mRNA_C-tenellus_contig83.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig83.3.1
Unique NamemRNA_C-tenellus_contig83.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig83.3.1 vs. uniprot
Match: A0A812IAZ3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812IAZ3_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 1.500e-7
Identity = 47/152 (30.92%), Postives = 68/152 (44.74%), Query Frame = 1 
Query:    1 LGAPVGTDDFIRAHMAEVIESSGTRALATHLSEMEDKQVAWLLNSWSLSSRLGYLVRVTPPHLARSTMEQADNTSLWTLERIMEIADATEGTDFFEGGCNSRSLRLETHQQVQAQMPTSAGGLGLSSMKHRQHAAFVGSLVATLPTLLARQQ 456
            LGAP+GT +F+ AH+  ++           L  ++D QVAWLL S   + R  Y++R  PP L R+   + D      L+ I+  ADA  G              L      +AQ+P   GGLGL S      AA+  S    +  +L R +
Sbjct:  995 LGAPIGTPEFVAAHLCALLARHA--GFLNALPGLQDTQVAWLLLSHCAAPRAQYVLRTLPPPLTRAFAARHDAMVSSCLDTILS-ADAAVG--------------LPDLAVARAQLPLRHGGLGLRSAARHAPAAYWASWADAIRPVLHRDR 1129
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig83.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A812IAZ3_9DINO1.500e-730.92Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig83contigC-tenellus_contig83:268..978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size712
Hectar predicted targeting categoryother localisation
Exons1
Cds size711
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790095.1194577-CDS-C-tenellus_contig83:267..9781680790095.1194577-CDS-C-tenellus_contig83:267..978Choristocarpus tenellus KU2346CDSC-tenellus_contig83 268..978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig83.3.1prot_C-tenellus_contig83.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig83 268..978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig83.3.1

>prot_C-tenellus_contig83.3.1 ID=prot_C-tenellus_contig83.3.1|Name=mRNA_C-tenellus_contig83.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=237bp
LGAPVGTDDFIRAHMAEVIESSGTRALATHLSEMEDKQVAWLLNSWSLSS
RLGYLVRVTPPHLARSTMEQADNTSLWTLERIMEIADATEGTDFFEGGCN
SRSLRLETHQQVQAQMPTSAGGLGLSSMKHRQHAAFVGSLVATLPTLLAR
QQGPHGESFSQAVRTSPTIKALGVSIHTLLSTGVPLEDLTEIIGQDWVTW
GGTAPPAPTPEVHILAAHDARITRRAQHEITRLLNRI
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mRNA from alignment at C-tenellus_contig83:268..978-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig83.3.1 ID=mRNA_C-tenellus_contig83.3.1|Name=mRNA_C-tenellus_contig83.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=711bp|location=Sequence derived from alignment at C-tenellus_contig83:268..978- (Choristocarpus tenellus KU2346)
CTAGGGGCTCCAGTAGGAACAGATGATTTCATTCGAGCTCACATGGCGGA
GGTGATAGAGAGCTCTGGGACACGAGCTTTAGCTACACACCTCAGCGAGA
TGGAGGACAAGCAGGTGGCCTGGCTCCTCAACTCCTGGTCCCTCTCCTCT
AGGCTAGGCTATCTGGTGAGGGTCACTCCCCCTCACCTGGCACGCTCCAC
CATGGAGCAAGCGGACAACACCTCCCTGTGGACACTAGAGAGGATAATGG
AGATAGCTGATGCAACAGAGGGGACAGACTTCTTCGAGGGAGGGTGCAAC
AGTAGGTCTCTCCGCCTAGAGACCCACCAACAAGTACAGGCACAGATGCC
TACAAGTGCGGGGGGTCTAGGCCTCTCTTCCATGAAACACCGCCAGCATG
CGGCTTTTGTAGGATCACTGGTGGCTACCCTACCCACCCTTCTAGCAAGG
CAGCAAGGGCCTCATGGCGAGTCCTTCTCACAAGCCGTACGTACAAGCCC
TACCATAAAGGCCTTAGGAGTGTCTATACACACTCTTCTTTCTACAGGTG
TCCCCTTAGAAGACCTGACTGAAATTATTGGCCAAGACTGGGTAACTTGG
GGGGGAACAGCACCACCTGCACCTACCCCAGAGGTCCACATCCTGGCAGC
TCATGACGCCAGGATCACAAGGAGGGCTCAGCACGAGATCACACGCCTCC
TCAACAGGATT
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Coding sequence (CDS) from alignment at C-tenellus_contig83:268..978-

>mRNA_C-tenellus_contig83.3.1 ID=mRNA_C-tenellus_contig83.3.1|Name=mRNA_C-tenellus_contig83.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=711bp|location=Sequence derived from alignment at C-tenellus_contig83:268..978- (Choristocarpus tenellus KU2346)
CTAGGGGCTCCAGTAGGAACAGATGATTTCATTCGAGCTCACATGGCGGA
GGTGATAGAGAGCTCTGGGACACGAGCTTTAGCTACACACCTCAGCGAGA
TGGAGGACAAGCAGGTGGCCTGGCTCCTCAACTCCTGGTCCCTCTCCTCT
AGGCTAGGCTATCTGGTGAGGGTCACTCCCCCTCACCTGGCACGCTCCAC
CATGGAGCAAGCGGACAACACCTCCCTGTGGACACTAGAGAGGATAATGG
AGATAGCTGATGCAACAGAGGGGACAGACTTCTTCGAGGGAGGGTGCAAC
AGTAGGTCTCTCCGCCTAGAGACCCACCAACAAGTACAGGCACAGATGCC
TACAAGTGCGGGGGGTCTAGGCCTCTCTTCCATGAAACACCGCCAGCATG
CGGCTTTTGTAGGATCACTGGTGGCTACCCTACCCACCCTTCTAGCAAGG
CAGCAAGGGCCTCATGGCGAGTCCTTCTCACAAGCCGTACGTACAAGCCC
TACCATAAAGGCCTTAGGAGTGTCTATACACACTCTTCTTTCTACAGGTG
TCCCCTTAGAAGACCTGACTGAAATTATTGGCCAAGACTGGGTAACTTGG
GGGGGAACAGCACCACCTGCACCTACCCCAGAGGTCCACATCCTGGCAGC
TCATGACGCCAGGATCACAAGGAGGGCTCAGCACGAGATCACACGCCTCC
TCAACAGGATT
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