mRNA_C-tenellus_contig8277.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8277.1.1
Unique NamemRNA_C-tenellus_contig8277.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8277.1.1 vs. uniprot
Match: D8LG74_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG74_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 2.400e-67
Identity = 124/219 (56.62%), Postives = 147/219 (67.12%), Query Frame = 1
Query:  109 NALLESPTGTGKTLCLLCSTLAWQFKASLAVKKGGQKGSLAYEDPG----------QAPPLPQTQSMPVGVPT-IIYSSRTHSQLAQVVKELKNTTYRPRLSLLGSREQLCVHDDVRRLKGQAMNHACGALVSGRQCKYHRGTE-----AGPVVNT---------NQNQVVDIEELVSLAKTHQFCPYYHSRGEAPQAELVLMPYNYLLDPNSRRGVKV 690
            NALLESPTGTGKTLCLL ++LAWQ + S  V        LAY++            Q P      ++   +P+ IIY+SRTHSQL QV  ELKNT YRPRLSLLGSR+QLCVH++V ++KG A NHAC ALV  R+CKYHRGTE     AG              +Q+ V DIEELVSLAK H+FCPYY  RG AP+AELVLMPYNYLLDP +RRG+K+
Sbjct:    3 NALLESPTGTGKTLCLLTASLAWQQRNSAMVASKPAPTQLAYDERPVTDLSRPRHEQQPYQENKPALAAAMPSVIIYASRTHSQLGQVANELKNTVYRPRLSLLGSRDQLCVHEEVSQMKGGAKNHACSALVKARRCKYHRGTEDMVERAGXXXXXXXXXXXXPPDQSTVPDIEELVSLAKKHEFCPYYLGRGHAPRAELVLMPYNYLLDPGTRRGIKI 221          
BLAST of mRNA_C-tenellus_contig8277.1.1 vs. uniprot
Match: A0A482SMY5_9ARCH (Helicase ATP-binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMY5_9ARCH)

HSP 1 Score: 217 bits (553), Expect = 1.990e-65
Identity = 106/239 (44.35%), Postives = 159/239 (66.53%), Query Frame = 1
Query:    1 MPTFDINGTDVDFPFQPYDCQFTYMRSVMEALNTPTNALLESPTGTGKTLCLLCSTLAWQFKASLAVKKGGQKGSLAYE-------DPGQAPPLPQTQSMPVGVPTIIYSSRTHSQLAQVVKELKNTTYRPRLSLLGSREQLCVHDDVRRLKGQAMNHACGALVSGRQCKYHRGTEA--GPVVNTNQNQVVDIEELVSLAKTHQFCPYYHSRGEAPQAELVLMPYNYLLDPNSRRGVKV 690
            MP   I+G +V+FP  PY+CQ TYM+ V++A++T +NALLESPTGTGKTL LLC++LAWQ + +  ++    K +   +           AP + Q          IIY++RTHSQL QV++EL++T YRP++++LGSREQLC+HD V +LKG A+NHAC  L + R C+Y    ++  G V++ +Q +VVDIE+L  + +    CPY++SR  +  A+++ MPYNYLLD + R+  ++
Sbjct:    1 MPVVPISGVNVEFPKTPYECQVTYMQKVLQAMSTGSNALLESPTGTGKTLSLLCASLAWQKQHNRRLEPANDKINQFDQFNVSKDNSTANAPTINQNV-------VIIYATRTHSQLNQVIRELQSTAYRPKMAVLGSREQLCIHDKVSKLKGSAINHACTTLTTQRGCRYRNNLDSDNGSVIHVSQEEVVDIEDLALIGRRKAICPYFYSRDMSANADIIFMPYNYLLDASIRKTTRI 232          
BLAST of mRNA_C-tenellus_contig8277.1.1 vs. uniprot
