mRNA_C-tenellus_contig8266.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8266.1.1
Unique NamemRNA_C-tenellus_contig8266.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8266.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8266contigC-tenellus_contig8266:166..3053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2092
Hectar predicted targeting categoryother localisation
Exons2
Cds size1866
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790091.6808918-CDS-C-tenellus_contig8266:165..5641680790091.6808918-CDS-C-tenellus_contig8266:165..564Choristocarpus tenellus KU2346CDSC-tenellus_contig8266 166..564 -
1680790091.691403-CDS-C-tenellus_contig8266:1361..28281680790091.691403-CDS-C-tenellus_contig8266:1361..2828Choristocarpus tenellus KU2346CDSC-tenellus_contig8266 1362..2828 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790091.7088466-UTR-C-tenellus_contig8266:2828..30531680790091.7088466-UTR-C-tenellus_contig8266:2828..3053Choristocarpus tenellus KU2346UTRC-tenellus_contig8266 2829..3053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8266.1.1prot_C-tenellus_contig8266.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8266 166..2828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8266.1.1

>prot_C-tenellus_contig8266.1.1 ID=prot_C-tenellus_contig8266.1.1|Name=mRNA_C-tenellus_contig8266.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=622bp
MPTMGNPHPLSDCTKGPRPRSTRISRIALHPSIAVEKKRDQGIAGATVPG
GSEDCVQRRRKAIAGSRMGSTDSPVLKNVSRNKAPISSSPTISTPPAPRK
KRGRPTNEERLRRARDLALKHGWNPDIAFPNGVGDGLTTLERSVATSRER
APPPPSVRRIASPRVVRERPLDESRKLPVHFAGDDPSAVMVKVSVADPSS
VEYAEAVESLEALTACNNDERDGTRPRVGGGGLVQSNITAISLNPFTGLV
SSDASRGANYSRRGRTIDPDSDITTAPVGEVPIPSFSTCRWRSSIPGSVG
VDGVSGWEGARENKGRGRNIDGRSKRLGLGGVSRRERVGDKNQNGGFLEI
LATGPIRSSDVVQGSEYDMDDEDEDFLMQVTKKLLRGEGVGHRCGSRGSG
YGGGGRRPSQGGKAFVEGWGGVVATTPVGRRSLANSIGDPRSSSKGGDMD
GILPVEGRKRSEKSGLVLSRSLFESMIERLERQDFLNGQDQSLYKETIRL
GKEHGEYAIRCADLICEADAFLATSFAENGMPGGGDEDKSAGSGVRHESG
QFSLRNGKARTGKRERWQSIKTTGAFCGGDGGRGRTSGDKLEGDGAAGSA
SGTVMEGEGIGGSSSGVCFGEG
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mRNA from alignment at C-tenellus_contig8266:166..3053-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8266.1.1 ID=mRNA_C-tenellus_contig8266.1.1|Name=mRNA_C-tenellus_contig8266.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2888bp|location=Sequence derived from alignment at C-tenellus_contig8266:166..3053- (Choristocarpus tenellus KU2346)
GTTTCCAAGATTGGTTTATTAGATGGGGTCTGGAACTTCCTTCGCCTATG
CAGATCACTCTTCCTATGTCTAAAGACAGCAGGGTAAGGCGGGAAAGGCC
GACCAATAAGTAGTCGAAACTCCTTATAGCCCTCAGTCTTTTTACTAGAG
