mRNA_C-tenellus_contig8244.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8244.1.1
Unique NamemRNA_C-tenellus_contig8244.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8244.1.1 vs. uniprot
Match: D7G1B5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B5_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 7.060e-40
Identity = 69/95 (72.63%), Postives = 82/95 (86.32%), Query Frame = 1
Query:   13 RWERSGEGRARLYVPAIGAFLGAPTIALVLLVPGFYSSMFFLFVEYLVAESWFGPAISVLQNALPPRARGVGVGTYSFLTTVAGSFITYLLGVIL 297
            RWE++G+ RAR+Y+PAIGA LGAPT  LV++ P FY +MFFLFVEYLVAE WFGPAISVLQ ALP R RGVG+G YSF TT+AGSF+TY++GVIL
Sbjct:  321 RWEKAGQHRARMYIPAIGALLGAPTFFLVIVTPNFYGAMFFLFVEYLVAECWFGPAISVLQKALPARVRGVGIGYYSFFTTIAGSFMTYIVGVIL 415          
BLAST of mRNA_C-tenellus_contig8244.1.1 vs. uniprot
Match: A0A7S2XUC5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUC5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.440e-24
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   16 WERSGEGRARLYVPAIGAFLGAPTIALVLLVPGFYSSMFFLFVEYLVAESWFGPAISVLQNALPPRARGVGVGTYSFLTTVAGSFITYLLGVI 294
            WE+SG+  AR+++PAIGA    P + + +L   FY SM  LF EYL AE WFGP +SVLQ+AL PR RG+G+  Y+F TT+ GS ++Y++GVI
Sbjct:  324 WEKSGQRNARVWIPAIGAIASLPFMMMCVLSGNFYLSMAGLFFEYLFAECWFGPIMSVLQSALSPRVRGIGIAAYTFTTTMLGSLMSYVMGVI 416          
BLAST of mRNA_C-tenellus_contig8244.1.1 vs. uniprot
Match: A0A836CG38_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG38_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.580e-20
Identity = 49/93 (52.69%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   13 RWERSGEGRARLYVPAIGAFLGAPTIALVLLVPGFYSSMFFLFVEYLVAESWFGPAISVLQNALPPRARGVGVGTYSFLTTVAGSFITYLLGV 291
            +W  SG+ RA L VPAIGA    P +AL L  P F  SM  LF+EYL AE WFGPA+S LQ ALP  AR  GV  ++  TT+AGS   + +GV
Sbjct:  303 KWGASGQRRANLLVPAIGAAAAVPALALALYAPSFGLSMAGLFLEYLAAECWFGPAMSALQGALPAGARATGVAAFTLATTLAGSAAAWAVGV 395          
BLAST of mRNA_C-tenellus_contig8244.1.1 vs. uniprot
Match: A0A7S2CKQ1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CKQ1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.970e-19
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   37 RARLYVPAIGAFLGAPTIALVLLVPGFYSSMFF-LFVEYLVAESWFGPAISVLQNALPPRARGVGVGTYSFLTTVAGSFITYLLG 288
            +A  YVPAIG  LG P IA+  L   FY SM   LF+EYLVAE WFGP +S LQ++LPPR RG+G+    F  T  GS ++Y +G
Sbjct:   70 KANYYVPAIGCLLGCPFIAICCLSSNFYVSMLCGLFLEYLVAECWFGPYMSALQSSLPPRVRGLGISVMMFSATFFGSLMSYAIG 154          
BLAST of mRNA_C-tenellus_contig8244.1.1 vs. uniprot
Match: A0A7S2Y1D3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1D3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.890e-18
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   13 RWERSGEGRARLYVPAIGAFLGAPTIALVLLVPGFYSSMFFLFVEYLVAESWFGPAISVLQNALPPRARGVGVGTYSFLTTVAGSFITYLLG 288
            RWE SG   AR++VPA+G+ L  P + L +    F+ +M  L+ E+L AE WFGP +SV+Q+ LPPR    GV  ++ L+T  GS  T+++G
Sbjct:  296 RWEMSGGRHARVWVPALGSLLACPFVVLTMAASNFHVAMMGLYFEFLFAECWFGPTMSVIQSTLPPRLFATGVSVFACLSTFMGSLATWVMG 387          
BLAST of mRNA_C-tenellus_contig8244.1.1 vs. uniprot
Match: A0A835YUX0_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.100e-17
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = 1
Query:   13 RWERSGEGRARLYVPAIGAFLGAPTIALVLLVPGFYSSMFFLFVEYLVAESWFGPAISVLQNALPPRARGVGVGTYSFLTTVAGSFITYLLG 288
            RW  +G+ RA L +P  GA    P +A  L  P F  SM  LF EYL AE W GPA+S LQ ALPP ARG G+G ++  T +AGS   + +G
Sbjct:  306 RWAAAGQRRAYLLIPGAGAAAAVPLLAAALYAPSFGLSMAALFAEYLCAEVWSGPAVSALQGALPPGARGTGMGVFALGTGLAGSAAAWAVG 397          
BLAST of mRNA_C-tenellus_contig8244.1.1 vs. uniprot
Match: A0A7S2WU90_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU90_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.380e-17
Identity = 46/93 (49.46%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   13 RWERSGEGRARLYVPAIGAFLGAPTIALVLLVPGFYSSMFF-LFVEYLVAESWFGPAISVLQNALPPRARGVGVGTYSFLTTVAGSFITYLLG 288
            RW   G  +A  YVP IGA LG P I +  L   FY S+   LF+EYLVAE WFGP +S LQ  +PP  RG+ V T  F+ T  GS ++YL+G
Sbjct:  332 RWP--GAEKANYYVPMIGALLGIPFICICCLASDFYVSLCVGLFLEYLVAECWFGPYMSALQEGVPPTMRGLAVATMMFMATFFGSLMSYLIG 422          
BLAST of mRNA_C-tenellus_contig8244.1.1 vs. uniprot
Match: A0A7S4E4V1_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4V1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.830e-15
