mRNA_C-tenellus_contig8253.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8253.1.1
Unique NamemRNA_C-tenellus_contig8253.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8253.1.1 vs. uniprot
Match: W4GGJ8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGJ8_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.470e-38
Identity = 58/105 (55.24%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    7 ECILQQDNAPIHVSKVTKEWFQEHDIHVLEWPPKSSDLNPMDNLWGIMAHKVYAHGKQYSSCFELMECAKKAWDNIEVETMEKLVSSMTKRCIQVIERKGAKTSY 321
            ECI Q DNA IH SK TKE+  EH++HV++WP KS DLNP++N+WG++A  VYAHG+Q++S  EL+    KAWD I  + ++KL+ SM KRC+ V+E KG+KT Y
Sbjct:  145 ECIFQHDNASIHASKETKEFLNEHNVHVMDWPAKSPDLNPIENIWGVLARAVYAHGRQFASKNELIAAILKAWDGIGQDLIDKLLKSMQKRCVSVLELKGSKTKY 249          
BLAST of mRNA_C-tenellus_contig8253.1.1 vs. uniprot
Match: A0A6A5AIH4_9STRA (DDE_3 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AIH4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 9.890e-37
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 GGECILQQDNAPIHVSKVTKEWFQEHDIHVLEWPPKSSDLNPMDNLWGIMAHKVYAHGKQYSSCFELMECAKKAWDNIEVETMEKLVSSMTKRCIQVIERKGAKTSY 321
            G ECI QQDNA IH S  TKE+ + H++ V+EWP KS DLNP++N+WG++A  VYAHG+Q++S  +L+    KAWD I  + +EKL+ SM KRCI V+E +G KT Y
Sbjct:  112 GRECIFQQDNASIHGSTETKEFLEAHNVRVMEWPAKSPDLNPIENMWGVLARAVYAHGRQFASKTDLIAAILKAWDEIGQDLIEKLLRSMQKRCISVLELEGGKTKY 218          
BLAST of mRNA_C-tenellus_contig8253.1.1 vs. uniprot
Match: A0A6A4Z4M8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z4M8_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.940e-36
Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 GGECILQQDNAPIHVSKVTKEWFQEHDIHVLEWPPKSSDLNPMDNLWGIMAHKVYAHGKQYSSCFELMECAKKAWDNIEVETMEKLVSSMTKRCIQVIERKGAKTSY 321
            G ECI QQDNA IH SK TKE+ + H++ V+EWP KS DLNP++N+WG++A  VYAHG+Q++S   L+    KAWD I  + +EKL+ SM KRCI V+E KG KT Y
Sbjct:  226 GRECIFQQDNASIHGSKETKEFLEAHNVRVMEWPAKSPDLNPIENMWGVLARAVYAHGRQFASKTGLIAAILKAWDEIGQDLIEKLLRSMQKRCISVLELKGGKTKY 332          
BLAST of mRNA_C-tenellus_contig8253.1.1 vs. uniprot
Match: A0A6A4Z9M4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9M4_9STRA)

HSP 1 Score: 125 bits (315), Expect = 7.030e-33
Identity = 51/107 (47.66%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    1 GGECILQQDNAPIHVSKVTKEWFQEHDIHVLEWPPKSSDLNPMDNLWGIMAHKVYAHGKQYSSCFELMECAKKAWDNIEVETMEKLVSSMTKRCIQVIERKGAKTSY 321
            G +C+ Q DNA IH S+ TK +  +H + V+EWP KS DLNP++N+WGI+A  VYAHG+Q+++  +L+    KAWD +    +E L+ SM  RC+ V+E KG KT Y
Sbjct:  226 GRDCVFQHDNASIHASRETKAFLSDHGVRVMEWPAKSPDLNPIENMWGILARAVYAHGRQFATKIDLVAAISKAWDEVAQNLIENLLKSMPNRCMSVLELKGGKTKY 332          
BLAST of mRNA_C-tenellus_contig8253.1.1 vs. uniprot
Match: R7QFW9_CHOCR (DDE_3 domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QFW9_CHOCR)

HSP 1 Score: 124 bits (310), Expect = 7.330e-33
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   16 LQQDNAPIHVSKVTKEWFQEHDIHVLEWPPKSSDLNPMDNLWGIMAHKVYAHGKQYSSCFELMECAKKAWDNIEVETMEKLVSSMTKRCIQVIERKGAKTSY 321
              QD A +H +    EWF+E ++HV++WP KS DLNP++NLWGI+A KVYAH +Q+++  EL+EC    W+NI  ET++KLV SM KRC      KG  T Y
Sbjct:  154 FMQDGAAVHRANCVYEWFEEEEVHVMDWPAKSPDLNPIENLWGILARKVYAHERQFNNIDELLECIMDCWENINTETLDKLVGSMQKRCFDCAMAKGGPTKY 255          
BLAST of mRNA_C-tenellus_contig8253.1.1 vs. uniprot
Match: R7Q5P2_CHOCR (DDE_3 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5P2_CHOCR)

