mRNA_C-tenellus_contig8277.2.2 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig8277.2.2 vs. uniprot
Match: D8LJN1_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJN1_ECTSI) HSP 1 Score: 245 bits (626), Expect = 4.690e-71 Identity = 187/446 (41.93%), Postives = 238/446 (53.36%), Query Frame = 1 Query: 19 LVVQLMSKIVNLRRKPPLTLMLMAAMTIIHLKPELFRELLEGSGEFLGGNGLRDVLRGAMGRGTGIVQSICLKPNVIVDTFFRQGRVDLRRLLLSAFLHGDDLHLYYNMASLLLKGVTLELSLGSMAFARTIIFTLLVSHGLVVAIAWTLFNFLDVPGPYQSCSIGFSAVLFALKYIISCRSPPGTSVRVMGLTVSARHAAWLELALISALVPNASFLGHLCGILAGILHEHA------LPLFLGDPTPVPPRFRGRTSGRGGWWPWSSRPSYTYRSGTSGASPPNEGTSQGNGTGLGQGGVDNRGTGMGRHTTRVWVEGGASAGNSDDPD-----LQEAIRRSLQPGQTRGSG------ESNGVDRRYSPPSPSTPLPSEAVRAT------PSAPPVWEVAGDSGTGTXXXXXXXXXSETLQMPVGSNAASELRRRRLLRFDAKR 1287 L ++L+ +I L+ KPPLTL LMA M+ +HLKP++F++L G F L G ++++CL P I+DT+ R G V++RRLL+S F+HGDD+HLYYNMAS LLKGV+LEL++G+ AFA + F+LL S L++ AW L DVP P +C++GFS VLFALKY++S RSP TSV MG +V R+A WLEL LIS +VPNASFLGHLCGILAG+L+ + LF G + RGR SYTY SGTSG + P G R T + A+ DP+ LQEA+RRSL TRG G NG +P S S P+ +AV AT P+APP E AG G G G A ELRRRRL R A R Sbjct: 39 LALRLVHQISQLQHKPPLTLALMAGMSALHLKPDIFKDLFGRKGVFEW-----SWLTGGFDH----IRNVCLLPASILDTYERTGEVEIRRLLMSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMMLSAWVLLVVFDVPSPMHACAVGFSGVLFALKYVLSRRSPGVTSV--MGFSVHTRYATWLELVLISVMVPNASFLGHLCGILAGVLYVEVPIVLRVVNLFTGIS--LYNNRRGR--------------SYTYNSGTSGRASPE---------------------GARRETRQQSPNPPAAYDIDSDPEAEEAALQEALRRSLLDS-TRGGGAGDNLRRDNGNSAADNPGSRSRPIGDDAVAATEFLGPAPTAPPPEENAGGYGAGG-----------------GEIAPDELRRRRLRRLGAGR 418
BLAST of mRNA_C-tenellus_contig8277.2.2 vs. uniprot
Match: A0A2R6WSK1_MARPO (RanBP2-type domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WSK1_MARPO) HSP 1 Score: 164 bits (414), Expect = 1.540e-41 Identity = 107/246 (43.50%), Postives = 142/246 (57.72%), Query Frame = 1 Query: 16 MLVVQLMSKIVNLRRKPPLTLMLMAAMTIIHLKPELFRELLEGSGEFLGGNGLRDVLRGAMGRGTGIVQSICLKPNVIVDTFFRQGRVDLRRLLLSAFLHGDDLHLYYNMASLLLKGVTLELSLGSMAFARTIIFTLLVSHGLVVAIAWTLFNFLDVPGP-YQSCSIGFSAVLFALKYIISCRSPPGTSVRVMGLTVSARHAAWLELALISALVPNASFLGHLCGILAGILHEHALPLFLGDPTPV 750 ML + S+ + L RKPP+T L+ A TI+HL+P G+ D++ VQ +CL P ++ + D RRLLLSAF H DD HL YNM SLL KGV LE S+GS FA + L +SHGLVV A L++F D PGP Y C++GFSAVLFALK +++ SP T+V G+ + +R+AAW EL I VP SFLGHLCG++AG+++ + L G PV Sbjct: 18 MLALHAASQFMQLPRKPPVTATLILANTIVHLRP-----------------GVLDLVLPT-------VQEVCLNPYRVLKDW------DARRLLLSAFYHVDDAHLVYNMISLLWKGVQLEGSMGSKKFAGMVGVLLGLSHGLVVVSAKFLYSFADNPGPMYSECAVGFSAVLFALKMVLNWNSPDYTNV--YGVLIPSRYAAWAELFFIQMFVPGTSFLGHLCGVVAGLIYINGSFLLSGTRAPV 231
