mRNA_C-tenellus_contig8319.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8319.5.1
Unique NamemRNA_C-tenellus_contig8319.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8319.5.1 vs. uniprot
Match: D7G3W7_ECTSI (Vps54_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W7_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.780e-23
Identity = 59/112 (52.68%), Postives = 77/112 (68.75%), Query Frame = 2 
Query:  110 DKDVARAAVTCQIAAVVHDNYTDLVGGMRKVQAVDLDLARAAVHVTNARRGLKRGLERGPCAILAMLASEERRARLGAAKDALELTLGFLVEEERVKEDLAVGKFTEAVSKA 445
            +KDVAR AVT QIA++V +NY  LVGGMR+VQAVDLDLARA V ++N RRGL+R L R    +L ++ +  RR RL   +      L  + EE RV+ DLA G+FT+AV+ A
Sbjct:   50 EKDVARLAVTTQIASMVQENYAALVGGMRQVQAVDLDLARAGVQISNGRRGLQRSLARSTGPVLRLIETGRRRDRLRLVEAVTASCLKAVAEEGRVEGDLAAGRFTQAVATA 161
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8319.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3W7_ECTSI1.780e-2352.68Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8319contigC-tenellus_contig8319:4557..6342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000017733
PFAMsDUF2451,Vps54_N
Model size661
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.27e-08
EggNOG OGsKOG2939@1|root,KOG2939@2759|Eukaryota,1MAZU@121069|Pythiales
DescriptionSource PGD
Cds size441
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790097.7954018-UTR-C-tenellus_contig8319:4556..45811680790097.7954018-UTR-C-tenellus_contig8319:4556..4581Choristocarpus tenellus KU2346UTRC-tenellus_contig8319 4557..4581 +
1680790097.82465-UTR-C-tenellus_contig8319:6147..63421680790097.82465-UTR-C-tenellus_contig8319:6147..6342Choristocarpus tenellus KU2346UTRC-tenellus_contig8319 6148..6342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790097.8059363-CDS-C-tenellus_contig8319:4581..46711680790097.8059363-CDS-C-tenellus_contig8319:4581..4671Choristocarpus tenellus KU2346CDSC-tenellus_contig8319 4582..4671 +
1680790097.8153057-CDS-C-tenellus_contig8319:5796..61471680790097.8153057-CDS-C-tenellus_contig8319:5796..6147Choristocarpus tenellus KU2346CDSC-tenellus_contig8319 5797..6147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8319.5.1prot_C-tenellus_contig8319.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8319 4582..6147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8319.5.1

>prot_C-tenellus_contig8319.5.1 ID=prot_C-tenellus_contig8319.5.1|Name=mRNA_C-tenellus_contig8319.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=147bp
MFGFGRGDTDEGEGVDGSYDEYLERELRDKDVARAAVTCQIAAVVHDNYT
DLVGGMRKVQAVDLDLARAAVHVTNARRGLKRGLERGPCAILAMLASEER
RARLGAAKDALELTLGFLVEEERVKEDLAVGKFTEAVSKAGEKRDE*
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mRNA from alignment at C-tenellus_contig8319:4557..6342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8319.5.1 ID=mRNA_C-tenellus_contig8319.5.1|Name=mRNA_C-tenellus_contig8319.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1786bp|location=Sequence derived from alignment at C-tenellus_contig8319:4557..6342+ (Choristocarpus tenellus KU2346)