HSP 1 Score: 121 bits (303), Expect = 1.900e-32
Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 GGECILQQDNAPIHVSKVTKEWFQEHDIHVLEWPPKSSDLNPMDNLWGIMAHKVYAHGKQYSSCFELMECAKKAWDNIEVETMEKLVSSMTKRCIQVIERKGAKTSY 321
            G      QD A +H +    EWF+E ++HV++WP KS DLNP++NLW I+A KVYAH +Q+++  EL+EC    W+NI  ET++KL+ SM KRC      KG  T Y
Sbjct:   91 GSSWTFMQDGAAVHRANCVYEWFEEEEVHVMDWPAKSPDLNPIENLWEILARKVYAHERQFNNIDELLECIMDCWENINTETLDKLLGSMQKRCFYCAMAKGGPTKY 197          
BLAST of mRNA_C-tenellus_contig8253.1.1 vs. uniprot
Match: H3G9W0_PHYRM (DDE_3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9W0_PHYRM)

HSP 1 Score: 121 bits (303), Expect = 2.060e-32
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    1 GGECILQQDNAPIHVSKVTKEWFQEHDIHVLEWPPKSSDLNPMDNLWGIMAHKVYAHGKQYSSCFELMECAKKAWDNIEVETMEKLVSSMTKRCIQVIERKGAKTSY 321
            G + + QQDNA IH S+ TK +F+E  + V++WP +S DLNP++NLW IM+  VY +G+QY S   L +    AWDNI  ET+  L++ M +RCI+VIERKG K  Y
Sbjct:   94 GVDFVFQQDNAAIHTSRETKAFFEEQGVQVMDWPARSPDLNPIENLWVIMSRDVYRNGRQYDSVTSLTKALHTAWDNISAETISTLINFMPRRCIEVIERKGNKAHY 200          
BLAST of mRNA_C-tenellus_contig8253.1.1 vs. uniprot
Match: H3G5W4_PHYRM (DDE_3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5W4_PHYRM)

HSP 1 Score: 119 bits (299), Expect = 2.520e-32
Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 GGECILQQDNAPIHVSKVTKEWFQEHDIHVLEWPPKSSDLNPMDNLWGIMAHKVYAHGKQYSSCFELMECAKKAWDNIEVETMEKLVSSMTKRCIQVIERKGAKTSY 321
            G + I QQDNA IH SK TKE+F E DI +L+WP KS DLNP++NLW IM+ +VYA+G+Q+ S  +L      AW++I    +  L+ SM +RCI+V+++KG KT Y
Sbjct:   51 GIDFIFQQDNASIHASKRTKEFFSEQDIRLLDWPSKSPDLNPIENLWSIMSRRVYANGRQFDSVPQLKAALFAAWESIPHALLMSLIESMPRRCIEVLDKKGNKTHY 157          
BLAST of mRNA_C-tenellus_contig8253.1.1 vs. uniprot
Match: A0A225VGS8_9STRA (Transposase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGS8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.040e-32
Identity = 58/108 (53.70%), Postives = 78/108 (72.22%), Query Frame = 1
Query:    1 GGECILQQDNAPIHVSKVTKEWFQEHDIHVLEWPPKSSDLNPMDNLWGIMAHKVYAHGK-QYSSCFELMECAKKAWDNIEVETMEKLVSSMTKRCIQVIERKGAKTSY 321
            G E I QQDNA IH S+ T E+F+E DI V++WP +S DLNP++NLW I++  VY +GK QY+S F+L   A +AWD ++ E +EKLV SM KR ++V+E KG KT Y
Sbjct:  210 GTEYIFQQDNASIHTSECTTEFFEEQDITVMKWPARSPDLNPIENLWAILSRIVYDNGKKQYTSVFDLRVAALQAWDLVDQEVLEKLVDSMPKRLVEVLEMKGGKTHY 317          
BLAST of mRNA_C-tenellus_contig8253.1.1 vs. uniprot
Match: A0A016SQ41_9BILA (DDE_3 domain-containing protein n=1 Tax=Ancylostoma ceylanicum TaxID=53326 RepID=A0A016SQ41_9BILA)