Match: A0A836CNR1_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNR1_9STRA)

HSP 1 Score: 224 bits (570), Expect = 5.110e-65
Identity = 119/237 (50.21%), Postives = 149/237 (62.87%), Query Frame = 1
Query:    1 MPTFDINGTDVDFPFQPYDCQFTYMRSVMEALNTPTNALLESPTGTGKTLCLLCSTLAWQFKASLAVKKGGQKGSLAYEDPGQAPPLPQTQSMPVGVP-------TIIYSSRTHSQLAQVVKELKNTTYRPRLSLLGSREQLCVHDDVRRLKGQAMNHACGALVSGRQCKYHRGTEAGPVVNTNQNQVVDIEELVSLAKTHQFCPYYHSRGEAPQAELVLMPYNYLLDPNSRRGVKV 690
            M   +I G  V FPF+PYDCQ  YM +V+ AL+  TNALLESPTGTGKTLCLLCS LAWQ        +   +G  + +  G                       TIIY+SRTHSQL+QV +ELK+T YRPRL+LLGSREQLCVH ++ +L+G  +N AC AL S R C +HR  +AG       + V+DIEEL +  +   FCPYY SRG A  A+LVLMPYNYLLD  +RR +++
Sbjct:    1 MAALNIEGVPVQFPFKPYDCQRDYMTAVIRALSDKTNALLESPTGTGKTLCLLCSALAWQAHNKAQQARQLSRGGGSMQQLGXXXXXXXXXXXXXXXXXXXXXRCTIIYASRTHSQLSQVARELKSTAYRPRLALLGSREQLCVHKEIAQLRGGQLNAACQALASRRACAHHRALDAG--AGPPADAVLDIEELAARGRAEGFCPYYLSRGAAADADLVLMPYNYLLDAAARRALRL 235          
BLAST of mRNA_C-tenellus_contig8277.1.1 vs. uniprot
Match: UPI000E6F4BBA (regulator of telomere elongation helicase 1 homolog n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F4BBA)

HSP 1 Score: 221 bits (563), Expect = 3.620e-64
Identity = 114/239 (47.70%), Postives = 160/239 (66.95%), Query Frame = 1
Query:    1 MPTFDINGTDVDFPFQPYDCQFTYMRSVMEALNTPTNALLESPTGTGKTLCLLCSTLAWQ-----FKASLAVKKGGQKGSLAYEDPGQAPPLPQTQSMPVGVPTIIYSSRTHSQLAQVVKELKNTTYRPRLSLLGSREQLCVHDDVRRLKGQAMNHACGALVSGRQCKYHRGT----EAGPVVNTNQNQVVDIEELVSLAKTHQFCPYYHSRGEAPQAELVLMPYNYLLDPNSRRGVKV 690
            MP + I G +VDFPF+ YDCQ  YM  V+E+L T +NALLESPTGTGKTLCLLC+TLAW+     F   ++  KG  KG+   +D G   P  Q++    G+PTI+Y+SRTHSQL QV++ELK T YRP++++LGSREQLC+HDDV+ L+G+A  +AC  +   R+CK+ R      +  P +    ++ VDIE+LV++ ++H  CPYY SR      ++V  PYNYL+D  +R  + +
Sbjct:    1 MPIYKIRGINVDFPFEAYDCQIVYMEKVIESLQTKSNALLESPTGTGKTLCLLCATLAWRKSLGAFSHGVSAFKG--KGN---KDDG---PSSQSEKKQTGLPTIVYTSRTHSQLQQVIQELKRTNYRPKMTVLGSREQLCIHDDVQMLQGKAQTNACHFICKKRECKHQRQVPDYLKGNPYLG---DEPVDIEDLVNIGRSHGACPYYVSRELHKVVDIVFAPYNYLIDHGNRGSLAI 228          
BLAST of mRNA_C-tenellus_contig8277.1.1 vs. uniprot
Match: A0A7F8R8A6_LEPWE (regulator of telomere elongation helicase 1 n=1 Tax=Leptonychotes weddellii TaxID=9713 RepID=A0A7F8R8A6_LEPWE)

HSP 1 Score: 210 bits (535), Expect = 3.780e-64