CTGGTGGTGAAGGCCGTGATCTATCCCTGTTTTAAAGGTATCTGGGTAAC
ACAGGCAAGCAAACTGTTTCGTTTCATGCCAACCATGGGCAATCCGCACC
CGCTCAGCGATTGTACTAAAGGCCCACGACCCCGCTCCACTCGGATTTCA
CGGATCGCTCTTCACCCTTCAATTGCTGTTGAAAAGAAAAGGGATCAGGG
TATTGCTGGAGCAACTGTCCCTGGGGGTAGTGAGGACTGTGTACAACGAC
GAAGGAAGGCAATCGCTGGGTCAAGAATGGGGTCTACGGACTCTCCAGTT
TTGAAAAACGTTAGTCGGAACAAAGCTCCCATTTCCTCCTCCCCAACCAT
CTCTACCCCCCCAGCCCCCCGCAAGAAGCGTGGGCGACCCACTAATGAGG
AACGACTTCGTCGTGCGCGTGACCTTGCCCTCAAACACGGCTGGAACCCC
GACATAGCTTTCCCAAATGGAGTGGGGGATGGATTGACTACACTGGAGCG
GTCGGTTGCGACGAGCAGAGAGCGTGCTCCCCCACCTCCCTCAGTCAGAA
GGATCGCAAGCCCTCGCGTGGTGCGTGAGCGTCCGCTTGATGAAAGCCGC
AAGCTACCCGTCCACTTTGCTGGAGATGATCCAAGTGCAGTTATGGTCAA
GGTTTCCGTTGCGGATCCCTCCTCCGTGGAATACGCTGAGGCGGTGGAAT
CCCTAGAGGCACTCACCGCATGCAATAACGATGAAAGGGATGGAACTAGA
CCAAGAGTTGGGGGTGGAGGGTTAGTACAATCTAACATCACTGCAATATC
TCTGAACCCTTTCACAGGCCTGGTGAGCTCAGACGCCTCACGTGGTGCAA
ACTACTCCCGCAGAGGCAGGACAATTGACCCTGACTCGGACATCACCACA
GCTCCAGTAGGTGAGGTTCCCATTCCTTCATTCTCAACTTGCCGCTGGAG
AAGCAGCATTCCTGGGAGTGTGGGTGTCGATGGGGTGAGCGGTTGGGAGG
GTGCGAGGGAAAACAAGGGACGAGGACGCAACATTGATGGCCGATCGAAG
AGACTTGGATTGGGGGGCGTGTCTAGGAGAGAAAGGGTTGGGGATAAAAA
TCAGAACGGGGGGTTTCTTGAGATTCTTGCAACTGGCCCTATCAGGTCTT
CTGATGTGGTGCAGGGATCTGAGTATGATATGGACGATGAGGATGAAGAT
TTTCTCATGCAGGTCACCAAGAAATTGCTGAGGGGGGAAGGGGTGGGGCA
CAGGTGTGGCAGCAGGGGTTCTGGTTATGGTGGAGGAGGAAGGAGGCCAA
GTCAGGGTGGTAAGGCTTTCGTTGAGGGCTGGGGTGGTGTGGTGGCAACC
ACACCAGTAGGGAGAAGAAGTTTAGCTAATTCAATTGGGGATCCGAGGAG
CAGCAGTAAAGGAGGTGATATGGATGGCATTTTGCCTGTTGAGGGGAGGA
AGAGAAGTGAAAAGTCGGGCTTGGTGTTGAGCAGAAGCTTGTTTGAGAGC
ATGATAGAGCGTCTGGAGCGTCAGGACTTTCTAAATGGGCAGGTGAATGT
GGGCATTGGAATAGGATATGTGTATTGGATGACCATCTACAAATATGTTT
GTTTCTGTGTAGGCATGTGGGGGGGGGGGAAGAGTAAGGGTTAGGTATGT
TTCATCACTTCTTACATTCCTCCAGGCAAGGTTTTGAAAGATCGTTTGTC
GTATGCAATGCTCTCCTTAAGAGTTCAGGTTAGAGTTGTGTCAAAACCAG
GATGAGATACTCTTTTGTGATTGCGATGCGCTTTTTACTCTGTTATTCAA
GCAAGATCACAGCTGTACCTCCTTGAAAGCTCTGTCTTAAACTGTCAACC
CCAGCCGTTGGATTCGCGGATTGACAGATTTTGTTTGATACATTGATGTT
TTCCCAGATATTTCCCAGTGACTAACTTGACATTTTTTTGGAGGCACCTT
TTTTTGCCTCCAAATTTATTTGCAGTGAGGGTCTTATTTTGGGGTTGTAA
GCTCTATAATAGAATTTGAAAATGATACACCCTGTGTACAAGAGGAATGA
ATGGGGGACTCTAGACAAAATGAACATGCGATATTCCGAAGCTTTCGATG
TTTTGGAATATTTCCCAAGGGGGGAGGGGGATGGGTCAAGACCAAAGAGG
CAGGTGGTCTGTTAAACACAGATGTACAATATTTCAAGCTTACAAGCTTA
CTGGCAACAACCGAAGGCAAAATGAATGCAGATACCAGTCATCGATATTC
AACTCCTCAAGGCCTTTGTTGTTCCAATCACCTCCTCTCTGTATTCCATT
TAACACTACCCCTTCCTTTCCTGCCTTCCTACACAACAGGATCAAAGCCT
CTATAAGGAGACAATTCGTCTTGGAAAGGAGCATGGAGAGTATGCAATTC
GCTGTGCAGACCTGATTTGCGAGGCAGACGCCTTCCTGGCCACTTCCTTC
GCAGAAAATGGCATGCCGGGGGGGGGGGATGAAGACAAAAGTGCGGGCAG
