mRNA_C-tenellus_contig8319.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8319.3.1
Unique NamemRNA_C-tenellus_contig8319.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8319.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8319contigC-tenellus_contig8319:2163..4536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size551
Hectar predicted targeting categoryother localisation
Exons4
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790097.7282307-CDS-C-tenellus_contig8319:2162..22041680790097.7282307-CDS-C-tenellus_contig8319:2162..2204Choristocarpus tenellus KU2346CDSC-tenellus_contig8319 2163..2204 +
1680790097.7378638-CDS-C-tenellus_contig8319:2400..27511680790097.7378638-CDS-C-tenellus_contig8319:2400..2751Choristocarpus tenellus KU2346CDSC-tenellus_contig8319 2401..2751 +
1680790097.7566953-CDS-C-tenellus_contig8319:3472..35481680790097.7566953-CDS-C-tenellus_contig8319:3472..3548Choristocarpus tenellus KU2346CDSC-tenellus_contig8319 3473..3548 +
1680790097.767458-CDS-C-tenellus_contig8319:4456..45361680790097.767458-CDS-C-tenellus_contig8319:4456..4536Choristocarpus tenellus KU2346CDSC-tenellus_contig8319 4457..4536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8319.3.1prot_C-tenellus_contig8319.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8319 2163..4536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8319.3.1

>prot_C-tenellus_contig8319.3.1 ID=prot_C-tenellus_contig8319.3.1|Name=mRNA_C-tenellus_contig8319.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=183bp
KPSSKLETEFDFLKESFLGSFGRTDLKTIDDGLRTLSFPSDTHVGLWSFS
DEEDEEEDDSDENDESEHHYVGSGEAATLSPGPVAAAVRRSAAAEAAVVR
LGKVGQQCKAPLEQLSLARAQFSADEEDDNEVPWAVIKLRSEQEIFRTLD
PRFFVEDFDPIMALLEELPDYGPVANQGSKGVG
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mRNA from alignment at C-tenellus_contig8319:2163..4536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8319.3.1 ID=mRNA_C-tenellus_contig8319.3.1|Name=mRNA_C-tenellus_contig8319.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2374bp|location=Sequence derived from alignment at C-tenellus_contig8319:2163..4536+ (Choristocarpus tenellus KU2346)
AAGCCTTCTTCAAAACTGGAAACAGAGTTCGATTTTCTAAAGGTCATGTG
GAAGATTTGTGTTGTCCCCAGTCCTGCTTGCCTATGTGTAGTCGCCCATA
CATTCCCAATGATGGAAGCTATATATTTCACTCTATCTAAGAGGTTGTTG
ATAAGACGTTTGGAATCTTCTACTCATTGCTCAAATGAGAAGACAATCCG
CCAACAACAAGGATGGAATCCTTGCACTCAAATGGCAGGAATCGTTCCTA
GGGAGCTTCGGGCGCACTGATCTCAAGACCATCGACGATGGGCTTCGCAC
CCTCAGTTTTCCATCGGACACTCACGTAGGTCTCTGGAGCTTTAGTGATG
AGGAAGATGAAGAGGAGGATGACTCTGATGAGAACGATGAGTCCGAGCAT
CATTATGTAGGGTCAGGGGAGGCGGCAACTTTGTCTCCAGGTCCAGTGGC
AGCAGCAGTGAGACGTTCGGCTGCCGCGGAAGCTGCAGTGGTGAGACTGG
GGAAGGTGGGTCAGCAGTGTAAGGCACCTCTCGAGCAGCTCAGCCTCGCT
CGCGCCCAGTTCAGTGCAGACGAGGAAGATGACAACGAGGCAAGCACCGC