Identity = 109/236 (46.19%), Postives = 145/236 (61.44%), Query Frame = 1
Query:    1 MPTFDINGTDVDFPFQPYDCQFTYMRSVMEALNTPTNALLESPTGTGKTLCLLCSTLAWQ--FKASLAVKKGGQK--GSL----AYEDPGQAPPLPQTQSMPVGVPTIIYSSRTHSQLAQVVKELKNTTYRPRLSLLGSREQLCVHDDVRRLKGQAMN-HACGALVSGRQCKYHRGTEAGPVVNTNQNQVVDIEELVSLAKTHQFCPYYHSRGEAPQAELVLMPYNYLLDPNSRRG 681
            MP   +NG  VDFPFQPY CQ  YM  V+E L    N LLESPTGTGKTLCLLC+TLAW+   + +++ +K  ++  G L         G A     T +  + +P IIY+SRTHSQL QV+ EL+NT+YRPR+ +LGSREQLC+H +V++ +   M  H C   V+ R C+++   E   +       ++DIE+LV     H  CPYY SR    QA+++ MPYNYLLD  SRR 
Sbjct:    1 MPKIALNGVTVDFPFQPYPCQEEYMSKVLECLQKKVNGLLESPTGTGKTLCLLCTTLAWREHLRDTISARKIAERAQGELFPDRTLSSWGLAASDGDTTACYMDIPKIIYASRTHSQLTQVISELRNTSYRPRVCVLGSREQLCIHPEVKKQESNHMQIHLCRKKVASRSCRFYNNVEEKSLQQELATPILDIEDLVRSGNKHGLCPYYLSRNLKQQADIIFMPYNYLLDAKSRRA 236          
BLAST of mRNA_C-tenellus_contig8277.1.1 vs. uniprot
Match: A0A4W5K8S7_9TELE (Helicase ATP-binding domain-containing protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5K8S7_9TELE)

HSP 1 Score: 210 bits (535), Expect = 6.770e-64
Identity = 109/237 (45.99%), Postives = 144/237 (60.76%), Query Frame = 1
Query:    1 MPTFDINGTDVDFPFQPYDCQFTYMRSVMEALNTPTNALLESPTGTGKTLCLLCSTLAWQ--FKASLAVKKGGQKGSLAYEDP-------GQAPPLPQTQSMPVGVPTIIYSSRTHSQLAQVVKELKNTTYRPRLSLLGSREQLCVHDDVRRLKGQAMN-HACGALVSGRQCKYHRGTEAGPVVNTNQNQVVDIEELVSLAKTHQFCPYYHSRGEAPQAELVLMPYNYLLDPNSRRG 681
            MP   + G  VDFPF PY+CQ  YM  V+E L    N +LESPTGTGKTLCLLC+TLAW+  FK +++ +K  +K   A   P       G A     T +    +P IIY+SRTHSQL QV+ ELKNT+YRP++ +LGSREQLC++ +V R +   +  H C   +S R C ++   E   +     N ++D+E+LV      + CPYY SR    QAE++ MPYNYLLDP SRR 
Sbjct:    1 MPPLTLKGITVDFPFTPYECQKDYMSKVIECLQNKVNGVLESPTGTGKTLCLLCATLAWRDYFKDTISARKIAEKMGGAELFPNTPLASWGTAATDGDTTTYYTDIPKIIYASRTHSQLTQVINELKNTSYRPKVCVLGSREQLCINPEVMRQESNHLKVHMCRQKISSRSCVFYNNVEEKSMDKDLVNSILDVEDLVKAGNKQRVCPYYLSRSLKQQAEIIFMPYNYLLDPKSRRA 237          
BLAST of mRNA_C-tenellus_contig8277.1.1 vs. uniprot
Match: UPI000778E3EB (regulator of telomere elongation helicase 1 n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000778E3EB)

HSP 1 Score: 212 bits (539), Expect = 7.420e-64
Identity = 110/237 (46.41%), Postives = 144/237 (60.76%), Query Frame = 1