BLAST of mRNA_C-tenellus_contig8277.2.2 vs. uniprot
Match: A0A836CHG7_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG7_9STRA) HSP 1 Score: 159 bits (402), Expect = 7.200e-40 Identity = 113/272 (41.54%), Postives = 145/272 (53.31%), Query Frame = 1 Query: 31 LMSKIVNLRRKPPLTLMLMAAMTIIHLKPELFRELLEGSGEFLGGNGLRDVLRGAMGRGTGIVQSICLKPNVIVDTFFRQGRVDLRRLLLSAFLHGDDLHLYYNMASLLLKGVTLELSLGSMAFARTIIFTLLVSHGLVVAIAWTLFNFLDVPGPYQSCSIGFSAVLFALKYIISCRSPPGTSVRVMGLTVSARHAAWLELALISALVPNASFLGHLCGILAGILHEHALPLFLGDPTPVPPRFRGRTSGRGGWWPWSSRPS-YTYRSGTSG 843 L+++ + L KPP T L+A IHL P +L F G +CLKP +V G VD RL SA +HGDDLHL+YNM SLL+KGV+LE ++G+ AFA ++F +SH LVV +A PG + SC +GFSAVLFALKY+ + R P V + +R A+W EL LI +VPNASFLGHLCGILAG+L H + + P GR G G + + R S YTY GTSG Sbjct: 22 LLNRFLQLPYKPPFTCFLIALNACIHLYPAALAGVLPARLLF------------------GDYTKVCLKPAKVVKELLN-GEVDAVRLFGSALIHGDDLHLWYNMGSLLMKGVSLETTMGTPAFALLVVFLWALSHTLVVVVALASVYLGFDPG-FNSCMVGFSAVLFALKYVAAFREP-ARPTPVGYFLIDSRWASWAELILIQVVVPNASFLGHLCGILAGVLWVHGGAVVAYTAKTLAPLGVGR-GGPGAYDTYGGRGSRYTYARGTSG 271
BLAST of mRNA_C-tenellus_contig8277.2.2 vs. uniprot
Match: A0A0D6R7I5_ARACU (RanBP2-type domain-containing protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R7I5_ARACU) HSP 1 Score: 151 bits (382), Expect = 4.820e-37 Identity = 96/232 (41.38%), Postives = 133/232 (57.33%), Query Frame = 1 Query: 16 MLVVQLMSKIVNLRRKPPLTLMLMAAMTIIHLKPELFRELLEGSGEFLGGNGLRDVLRGAMGRGTGIVQSICLKPNVIVDTFFRQGRVDLRRLLLSAFLHGDDLHLYYNMASLLLKGVTLELSLGSMAFARTIIFTLLVSHGLVVAIAWTLFNFLDVPGPYQS-CSIGFSAVLFALKYIISCRSPPGTSVRVMGLTVSARHAAWLELALISALVPNASFLGHLCGILAGILH 708 +L + + S+ L RKPP+T L+AA +I+L+P + ++L E +CL P ++ D++RL +SAF H D+ HL YNM SLL KGV LE +GS FA + L +SHG+VV +A L + D PGP+ S C++GFS+VLFALK +++ SP T+V G+ V ARHAAW EL LI VP SFLGHL GI+AG+L+ Sbjct: 16 LLAMHVASEFYQLERKPPVTAGLIAANALIYLRPGVLDDVLPTLSE------------------------VCLNPYLVFKN------KDVKRLFVSAFYHVDESHLVYNMLSLLWKGVQLETMMGSTEFASMVAVLLGLSHGIVVILAKVLATYFDYPGPWTSECAVGFSSVLFALKVVLNSNSPNYTNV--YGVIVPARHAAWAELLLIQMFVPGVSFLGHLSGIIAGLLY 215