ATCCCTACCCCTCACTTGCCCTCCTTATATGGACTATTAAGTGGTTGCAC
TGTGTCAATGGAAGTGTATCCCTGGTGATTAGTGTGGCAATTGAACCCAT
GCCATTCACGAATTGAATTATCTACCAGTGGCATAGTGACTTTGTGACAC
TATCAAGTAGTCTCAAAAGCGCGCATGCGACTCATGTAATATCTTCGCCT
CTTTTCAAATTCGTGTTAAATTAGGTGCTTGGATTTATTGCTTCAAGAGA
CTTCATTGACAAATTTCCTCGTTTTCACTTCCTGATGATCACATCTATCC
TGTTCGCAGCATCGATCCCATGGCCCCAGACTACATCACCATATCCGTGT
ATCCTGTATCTTGCTCAGCAGCCTTAAACAATGATACTACCTTGTCCAGT
TTCCTACATCTTGGCCCACTCCTGTGTTTAGAGTTAATTTATGCTTGCAA
CCCTCAATAGACTCAGTTCTCCTATTCCCCACCCCCCACAACTTTGTGTA
GTATTATTTCGACCATGTTTTTGTCCTTGTCTTCTGGTCACTTTTTTTCC
CAATCCCTGCCCAACAGACATTGGAGCAATGTGCTGCACAGCTGAGGATG
ATCAAAGACTATCTATATAGAAAGACGTATTGGGAATTTAATTCTACCTG
CTCTCCCTTCCCACCAACTGAAAGTGCCATGTGCCTTGCACCCCATTGAA
TATGCCCCAGGTTCCGTGGGCTGTGATCAAACTAAGATCAGAGCAGGAAA
TATTCCGGACGCTGGACCCACGCTTTTTTGTTGAGGGTGAGTGTTGAATT
GTGTTGTGCTGTGGTTTGCACAAACATGGCTGTACTTCGTGTGGTGCAGT
AGACAGTGGATGATGGTAGCTGCATGGCACGTCTATGCCCTCTTACCCTC
TCCAGTGTGGTGGTCCTTGCATGTGTTTATGTTTTTTATTTAGTTGGCAC
TCCATCAGTTGCAGACAGTAGCATCCTTTCCACTGCACAGATGTTTGTAG
CGGAGCCAGTTTTTAAATTACTTCCCACACCCATCTAACTTGAGGGTACC
TTTTTTCAGACATTGCCACTTGTGCTGCTGCTTTAGGGGTAAGCTGCATA
TCTCATTTTGCACACATGTGCATGCTCCACCCATGAAACAAAGTCCTAGA
CATGGGGTGTTGGTGGGATGTCAATAAACTGACTATCCTTAGACAGTTCA
GAAATCATGCTGCCAGGGTTTCTTATGTACATGCTGGTCATCCACACAGT
GTGGGTGGGAGCTACTTCTGTTCTTGTGATGTAAGTACTCCCTTGCTTTG
CTCACCGGTTATGCATGTTGAAAGTTTTTTTTAGTGCATCTGGTTTGTTG
CACGTATTGTTTCTGCCTCTGTCCTGTTGCTTGTGCACTACCACCTGCTT
GCTAGTCTTGTTGCCTGAATCACCTGCTGAGTCATTCTCAGTGATGCCTT
TACTCAAAACTGCTATCAGGTGGCTTGATACTTGTAGCATACATGGATGG
GCGGGTTCCTTAGTAGCACTCGGAAGATAATGCAAATGCTGTAAAGTTTG
ATTTGCTGATGTTACTCCCCCTATGCCCTCCCCCAACCCTCTCAACTTCC
TTTTTTATGACCATATATATTTTAGACGCCCTCCCCCTGTACCCCCCCCA
ATCCACTCCATTTATTTTTTCTACACTCCCCTGCCCACTTGTAGATTTTG
ATCCCATCATGGCCTTGCTAGAGGAGCTTCCAGACTATGGACCAGTGGCC
AACCAGGGCTCCAAGGGGGTTGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig8319:2163..4536+

>mRNA_C-tenellus_contig8319.3.1 ID=mRNA_C-tenellus_contig8319.3.1|Name=mRNA_C-tenellus_contig8319.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=549bp|location=Sequence derived from alignment at C-tenellus_contig8319:2163..4536+ (Choristocarpus tenellus KU2346)
AAGCCTTCTTCAAAACTGGAAACAGAGTTCGATTTTCTAAAGGAATCGTT
CCTAGGGAGCTTCGGGCGCACTGATCTCAAGACCATCGACGATGGGCTTC
GCACCCTCAGTTTTCCATCGGACACTCACGTAGGTCTCTGGAGCTTTAGT
GATGAGGAAGATGAAGAGGAGGATGACTCTGATGAGAACGATGAGTCCGA
GCATCATTATGTAGGGTCAGGGGAGGCGGCAACTTTGTCTCCAGGTCCAG
TGGCAGCAGCAGTGAGACGTTCGGCTGCCGCGGAAGCTGCAGTGGTGAGA
CTGGGGAAGGTGGGTCAGCAGTGTAAGGCACCTCTCGAGCAGCTCAGCCT
CGCTCGCGCCCAGTTCAGTGCAGACGAGGAAGATGACAACGAGGTTCCGT
GGGCTGTGATCAAACTAAGATCAGAGCAGGAAATATTCCGGACGCTGGAC
CCACGCTTTTTTGTTGAGGATTTTGATCCCATCATGGCCTTGCTAGAGGA
GCTTCCAGACTATGGACCAGTGGCCAACCAGGGCTCCAAGGGGGTTGGG
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