Query:    1 MPTFDINGTDVDFPFQPYDCQFTYMRSVMEALNTPTNALLESPTGTGKTLCLLCSTLAWQ--FKASLAVKKGGQK--GSLAYEDP-----GQAPPLPQTQSMPVGVPTIIYSSRTHSQLAQVVKELKNTTYRPRLSLLGSREQLCVHDDVRRLKGQAMN-HACGALVSGRQCKYHRGTEAGPVVNTNQNQVVDIEELVSLAKTHQFCPYYHSRGEAPQAELVLMPYNYLLDPNSRRG 681
            MP   +NG  +DFPF PY CQ  YM  V+E L    N +LESPTGTGKTLCLLCS LAWQ  FK +++ +K  Q+  G+  + D      G+A       +    VP IIY+SRTHSQL QV+ ELKNT YRP++ +LGSR+QLC+H +V+R +   M  H C   V+ R C ++   E         N ++DIE+L+     H+ CPYY SR    QA+++ MPYNYLLD  SRR 
Sbjct:    1 MPKIKLNGITIDFPFPPYKCQEEYMSKVLECLQKQVNGILESPTGTGKTLCLLCSALAWQGHFKDAVSAQKIAQRLNGAELFSDQPLSSWGKAVTGTDVPAYYSDVPKIIYASRTHSQLTQVISELKNTVYRPKVCVLGSRDQLCIHPEVKRQENNHMQIHLCRLKVTARMCHFYNNVEEKSTEKDLINPILDIEDLIKNGNKHRVCPYYLSRNLKQQADIIFMPYNYLLDSKSRRS 237          
BLAST of mRNA_C-tenellus_contig8277.1.1 vs. uniprot
Match: C4J9W5_MAIZE (Helicase ATP-binding domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=C4J9W5_MAIZE)

HSP 1 Score: 208 bits (529), Expect = 1.210e-63
Identity = 112/239 (46.86%), Postives = 149/239 (62.34%), Query Frame = 1
Query:    1 MPTFDINGTDVDFPFQPYDCQFTYMRSVMEALNTPTNALLESPTGTGKTLCLLCSTLAWQ--FKASLAVKKGGQKGSLAYEDPGQAPPLPQTQSMPVG-------VPTIIYSSRTHSQLAQVVKELKNTTYRPRLSLLGSREQLCVHDDVRRLKGQAMNHACGALVSGRQCKYHRGTEAGPVVNTNQ--NQVVDIEELVSLAKTHQFCPYYHSRGEAPQAELVLMPYNYLLDPNSRRGV 684
            MP + I G +VDFPF  YDCQ TYM  V+E+L    NALLESPTGTGKTLCLLC++LAW+  F   L V +GG  G       G  P   Q               P IIY+SRTHSQL QV+KELK T+YRP++++LGSREQ+C+HD+V +L G+A N+AC  L   R+C  H    A  + N  +  N+  DIE+L+++ +    CPYY SR  +   +++  PYNYL+DP +RR +
Sbjct:    1 MPVYSIRGVNVDFPFDAYDCQITYMDRVIESLQQGKNALLESPTGTGKTLCLLCASLAWRRTFGEFLRVGRGG--GGTKQLPYGSQPSASQQSEDSTSQKQQQSRYPVIIYASRTHSQLRQVIKELKATSYRPKMAVLGSREQMCIHDEVSKLHGRAQNNACHFLCKKRRCP-HNNHVAEFIKNKPELGNEPFDIEDLINIGRHKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSL 236          
BLAST of mRNA_C-tenellus_contig8277.1.1 vs. uniprot
Match: A0A093GG69_DRYPU (Regulator of telomere elongation helicase 1 (Fragment) n=2 Tax=Dryobates pubescens TaxID=118200 RepID=A0A093GG69_DRYPU)

HSP 1 Score: 217 bits (552), Expect = 2.470e-63
Identity = 114/237 (48.10%), Postives = 145/237 (61.18%), Query Frame = 1