BLAST of mRNA_C-tenellus_contig8277.2.2 vs. uniprot
Match: A0A0A7E6Y5_GINBI (Rhomboid protein Ginbi_RBL14 n=1 Tax=Ginkgo biloba TaxID=3311 RepID=A0A0A7E6Y5_GINBI) HSP 1 Score: 151 bits (382), Expect = 5.050e-37 Identity = 107/267 (40.07%), Postives = 143/267 (53.56%), Query Frame = 1 Query: 1 KAYFAMLVVQLMSKIVNLRRKPPLTLMLMAAMTIIHLKPELFRELLEGSGEFLGGNGLRDVLRGAMGRGTGIVQSICLKPNVIVDTFFRQGRVDLRRLLLSAFLHGDDLHLYYNMASLLLKGVTLELSLGSMAFARTIIFTLLVSHGLVVAIAWTLFNFLDVPGPYQS-CSIGFSAVLFALKYIISCRSPPGTSVRVMGLTVSARHAAWLELALISALVPNASFLGHLCGILAGILHEHALPLFLGDPTPVPPRFRGRTSGRGGWWP 798 + ++L +Q+ S+ L RKPP+T L+AA T+I+L+P + ++L E +CL P +++ D++RL LSAF H D+ HL YNM SLL KGV LE +GS FA + L +SHG+VV +A L F D P S C++GFSAVLFALK +++ SP V G+ V ARHAAW EL LI VP SFLGHL GI AG+L+ F G P+ P R T+ G WP Sbjct: 11 RGMLSLLALQVASQFYQLERKPPVTAGLIAANTLIYLRPGVLDDVLPPLSE------------------------VCLNPYLVLKDR------DVKRLFLSAFYHVDESHLVYNMLSLLWKGVQLERMMGSTEFASMVALLLGLSHGIVVVLAKLLATFFDYPYALISECAVGFSAVLFALKVVLNSNSP--NYANVYGVLVPARHAAWAELLLIQMFVPGVSFLGHLSGIFAGLLYLRLQRFFPGS-NPLYPIIRKVTAIMG--WP 242
BLAST of mRNA_C-tenellus_contig8277.2.2 vs. uniprot
Match: F0W223_9STRA (Serine protease family S54 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W223_9STRA) HSP 1 Score: 149 bits (377), Expect = 6.500e-37 Identity = 96/223 (43.05%), Postives = 131/223 (58.74%), Query Frame = 1 Query: 31 LMSKIVNLRRKPPLTLMLMAAMTIIHLKPELFRELLEGSGEFLGGNGLRDVLRGAMGRGTGIVQSICLKPNVIVDTFFRQGRVDLRRLLLSAFLHGDDLHLYYNMASLLLKGVTLELSLGSMAFARTIIFTLLVSHGLVVAIAWTLFNFLDVPGPYQSCSIGFSAVLFALKYIISCRSPPGTSVRVMGLTVSARHAAWLELALISALVPNASFLGHLCGILAG 699 L+ KI+ + RKPPLT+ L+ M+ +H + + D+ GA T +S L PN+IV R + RL+ SAF HGDD+HLY+NM S L KG LE +GS FA +I+ LLVSHGL+V ++ +F P + CS+GFSAVLF LK +++ +SP + + G V ++AAWLEL LI LVP+ASFLGHLCGI+AG Sbjct: 23 LIQKIMQMDRKPPLTISLIVLMSNLHFR-------------------IFDI--GA----TLSPESYMLCPNLIVR------RHEWERLIGSAFFHGDDIHLYHNMVSFLWKGYQLESKMGSYHFACLLIYLLLVSHGLIVLASYLIFKLQHNPHAWTQCSLGFSAVLFGLKVVLNSKSP--NTSNIYGFQVPTKYAAWLELVLIHVLVPDASFLGHLCGIVAG 212
BLAST of mRNA_C-tenellus_contig8277.2.2 vs. uniprot