HSP 1 Score: 118 bits (295), Expect = 4.540e-32
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   16 LQQDNAPIHVSKVTKEWFQEHDIHVLEWPPKSSDLNPMDNLWGIMAHKVYAHGKQYSSCFELMECAKKAWDNIEVETMEKLVSSMTKRCIQVIERKGAKTSY 321
             QQDNA +HV+  TK WF  H I +++WP  S DLNP++NLWGI+A +VYA+ +QYSS  EL    ++AWD+IE  T++ LV  M +R  +VI  KG  T Y
Sbjct:   28 FQQDNATVHVASSTKSWFNRHHIRLMDWPACSPDLNPIENLWGILARRVYANARQYSSVAELETAVRQAWDSIESSTLKNLVDGMQRRIFEVIYNKGGPTKY 129          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8253.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GGJ8_9STRA2.470e-3855.24Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A5AIH4_9STRA9.890e-3754.21DDE_3 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6A4Z4M8_9STRA1.940e-3656.07Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4Z9M4_9STRA7.030e-3347.66Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
R7QFW9_CHOCR7.330e-3350.00DDE_3 domain-containing protein n=2 Tax=Chondrus c... [more]
R7Q5P2_CHOCR1.900e-3246.73DDE_3 domain-containing protein n=1 Tax=Chondrus c... [more]
H3G9W0_PHYRM2.060e-3249.53DDE_3 domain-containing protein n=1 Tax=Phytophtho... [more]
H3G5W4_PHYRM2.520e-3250.47DDE_3 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A225VGS8_9STRA4.040e-3253.70Transposase (Fragment) n=1 Tax=Phytophthora megaka... [more]
A0A016SQ41_9BILA4.540e-3250.00DDE_3 domain-containing protein n=1 Tax=Ancylostom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8253contigC-tenellus_contig8253:48..371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog164328.Phyra71860
PFAMsDDE_3,HTH_Tnp_Tc3_2
Model size324
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.37e-33
EggNOG OGs2CEW8@1|root,2S3HB@2759|Eukaryota
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790090.8264394-CDS-C-tenellus_contig8253:47..3711680790090.8264394-CDS-C-tenellus_contig8253:47..371Choristocarpus tenellus KU2346CDSC-tenellus_contig8253 48..371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8253.1.1prot_C-tenellus_contig8253.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8253 48..371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8253.1.1

>prot_C-tenellus_contig8253.1.1 ID=prot_C-tenellus_contig8253.1.1|Name=mRNA_C-tenellus_contig8253.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=108bp
GGECILQQDNAPIHVSKVTKEWFQEHDIHVLEWPPKSSDLNPMDNLWGIM
AHKVYAHGKQYSSCFELMECAKKAWDNIEVETMEKLVSSMTKRCIQVIER
KGAKTSY*
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mRNA from alignment at C-tenellus_contig8253:48..371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8253.1.1 ID=mRNA_C-tenellus_contig8253.1.1|Name=mRNA_C-tenellus_contig8253.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=324bp|location=Sequence derived from alignment at C-tenellus_contig8253:48..371+ (Choristocarpus tenellus KU2346)
GGTGGCGAATGCATTCTACAGCAGGACAATGCACCCATCCACGTCTCCAA GGTGACGAAAGAATGGTTCCAGGAGCATGATATCCATGTACTGGAGTGGC CACCGAAATCCTCCGATCTCAATCCAATGGACAACCTCTGGGGGATCATG GCTCACAAAGTTTATGCCCATGGAAAACAGTACTCATCATGCTTCGAGCT GATGGAGTGTGCGAAGAAAGCTTGGGACAACATTGAGGTTGAAACTATGG AAAAACTGGTCTCATCCATGACCAAACGTTGCATCCAAGTAATTGAAAGA AAAGGAGCTAAAACATCTTATTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig8253:48..371+

>mRNA_C-tenellus_contig8253.1.1 ID=mRNA_C-tenellus_contig8253.1.1|Name=mRNA_C-tenellus_contig8253.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=324bp|location=Sequence derived from alignment at C-tenellus_contig8253:48..371+ (Choristocarpus tenellus KU2346)
GGTGGCGAATGCATTCTACAGCAGGACAATGCACCCATCCACGTCTCCAA
GGTGACGAAAGAATGGTTCCAGGAGCATGATATCCATGTACTGGAGTGGC
CACCGAAATCCTCCGATCTCAATCCAATGGACAACCTCTGGGGGATCATG
GCTCACAAAGTTTATGCCCATGGAAAACAGTACTCATCATGCTTCGAGCT
GATGGAGTGTGCGAAGAAAGCTTGGGACAACATTGAGGTTGAAACTATGG
AAAAACTGGTCTCATCCATGACCAAACGTTGCATCCAAGTAATTGAAAGA
AAAGGAGCTAAAACATCTTATTAA
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