Query:    1 MPTFDINGTDVDFPFQPYDCQFTYMRSVMEALNTPTNALLESPTGTGKTLCLLCSTLAWQ--FKASLAVKKGGQK---GSLAYEDP----GQAPPLPQTQSMPVGVPTIIYSSRTHSQLAQVVKELKNTTYRPRLSLLGSREQLCVHDDVRRLKGQAMN-HACGALVSGRQCKYHRGTEAGPVVNTNQNQVVDIEELVSLAKTHQFCPYYHSRGEAPQAELVLMPYNYLLDPNSRRG 681
            MP   +NG  VDFPF+PY CQ  YM  V+E L    N +LESPTGTGKTLCLLCSTLAW+  FK S+  +K  Q+   G L    P    G A P  +  +    VP IIY+SRTHSQL QV+ ELKNT YRP++ +LGSREQLC++ +V+RL+   M  + C + V  R C ++   E           ++DIE+LV     H+ CPYY SR    QAE++ MPYNYLLD  SR+ 
Sbjct:    1 MPRLTLNGITVDFPFEPYPCQEVYMEKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWREHFKDSITARKIAQRMAGGELFPGRPLCSWGTAAPEEEASTYYTDVPKIIYASRTHSQLTQVINELKNTAYRPKICVLGSREQLCINPEVKRLQSNHMQIYTCRSKVMNRACHFYTNVEEKSTDKELMKSIMDIEDLVKNGSKHRACPYYLSRSLKQQAEVIFMPYNYLLDSKSRKS 237          
BLAST of mRNA_C-tenellus_contig8277.1.1 vs. uniprot
Match: V8NB43_OPHHA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Ophiophagus hannah TaxID=8665 RepID=V8NB43_OPHHA)

HSP 1 Score: 208 bits (529), Expect = 4.970e-63
Identity = 111/233 (47.64%), Postives = 144/233 (61.80%), Query Frame = 1
Query:    1 MPTFDINGTDVDFPFQPYDCQFTYMRSVMEALNTPTNALLESPTGTGKTLCLLCSTLAWQ--FKASLAVKKGGQKGSLAYEDPGQAPPLPQTQSMPVG---------VPTIIYSSRTHSQLAQVVKELKNTTYRPRLSLLGSREQLCVHDDVRRLKGQAMN-HACGALVSGRQCKYHRGTEAGPVVNTNQNQVVDIEELVSLAKTHQFCPYYHSRGEAPQAELVLMPYNYLLD 663
            MP   +NG  +DFPF PY CQ +YM  V+E L    N +LESPTGTGKTLCLLCSTLAW+  FK +++ +K  Q+   A   P Q  PL    S   G         VP IIY+SRTHSQLAQV+ ELKNT YRP++ +LGSR+QLC+H +V++ +   M  H C   +S R C ++   E         + ++DIE+LV   K H+ CPYY SR    QA+++ MPYNYLLD
Sbjct:    1 MPKIKLNGITIDFPFPPYKCQESYMSKVLECLQKQVNGILESPTGTGKTLCLLCSTLAWRAHFKDAVSAQKIAQRLKGAELFPNQ--PLSSWGSAVTGTEVPAYYTDVPKIIYASRTHSQLAQVIGELKNTVYRPKVCVLGSRDQLCIHPEVKKQENNHMQIHLCRMKMSSRSCHFYNNLEEKGTEKDLIDPILDIEDLVKNGKKHRVCPYYLSRSLKQQADIIFMPYNYLLD 231          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8277.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG74_ECTSI2.400e-6756.62Helicase ATP-binding domain-containing protein n=1... [more]
A0A482SMY5_9ARCH1.990e-6544.35Helicase ATP-binding domain-containing protein n=1... [more]
A0A836CNR1_9STRA5.110e-6550.21Helicase C-terminal domain-containing protein n=1 ... [more]
UPI000E6F4BBA3.620e-6447.70regulator of telomere elongation helicase 1 homolo... [more]