TATAGGCTTCAAAGCAAGTGGAGGCATGTTTGGATTTGGTCGGGGAGACA
CGGATGAGGGGGAGGGGGTCGATGGAAGTTATGATGAGTACCTGGAAAGG
GAACTCCGAGATAAGGTAGAGGGTGGTGGTTGAAGCAGGGGGTGGGGGTG
CAAGGGAAGGGGGACAAGGGGCCTAATATACATATTCTGTCTAATTTGGG
GTTGGGTATTTTTGACTTGTTGGGAGTGGTTGTGTACTGAATTGTATTGT
AGAATTGTTTACTCCAGAGTGCTACAGACTACTGATGGAAATTTGAGTAA
ACTTCGCTTTTTCTGGGACCCTCTCAGATGCACATCAAAGTTTTTGGGGC
GTTTAAGAATAGAAGGAGATTTGTTTGTTGCAAGAGTCGATGCGATATTT
ATATGGCGGTAGCAATAGTGTTTAGGCTTGTTCCTAAAATAATTGTGTTT
GCGATGCCTCCCGTGTATAGCATGCTACATATGTGTTGACACAGTGCCTT
CAATTATAAATTGTTTTGTACAAAGGTGTGCAGTATCAAATATGTAATAC
ATCATATTTAACCACCTTCAGTAAACCATGGGGTAGCTGAGACCTTGAGT
GTGCCTTTGAGTGTGTGATGATGCTTCTACTGGGCTCATTGCTGTCTCCT
GCTTGTTCCCCCACTTCTGCTCCTGAACAACGGCAGACCCTGCTAGCTTA
AGACTTCACAAATATTCTATGCCTGCTATGATATTCCTCCTCCTCCCCCC
CCCCCCCCCCCCCCCTCCCAACCCACACACCCACCCCCACAACACACAAT
ACCCCACCACAACACCTCCCACCAATCAAAACAAAAAANNNNNNNNNNTA
AGACTTCACAATCATTCTATGCCTGCTATGATATTCCTCCCCCCCCCCCC
CCCCCCCTACCCTTTTCAAGCCTATACCCTTCCTCTTACCTGTTCCATTT
CCCCCCTTCAATTTTGCCCACTGTGTGTGAACCACTATCAAAACAAGTTA
CTCCTTCAACCATCCCCCTTCCTGAGCCCTTTGTCACTTACCTTGCAATC
TCTCTTCACAATGCAAACTCAAAACCTGGAGTCCTTAAACCCCCCTCCCC
CCTCCCTCCTGCCCTCCTGCCCTCCTGCCCTCCTGCCCTCCTGCCCTCCT
GCCCTCCTGCCCTCCTGCCCTCCTGCCCTCCTGCCCTCCCCCCGCATCTT
TCGTCATATTCCTACTAACCCTAACCCTATCTGAAAAAAGGATGTGGCAC
GAGCAGCGGTAACATGTCAGATCGCTGCAGTTGTCCATGATAATTATACC
GATCTCGTTGGGGGCATGCGTAAGGTTCAGGCTGTGGATCTTGACCTCGC
CCGTGCTGCAGTCCATGTGACCAATGCTCGCCGGGGACTGAAGAGGGGAC
TTGAGAGGGGTCCCTGTGCAATTCTGGCCATGCTAGCCAGCGAGGAGAGG
AGGGCTCGATTGGGGGCAGCCAAGGATGCCCTGGAGCTTACTCTGGGTTT
CCTGGTGGAGGAGGAAAGGGTCAAGGAAGACTTAGCGGTTGGGAAGTTCA
CCGAGGCTGTTTCTAAGGCTGGTGAGAAAAGGGATGAGTAAGGGGTGTGT
GTTGTGGCAAAGAGTGGCAAAGAGTGAGGGGGGTGAGGGAGGCTTGATGG
CGATGGCATTGACTTGGAGGTATTTTATTTGCAGGTTGTTTTTAAAATGT
AGATGGTGCGTTTTTGAGTTGCTGACTCCCTGTTACCTGGGGTCAAAACG
GAGCTAACTGTGGGAGGGGGCTACGAATAGTAGAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig8319:4557..6342+

>mRNA_C-tenellus_contig8319.5.1 ID=mRNA_C-tenellus_contig8319.5.1|Name=mRNA_C-tenellus_contig8319.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=441bp|location=Sequence derived from alignment at C-tenellus_contig8319:4557..6342+ (Choristocarpus tenellus KU2346)
ATGTTTGGATTTGGTCGGGGAGACACGGATGAGGGGGAGGGGGTCGATGG
AAGTTATGATGAGTACCTGGAAAGGGAACTCCGAGATAAGGATGTGGCAC
GAGCAGCGGTAACATGTCAGATCGCTGCAGTTGTCCATGATAATTATACC
GATCTCGTTGGGGGCATGCGTAAGGTTCAGGCTGTGGATCTTGACCTCGC
CCGTGCTGCAGTCCATGTGACCAATGCTCGCCGGGGACTGAAGAGGGGAC
TTGAGAGGGGTCCCTGTGCAATTCTGGCCATGCTAGCCAGCGAGGAGAGG
AGGGCTCGATTGGGGGCAGCCAAGGATGCCCTGGAGCTTACTCTGGGTTT
CCTGGTGGAGGAGGAAAGGGTCAAGGAAGACTTAGCGGTTGGGAAGTTCA
CCGAGGCTGTTTCTAAGGCTGGTGAGAAAAGGGATGAGTAA
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