGCCA
TGGAACAGTAAATTTCAACCCTAGTGTGTTGCCTGCAGTACCCACATGCT
CTAGGGTTCAACCCAATGCTGGCAACACTCTGATGTAACTAACTCCAGTA
GATAGCACCATTTAGTGTGTCTGAAACCTATTCCCCTCCGCCACCCTCTG
CACTTATTTCCCCCCCAACCATATCTCTGTGCTGAACGTCTGACCCCGTA
CCAGCTCAAGTCCTCTTCCCCTTCCCCTGTACCCCTTTGGAGTGAAGGTG
AAAGCCAATAGCCAGAGGATAATTGGTAGAAGTCATCACTCCACAGAGAC
TCCTGTATGGTCTAGCTACGGTGGTGGAGGTGAGAAAATCAAGCTCTACT
TGCAAATACCATTTACCGCCAGGATTACGTATCGCTGTAACTGTTTTTTT
GCAATACTCTTGAAGGATATCTCTCTGGTCCACACCTTTTTTTTTTCAAA
TCAGCTTACCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCC
CCCCCCCCCACCCCCCTTTTTTTTTTCAAACCCCCTCCCCCCCCCCCCCC
CCCCCCCCCCCACCACCAATTCCCTACACCCCTATCAGTACGTCGTTTGG
TGAACGAAGGCTTTCAGCCTGCAGTGGTCCTAGAGGTTGTGTTCTATGAC
TGGTCACGGGGGTCAGGCTACATTGGAGGTTACGCAGCAATGCCCAGCGG
GTCTGGGAATGCAGAACGCCTATTGGACGGTCAGAACGAAGCCAGCGGTG
GTTCTACTGGTACTGGTGAAAGTGAGCAAGGGAGGCTCTTGATCCTCAGT
ACCAGCCCCTGTGACCCTCACCTTCTTCTTCGGGACGGGGATATCTATGA
AGAGGAAGAGGAGGGGGAAGGCGGGGAGACAGGGGAGGATTTGATCCTCG
TGAGGAGAGACGGA back to topCoding sequence (CDS) from alignment at C-tenellus_contig8320:2183..4296+ >mRNA_C-tenellus_contig8320.3.1 ID=mRNA_C-tenellus_contig8320.3.1|Name=mRNA_C-tenellus_contig8320.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1101bp|location=Sequence derived from alignment at C-tenellus_contig8320:2183..4296+ (Choristocarpus tenellus KU2346) ATGTACTGTGTAATCAGTGCGAGAGGATCATCCAGGAATCGCCAAACCGC AGAGATCATGGGAATTTCGCTTGCGCTTGGGATATCTGTCTTCATCCTCG CGCTCTGCCCTGGGGTAGGCTTTGCACCTCATGTGACCACGGGTACAGTC ATCACTGCAGCCAAGGCGAGTCAGAAATTGCGAGCTGATCACTATGGTAG ACAGCTTCTCAAGCATCAATGCCAGGAGTACACCGAGCGGTGGTTTCGCC TTCGAGCCCATCCATCCACCGAATTGCCCAAGTCAAACCCAGATATGGAA GCGAGTAAGGGGTTAAATGTCGATGGTGCCAGAACCATCTTGGAGGAGCT CCTAGATCGGTGTAAGGAAGCTACGCGATCCAAGGGTGCCATGGAGTCTT CTCACACAGGTTCAAGCGAGTGGGCGGGGTTTCGAACCACTCCTGAACTC CTTCAGGGAGTCAGTTCTACCTTGGCACGAATCTTCTCCCGATCTCGGCG TTCAGATGGAACCGCCTTGTGCTGGTCTTGGCTGACACTCGCCCCTCAAC CTTCGCGCATTGAGATCGCCAGTGACCCTCGGTTTTCTATCTTCGTCACT GTGTTACCAGCAGGAAATGGCAGTCCCCCTTCCCACCGCCCAATATTTGG ATCTCAGATCATGTCCCGTGTTCTGTCCGGGGAGGTGGAGCAGGTGAAAG CCAATAGCCAGAGGATAATTGGTAGAAGTCATCACTCCACAGAGACTCCT GTATGGTCTAGCTACGGTGGTGGAGTACGTCGTTTGGTGAACGAAGGCTT TCAGCCTGCAGTGGTCCTAGAGGTTGTGTTCTATGACTGGTCACGGGGGT CAGGCTACATTGGAGGTTACGCAGCAATGCCCAGCGGGTCTGGGAATGCA GAACGCCTATTGGACGGTCAGAACGAAGCCAGCGGTGGTTCTACTGGTAC TGGTGAAAGTGAGCAAGGGAGGCTCTTGATCCTCAGTACCAGCCCCTGTG ACCCTCACCTTCTTCTTCGGGACGGGGATATCTATGAAGAGGAAGAGGAG GGGGAAGGCGGGGAGACAGGGGAGGATTTGATCCTCGTGAGGAGAGACGG A back to top
|