A0A7F8R8A6_LEPWE3.780e-6446.19regulator of telomere elongation helicase 1 n=1 Ta... [more]
A0A4W5K8S7_9TELE6.770e-6445.99Helicase ATP-binding domain-containing protein n=1... [more]
UPI000778E3EB7.420e-6446.41regulator of telomere elongation helicase 1 n=1 Ta... [more]
C4J9W5_MAIZE1.210e-6346.86Helicase ATP-binding domain-containing protein n=1... [more]
A0A093GG69_DRYPU2.470e-6348.10Regulator of telomere elongation helicase 1 (Fragm... [more]
V8NB43_OPHHA4.970e-6347.64Helicase ATP-binding domain-containing protein (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8277contigC-tenellus_contig8277:727..3291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LG74
PFAMsDEAD_2,Helicase_C_2,zf-C3HC4_3
Model size690
Max annot lvl2759|Eukaryota
KEGG koko:K11136
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.93e-68
EggNOG OGsCOG1199@1|root,KOG1132@2759|Eukaryota
Ec32 ortholog descriptionATP-dependent helicase, C-terminal
Ec32 orthologEc-17_004010.1
EC3.6.4.12
DescriptionATP-dependent DNA helicase activity
Cds size690
COG categoryKL
BRITEko00000,ko01000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790093.1396096-CDS-C-tenellus_contig8277:726..8761680790093.1396096-CDS-C-tenellus_contig8277:726..876Choristocarpus tenellus KU2346CDSC-tenellus_contig8277 727..876 -
1680790093.1520278-CDS-C-tenellus_contig8277:1492..16961680790093.1520278-CDS-C-tenellus_contig8277:1492..1696Choristocarpus tenellus KU2346CDSC-tenellus_contig8277 1493..1696 -
1680790093.1620522-CDS-C-tenellus_contig8277:2245..23771680790093.1620522-CDS-C-tenellus_contig8277:2245..2377Choristocarpus tenellus KU2346CDSC-tenellus_contig8277 2246..2377 -
1680790093.1740441-CDS-C-tenellus_contig8277:2767..28661680790093.1740441-CDS-C-tenellus_contig8277:2767..2866Choristocarpus tenellus KU2346CDSC-tenellus_contig8277 2768..2866 -
1680790093.184562-CDS-C-tenellus_contig8277:3186..32911680790093.184562-CDS-C-tenellus_contig8277:3186..3291Choristocarpus tenellus KU2346CDSC-tenellus_contig8277 3187..3291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8277.1.1prot_C-tenellus_contig8277.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8277 727..3291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8277.1.1

