mRNA_C-tenellus_contig8320.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8320.2.1
Unique NamemRNA_C-tenellus_contig8320.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8320.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8320contigC-tenellus_contig8320:1473..2051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size532
Hectar predicted targeting categorysignal peptide
Exons2
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790098.00404-UTR-C-tenellus_contig8320:1472..14861680790098.00404-UTR-C-tenellus_contig8320:1472..1486Choristocarpus tenellus KU2346UTRC-tenellus_contig8320 1473..1486 -
1680790098.0378287-UTR-C-tenellus_contig8320:1896..20511680790098.0378287-UTR-C-tenellus_contig8320:1896..2051Choristocarpus tenellus KU2346UTRC-tenellus_contig8320 1897..2051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790098.0142322-CDS-C-tenellus_contig8320:1486..15331680790098.0142322-CDS-C-tenellus_contig8320:1486..1533Choristocarpus tenellus KU2346CDSC-tenellus_contig8320 1487..1533 -
1680790098.0265064-CDS-C-tenellus_contig8320:1580..18961680790098.0265064-CDS-C-tenellus_contig8320:1580..1896Choristocarpus tenellus KU2346CDSC-tenellus_contig8320 1581..1896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8320.2.1prot_C-tenellus_contig8320.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8320 1487..1896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8320.2.1

>prot_C-tenellus_contig8320.2.1 ID=prot_C-tenellus_contig8320.2.1|Name=mRNA_C-tenellus_contig8320.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=121bp
MNTQSMRLAVALVLCFAVRSFAFLFRGPRVAPKVHVLTNRRSFPSMARRR
DICFPLMAEPDVTESTEQAEVDGAEVEVPTEEETVETGEDGDGEEVNGGE
DEDKESRGGERGGSGSIGRG*
back to top

mRNA from alignment at C-tenellus_contig8320:1473..2051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8320.2.1 ID=mRNA_C-tenellus_contig8320.2.1|Name=mRNA_C-tenellus_contig8320.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=579bp|location=Sequence derived from alignment at C-tenellus_contig8320:1473..2051- (Choristocarpus tenellus KU2346)
CAACGATACACGCGCAGACTGTACACTCTTTGAACGTGCAGAGGAGCACA
GAACTGTTGAGAAGGACTACACTGAGATAGAGAGTTTGGTACTTGCTATA
TATTGCGTCCTCTCCTGCCCAAAAGGGGCTAAGCCAGCAAAATAACCTTG
AAAATATGAACACACAGAGCATGCGGCTGGCAGTCGCCCTTGTCCTGTGC
TTTGCGGTCAGGAGCTTTGCTTTTCTGTTCCGAGGACCGCGGGTAGCCCC
GAAGGTCCATGTGTTGACCAATCGTCGATCTTTTCCGTCCATGGCAAGGC
GACGGGATATTTGTTTCCCTTTGATGGCGGAACCAGATGTGACAGAGTCA
ACAGAGCAAGCCGAAGTTGATGGGGCTGAAGTTGAAGTGCCCACGGAAGA
GGAAACTGTGGAGACGGGAGAGGATGGGGACGGTGAAGAAGTTAATGGTG
GAGAGGATGAGGACAAGGAGAGTGAAGAACAAGAGGCGGTAGAGGGTGGA
GAGGGTGAGGAAAAGGAGGTCGTGGAGGAGAAAGAGGAGGAAGTGGATCC
ATTGGCAGAGGTTAAGGGGATCATTAAGG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig8320:1473..2051-

>mRNA_C-tenellus_contig8320.2.1 ID=mRNA_C-tenellus_contig8320.2.1|Name=mRNA_C-tenellus_contig8320.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=363bp|location=Sequence derived from alignment at C-tenellus_contig8320:1473..2051- (Choristocarpus tenellus KU2346)
ATGAACACACAGAGCATGCGGCTGGCAGTCGCCCTTGTCCTGTGCTTTGC
GGTCAGGAGCTTTGCTTTTCTGTTCCGAGGACCGCGGGTAGCCCCGAAGG
TCCATGTGTTGACCAATCGTCGATCTTTTCCGTCCATGGCAAGGCGACGG
GATATTTGTTTCCCTTTGATGGCGGAACCAGATGTGACAGAGTCAACAGA
GCAAGCCGAAGTTGATGGGGCTGAAGTTGAAGTGCCCACGGAAGAGGAAA
CTGTGGAGACGGGAGAGGATGGGGACGGTGAAGAAGTTAATGGTGGAGAG
GATGAGGACAAGGAGAGTCGTGGAGGAGAAAGAGGAGGAAGTGGATCCAT
TGGCAGAGGTTAA
back to top