CGGTGTCCGTCATGAAAGTGGCCAATTCAGCCTCAGAAATGGTAAAGCTA
GGACAGGGAAAAGGGAGAGGTGGCAATCCATTAAAACTACTGGTGCTTTT
TGTGGTGGGGACGGGGGGAGAGGTAGGACCAGTGGTGACAAATTGGAGGG
AGATGGTGCAGCAGGGTCAGCTAGTGGAACAGTGATGGAAGGTGAAGGGA
TTGGGGGCAGCAGCAGCGGGGTTTGTTTTGGTGAAGGC
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Coding sequence (CDS) from alignment at C-tenellus_contig8266:166..3053-

>mRNA_C-tenellus_contig8266.1.1 ID=mRNA_C-tenellus_contig8266.1.1|Name=mRNA_C-tenellus_contig8266.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1866bp|location=Sequence derived from alignment at C-tenellus_contig8266:166..3053- (Choristocarpus tenellus KU2346)
ATGCCAACCATGGGCAATCCGCACCCGCTCAGCGATTGTACTAAAGGCCC
ACGACCCCGCTCCACTCGGATTTCACGGATCGCTCTTCACCCTTCAATTG
CTGTTGAAAAGAAAAGGGATCAGGGTATTGCTGGAGCAACTGTCCCTGGG
GGTAGTGAGGACTGTGTACAACGACGAAGGAAGGCAATCGCTGGGTCAAG
AATGGGGTCTACGGACTCTCCAGTTTTGAAAAACGTTAGTCGGAACAAAG
CTCCCATTTCCTCCTCCCCAACCATCTCTACCCCCCCAGCCCCCCGCAAG
AAGCGTGGGCGACCCACTAATGAGGAACGACTTCGTCGTGCGCGTGACCT
TGCCCTCAAACACGGCTGGAACCCCGACATAGCTTTCCCAAATGGAGTGG
GGGATGGATTGACTACACTGGAGCGGTCGGTTGCGACGAGCAGAGAGCGT
GCTCCCCCACCTCCCTCAGTCAGAAGGATCGCAAGCCCTCGCGTGGTGCG
TGAGCGTCCGCTTGATGAAAGCCGCAAGCTACCCGTCCACTTTGCTGGAG
ATGATCCAAGTGCAGTTATGGTCAAGGTTTCCGTTGCGGATCCCTCCTCC
GTGGAATACGCTGAGGCGGTGGAATCCCTAGAGGCACTCACCGCATGCAA
TAACGATGAAAGGGATGGAACTAGACCAAGAGTTGGGGGTGGAGGGTTAG
TACAATCTAACATCACTGCAATATCTCTGAACCCTTTCACAGGCCTGGTG
AGCTCAGACGCCTCACGTGGTGCAAACTACTCCCGCAGAGGCAGGACAAT
TGACCCTGACTCGGACATCACCACAGCTCCAGTAGGTGAGGTTCCCATTC
CTTCATTCTCAACTTGCCGCTGGAGAAGCAGCATTCCTGGGAGTGTGGGT
GTCGATGGGGTGAGCGGTTGGGAGGGTGCGAGGGAAAACAAGGGACGAGG
ACGCAACATTGATGGCCGATCGAAGAGACTTGGATTGGGGGGCGTGTCTA
GGAGAGAAAGGGTTGGGGATAAAAATCAGAACGGGGGGTTTCTTGAGATT
CTTGCAACTGGCCCTATCAGGTCTTCTGATGTGGTGCAGGGATCTGAGTA
TGATATGGACGATGAGGATGAAGATTTTCTCATGCAGGTCACCAAGAAAT
TGCTGAGGGGGGAAGGGGTGGGGCACAGGTGTGGCAGCAGGGGTTCTGGT
TATGGTGGAGGAGGAAGGAGGCCAAGTCAGGGTGGTAAGGCTTTCGTTGA
GGGCTGGGGTGGTGTGGTGGCAACCACACCAGTAGGGAGAAGAAGTTTAG
CTAATTCAATTGGGGATCCGAGGAGCAGCAGTAAAGGAGGTGATATGGAT
GGCATTTTGCCTGTTGAGGGGAGGAAGAGAAGTGAAAAGTCGGGCTTGGT
GTTGAGCAGAAGCTTGTTTGAGAGCATGATAGAGCGTCTGGAGCGTCAGG
ACTTTCTAAATGGGCAGGATCAAAGCCTCTATAAGGAGACAATTCGTCTT
GGAAAGGAGCATGGAGAGTATGCAATTCGCTGTGCAGACCTGATTTGCGA
GGCAGACGCCTTCCTGGCCACTTCCTTCGCAGAAAATGGCATGCCGGGGG
GGGGGGATGAAGACAAAAGTGCGGGCAGCGGTGTCCGTCATGAAAGTGGC
CAATTCAGCCTCAGAAATGGTAAAGCTAGGACAGGGAAAAGGGAGAGGTG
GCAATCCATTAAAACTACTGGTGCTTTTTGTGGTGGGGACGGGGGGAGAG
GTAGGACCAGTGGTGACAAATTGGAGGGAGATGGTGCAGCAGGGTCAGCT
AGTGGAACAGTGATGGAAGGTGAAGGGATTGGGGGCAGCAGCAGCGGGGT
TTGTTTTGGTGAAGGC
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