Match: A0A482UPC4_9ARCH (Rhomboid family intramembrane serine protease (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UPC4_9ARCH) HSP 1 Score: 145 bits (366), Expect = 4.580e-36 Identity = 92/234 (39.32%), Postives = 137/234 (58.55%), Query Frame = 1 Query: 19 LVVQLMSKIVNLRRKPPLTLMLMAAMTIIHLKPELFRELLEGSGEFLGGNGLRDVLRGAMGRGTGIVQSICLKPNVIVDTFFRQGRVDLRRLLLSAFLHGDDLHLYYNMASLLLKGVTLELSLGSMAFARTIIFTLLVSHGLVVAIAWTLFNFLDVP--GPYQSCSIGFSAVLFALKYIISCRSPPGTSVRVMGLTVSARHAAWLELALISALVPNASFLGHLCGILAGILHEH 714 L++Q++S++ L KPP+TL L+A I H+ P+ + L+ S L +V + C+ P++IV + + R++L+ F+H DD+HLYYNM SLL KGV LE GS F ++++LL SH L+V +++ ++ Y SC+IGFSAVLF+LKY+++ SP TS+ +G V ++ AAW EL L S L P SF+GHL GILAG L+ H Sbjct: 21 LLIQILSQLEKLPYKPPVTLGLLAMNIIAHIHPDPY--FLDYS--------LTNVRQN------------CIWPSLIVSSLTNNHSILWNRIVLAGFMHADDMHLYYNMLSLLWKGVQLEQQFGSFQFGILVVYSLLASHILLVVMSYVVYAVTQNIHISSYDSCAIGFSAVLFSLKYVLNQNSPAYTSI--LGFQVPSKWAAWAELVLASLLSPQVSFIGHLAGILAGYLYVH 230
BLAST of mRNA_C-tenellus_contig8277.2.2 vs. uniprot
Match: A0A024G5H6_9STRA (Rhomboid domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G5H6_9STRA) HSP 1 Score: 144 bits (362), Expect = 3.660e-35 Identity = 82/167 (49.10%), Postives = 106/167 (63.47%), Query Frame = 1 Query: 220 QSICLKPNVIVDTFFRQGRVDLRRLLLSAFLHGDDLHLYYNMASLLLKGVTLELSLGSMAFARTIIFTLLVSHGLVVAIAWTLFNFLDVPGPYQSCSIGFSAVLFALKYIISCRSPPGTSVRVMGLTVSARHAAWLELALISALVPNASFLGHLCGILAG---ILHE 711 +S L PN+I R + RL+ +AF HGDD+HLY+NM S L KG LE +GS FA + + LLVSHGL+V ++ + + P + CS+GFSAVLF LK +++ SP TS+ G V ++AAWLEL LI LVPNASFLGHLCGI+AG ILH Sbjct: 32 ESYMLCPNLIAR------RREWERLIGAAFFHGDDIHLYHNMVSFLWKGYQLESKMGSYRFACVLAYLLLVSHGLIVLTSYLILKYQHNPHAWTQCSLGFSAVLFGLKVVLNSESPNTTSI--YGFHVPTKYAAWLELVLIHVLVPNASFLGHLCGIVAGYSWILHS 190
BLAST of mRNA_C-tenellus_contig8277.2.2 vs. uniprot
Match: A0A024TVC7_9STRA (Rhomboid domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TVC7_9STRA) HSP 1 Score: 143 bits (361), Expect = 6.840e-35 Identity = 108/280 (38.57%), Postives = 150/280 (53.57%), Query Frame = 1 Query: 16 MLVVQLMSKIVNLRRKPPLTLMLMAAMTIIHLKPELFRELLEGSGEFLGGNGLRDVLRGAMGRGTGIVQSICLKPNVIVDTFFRQGRVDLRRLLLSAFLHGDDLHLYYNMASLLLKGVTLELSLGSMAFARTIIFTLLVSHGLVVAIAWTLFNFLDVPGPYQSCSIGFSAVLFALKYIISCRSPPGTSVRVMGLTVSARHAAWLELALISALVPNASFLGHLCGILAGILHEHALPLFLGDPTPVPPRFRGRTSGRGGWWPWSSRPSYTYRSGTSGASPP 855 ML +QL+ +I L RKPP+TL+LM M G FL +G G T ++C P++IV+ + L RL++SAFLH D+ HLY NMAS L KGV LE +GS FAR I L++SH L