>prot_C-tenellus_contig8277.1.1 ID=prot_C-tenellus_contig8277.1.1|Name=mRNA_C-tenellus_contig8277.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=230bp
MPTFDINGTDVDFPFQPYDCQFTYMRSVMEALNTPTNALLESPTGTGKTL
CLLCSTLAWQFKASLAVKKGGQKGSLAYEDPGQAPPLPQTQSMPVGVPTI
IYSSRTHSQLAQVVKELKNTTYRPRLSLLGSREQLCVHDDVRRLKGQAMN
HACGALVSGRQCKYHRGTEAGPVVNTNQNQVVDIEELVSLAKTHQFCPYY
HSRGEAPQAELVLMPYNYLLDPNSRRGVKV
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mRNA from alignment at C-tenellus_contig8277:727..3291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8277.1.1 ID=mRNA_C-tenellus_contig8277.1.1|Name=mRNA_C-tenellus_contig8277.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2565bp|location=Sequence derived from alignment at C-tenellus_contig8277:727..3291- (Choristocarpus tenellus KU2346)
ATGCCGACCTTCGACATTAACGGAACGGATGTGGACTTTCCGTTTCAGCC CTACGATTGTCAGTTCACATATATGCGCAGCGTGATGGAGGCTTTGAACA CCCCGGTGAGGATGTTGTTGGAAGCAGTATTAGAAAGGTGGGTATGTCGG TACCGCATATTCCCTTCACCTACCACCTGTTCTCGTGAGGACTCTTTTAA TGAGTTGGTACTACAATGAAGGAGCAGCACACGCTCGTAGTAAACTCCTA CTCTTCATCTAGCTTTGATGGATCGTTGAGGTGTCCACTCTCGACATGCA TGTTTACCTCAACGCAGGCCTTGCTCAAATTGGTTAGAGGAGAATTCATT GAAAATCATACTATTTTTTTCCCCTTTACATTGTACTTTCCATTTCGTTC TTTCTACCTGCCATGTGGCGCCAAGACGAACGCCCTTCTTGAGAGCCCTA CAGGAACGGGGAAGACACTTTGCCTGCTGTGCTCAACGTTGGCTTGGCAA TTCAAGGCCAGCCTTGCAGTGAAGGTTTGACGTTACATGCGGAACTGCGA AAGTTGTTTACGACACCTGATGTAGGGCTGTGCTTGGAGATATCCTTGGA TTCACCCCATAAACCCTCTCGTTACTGTCGATGATCTACTGCAACATCAA CTCTTGAAACAATGTGTGGGTACATCTCTTGCGAATCAACTCTCATGCGC ACGGTGTGCTCTATATGTGTGTAGTGCGCAAAGAGTCGGAATCAACACCT TAGTTCAAACTCTTTTTCTTGCCGTACTTTCATAGTTGACCTCCACCAAT CAAAACCCTTGCTCCTACCCACCCACATTCCCCCAAAGATCACAAGAAGA ATGTAATTCTGTATCTAACGAGCAGTCCCTTGCTGCCCCCTCCCCGTGAC ATTGACACTCGTAGAAGGGTGGTCAGAAAGGGAGTCTTGCATACGAGGAC CCTGGGCAGGCTCCGCCTCTACCCCAAACTCAGTCTATGCCAGTAGGGGT GCCAACCATTATTTATTCTTCAAGGACACACAGTCAATTGGCGCAGGTAT GCACCGATACATTAGTGTACATCAGTGTGCTCACTCTTTCGCCACACATG GCTACTGTATCGCTTGCTAGCCTCATCGATGAGACTATTCATTGGCGCAG TAGAAGAAGCATTGGAAGCTCTAGGCTGTTCTGCTCTGCTGTACCTTTCC ACTTGTCATTACATATGTCATGCTTACTTAGGGTAGTAAACAACAATGAT GTGTGCATATCCCCCTCACAGTCGTCTGTGCACATGCTCCTTTGCTTGTC CTCGCTGTCATTTACTTGTGACCATTGTAAAGTTGACAGCAATTATGAAC TAAGCTATTTCCACATCCACAACCATCTGCGAACAAAAAACACATCCTAA AGCTTATGCACATGTTCACTCTTGTACACACAACAGACACACAGCCTCTC TCTCCCTCTCTCTTTCTTTCTCTTTCTCTTTCTTAAACAAAATACAAACA