V +A+ L F+ C+IGFSAVLFALK +++ RSP T ++G++ ++AAW+EL + VP +SF+GH+ GI AG L+ + L T +P GG + RP+YTY SG + S P Sbjct: 27 MLAMQLLGQIQQLERKPPVTLLLMGGMV----------------GLFL--------YQGHPGIPTARKYALC--PDIIVEKYA------LSRLIVSAFLHVDEWHLYNNMASFLWKGVQLEFHVGSERFARMIGVLLVMSHVLAVVVAYILSTFMGNSSYIHQCAIGFSAVLFALKVVLNQRSP--TYSTILGISFPTKYAAWVELVYLHYFVPGSSFVGHIAGIAAGYLYLYGLSAVPTRATTIP----------GG----TRRPAYTYASGRATNSTP 258
BLAST of mRNA_C-tenellus_contig8277.2.2 vs. uniprot
Match: L8GZE0_ACACA (Peptidase, S54 (Rhomboid) subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZE0_ACACA) HSP 1 Score: 142 bits (358), Expect = 2.570e-34 Identity = 87/182 (47.80%), Postives = 109/182 (59.89%), Query Frame = 1 Query: 274 RVDLRRLLLSAFLHGDDLHLYYNMASLLLKGVTLELSLGSMAFARTIIFTLLVSHGLVVAIAWTLFNFLDVPGPYQSCSIGFSAVLFALKYIISCRSPPGTSVRVMGLTVSARHAAWLELALISALVPNASFLGHLCGILAGILH------------EHALPLFLGDPTPVPPRFRGRTSGR 783 R+DLRRLLL++F H DD+HLYYNM SLL KG LE +GS FA ++ LVS+ L+V + L F D+PGPY SC++GFSAVLFALK + + S S MG+ V ++ W EL LI LVP +SF GHLCGIL GIL+ + L FLG +PP G GR Sbjct: 62 RLDLRRLLLASFFHLDDMHLYYNMVSLLWKGRDLEPRMGSKRFATLVVLFALVSNMLMVVGSVLLDRFADMPGPYNSCAVGFSAVLFALKVVTTHYSTSPYS-HFMGMLVPTQYLYWFELVLIHLLVPGSSFFGHLCGILTGILYVKGVFRPILELVDFVLSFFLGG---LPPSASGGGGGR 239 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8277.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig8277.2.2 >prot_C-tenellus_contig8277.2.2 ID=prot_C-tenellus_contig8277.2.2|Name=mRNA_C-tenellus_contig8277.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=425bp MLVVQLMSKIVNLRRKPPLTLMLMAAMTIIHLKPELFRELLEGSGEFLGGback to top mRNA from alignment at C-tenellus_contig8277:3609..5855+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig8277.2.2 ID=mRNA_C-tenellus_contig8277.2.2|Name=mRNA_C-tenellus_contig8277.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2247bp|location=Sequence derived from alignment at C-tenellus_contig8277:3609..5855+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig8277:3609..5855+ >mRNA_C-tenellus_contig8277.2.2 ID=mRNA_C-tenellus_contig8277.2.2|Name=mRNA_C-tenellus_contig8277.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1275bp|location=Sequence derived from alignment at C-tenellus_contig8277:3609..5855+ (Choristocarpus tenellus KU2346)back to top |