AGCAGGCACCATCAGGCAAGCCAAGGTGTCTTTCCCCTGTCCACCCCAAT CTTCACCAGCACCCTCCTCCCCTACTGCTCTTTTGCTTCTGGCAGGTGGT GAAGGAGCTCAAGAACACAACCTACCGCCCCAGATTGTCCCTGCTGGGAT CCCGGGAGCAGCTCTGTGTGCATGATGATGTGCGCCGACTCAAGGGACAA GCCATGAACCATGCCTGTGGTGCTTTGGTTTCAGGGAGGCAGTGCAAGTA CCACCGGGGGACTGAGGCGGGCCCTGTGGTTAACACCAACCAGAATCAGG TTTGACACAGTGAATACCTCAGGTGCAGTGTCATGGCTTTGTCCTGAAGC GCCTCCTTCCGCAGATTCATGTAGTGTGGGCTGCTGTAGGGCATTATTGT GAAAGAGGTGGTACATTGTAGCAGATATTGTTACCTGTATCACTTTACTC TGCGTGCTTCTTGGGGTTAGGGTGAATCAATGTTGTTCGTTCTTGTGCTT AGTATGAGTGCTTCCGCCTGCAGTGTGTCTCCATTGATCGATACGCTACT TCAGCCTACTTCATGTCTGGCTATGGCCTGGACTTCAATTTTGCTACTCC AATGATGAAACACTGCTCCGGAGCACCCAGAACTTTCCTCTTAGGTCCTT AATCTAGGTCCTGTATTGCTGTGGTGTTTTGTATACACTTAGGGTGTATG CCAGCTGCATCCTCAAGACATATGTTAAGACATTTACTTTGAATAACACA TTATGCTGCTTCCATGTGCTGTACTGCAGCATTGTGGGGTTGTGTGTACT GATGATACCAACCAGTAAATCAATATATATATATATATATACACCTGGTT GGTATTATGCCTCTTTTTTATACAAATTACTAGTAACCTTGATAAATCAA TCTCCTTCTGCCCAGGTAGTAGACATTGAGGAGTTGGTTTCGCTTGCAAA AACCCATCAGTTCTGCCCCTACTACCATAGCCGGGGGGAGGCGCCACAGG CTGAGCTTGTGCTAATGCCATACAACTACCTTCTTGACCCCAATTCAAGG AGGGGTGTCAAGGTA
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Coding sequence (CDS) from alignment at C-tenellus_contig8277:727..3291-

>mRNA_C-tenellus_contig8277.1.1 ID=mRNA_C-tenellus_contig8277.1.1|Name=mRNA_C-tenellus_contig8277.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=690bp|location=Sequence derived from alignment at C-tenellus_contig8277:727..3291- (Choristocarpus tenellus KU2346)
ATGCCGACCTTCGACATTAACGGAACGGATGTGGACTTTCCGTTTCAGCC
CTACGATTGTCAGTTCACATATATGCGCAGCGTGATGGAGGCTTTGAACA
CCCCGACGAACGCCCTTCTTGAGAGCCCTACAGGAACGGGGAAGACACTT
TGCCTGCTGTGCTCAACGTTGGCTTGGCAATTCAAGGCCAGCCTTGCAGT
GAAGAAGGGTGGTCAGAAAGGGAGTCTTGCATACGAGGACCCTGGGCAGG
CTCCGCCTCTACCCCAAACTCAGTCTATGCCAGTAGGGGTGCCAACCATT
ATTTATTCTTCAAGGACACACAGTCAATTGGCGCAGGTGGTGAAGGAGCT
CAAGAACACAACCTACCGCCCCAGATTGTCCCTGCTGGGATCCCGGGAGC
AGCTCTGTGTGCATGATGATGTGCGCCGACTCAAGGGACAAGCCATGAAC
CATGCCTGTGGTGCTTTGGTTTCAGGGAGGCAGTGCAAGTACCACCGGGG
GACTGAGGCGGGCCCTGTGGTTAACACCAACCAGAATCAGGTAGTAGACA
TTGAGGAGTTGGTTTCGCTTGCAAAAACCCATCAGTTCTGCCCCTACTAC
CATAGCCGGGGGGAGGCGCCACAGGCTGAGCTTGTGCTAATGCCATACAA
CTACCTTCTTGACCCCAATTCAAGGAGGGGTGTCAAGGTA
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