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 MCEARWERSGEGRARLYVPAIGAFLGAPTIALVLLVPGFYSSMFF-LFVEYLVAESWFGPAISVLQNALPPRARGVGVGTYSFLTTVAGSFITYLLGVI 294
            M   +W R+ E RAR+Y+P  G F   P +A+  L   FY S+F  LFVEYL+AE WFGP ++ +Q+AL    R + +  ++ + T  GS  +Y+LG I
Sbjct:  316 MLADKW-RAVEPRARMYLPVCGCFGSLPFMAICCLASDFYVSIFLGLFVEYLIAECWFGPVVATMQSALEADCRALAIACFTLIATFFGSLASYILGYI 413          
BLAST of mRNA_C-tenellus_contig8244.1.1 vs. uniprot
Match: A0A2R5G269_9STRA (Hexuronate transporter n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G269_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.810e-13
Identity = 40/92 (43.48%), Postives = 51/92 (55.43%), Query Frame = 1
Query:   13 RWERSGEGRARLYVPAIGAFLGAPTIALVLLVPGFYSSMFFLFVEYLVAESWFGPAISVLQNALPPRARGVGVGTYSFLTTVAGSFITYLLG 288
            RW R+ + R   +VPAI    G      VL    FY +MF L +EYL+AE WFGPAIS+LQ+ LP   RG  +  Y F+  + GS     LG
Sbjct:  384 RWRRT-DPRGAAWVPAIAGACGFIPFLGVLFADNFYLAMFSLMLEYLIAEGWFGPAISILQSRLPGTVRGTSISIYMFVAGLVGSLAPSALG 474          
BLAST of mRNA_C-tenellus_contig8244.1.1 vs. uniprot
Match: A0A7S2AAR9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AAR9_TRICV)

HSP 1 Score: 70.9 bits (172), Expect = 8.710e-13
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   13 RWERSGEGRARLYVPAIGAFLGAPTIALVLLVPGFYSSMFFLFVEYLVAESWFGPAISVLQNALPPRARGVGVGTYSFLTTVAGSFITYLLGVI 294
            RW   GE   RL VP +G+ L AP   L      F  +M +L +EYLVAE WFGP +SVLQ+++ PR  G   G ++ LT   G+    LLGV+
Sbjct:  126 RWGLRGERAGRLAVPIVGSTLAAPAWYLTATSGTFEGAMAWLAIEYLVAECWFGPVVSVLQSSVGPRRGGTAQGMFT-LTGAVGNLAPSLLGVL 218          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8244.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1B5_ECTSI7.060e-4072.63MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2XUC5_9STRA5.440e-2452.69Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CG38_9STRA2.580e-2052.69Major facilitator superfamily domain-containing pr... [more]
A0A7S2CKQ1_9STRA2.970e-1952.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2Y1D3_9STRA5.890e-1843.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YUX0_9STRA2.100e-1747.83Major facilitator superfamily domain-containing pr... [more]
A0A7S2WU90_9STRA4.380e-1749.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4E4V1_9STRA8.830e-1541.41Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A2R5G269_9STRA2.810e-1343.48Hexuronate transporter n=1 Tax=Hondaea fermentalgi... [more]
A0A7S2AAR9_TRICV8.710e-1343.62Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8244contigC-tenellus_contig8244:132..739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G1B5
PFAMsMFS_1
Model size297
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons2
Evalue1.16e-40
EggNOG OGsCOG0477@1|root,KOG1330@2759|Eukaryota
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-17_003910.1
Descriptionsphingolipid transporter activity
Cds size297
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790090.1227202-CDS-C-tenellus_contig8244:131..3491680790090.1227202-CDS-C-tenellus_contig8244:131..349Choristocarpus tenellus KU2346CDSC-tenellus_contig8244 132..349 +
1680790090.1363447-CDS-C-tenellus_contig8244:660..7391680790090.1363447-CDS-C-tenellus_contig8244:660..739Choristocarpus tenellus KU2346CDSC-tenellus_contig8244 661..739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8244.1.1prot_C-tenellus_contig8244.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8244 132..739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8244.1.1

>prot_C-tenellus_contig8244.1.1 ID=prot_C-tenellus_contig8244.1.1|Name=mRNA_C-tenellus_contig8244.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=99bp
MCEARWERSGEGRARLYVPAIGAFLGAPTIALVLLVPGFYSSMFFLFVEY
LVAESWFGPAISVLQNALPPRARGVGVGTYSFLTTVAGSFITYLLGVIL
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mRNA from alignment at C-tenellus_contig8244:132..739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8244.1.1 ID=mRNA_C-tenellus_contig8244.1.1|Name=mRNA_C-tenellus_contig8244.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=608bp|location=Sequence derived from alignment at C-tenellus_contig8244:132..739+ (Choristocarpus tenellus KU2346)
ATGTGTGAGGCAAGGTGGGAGAGGAGTGGTGAAGGACGTGCACGCTTGTA TGTTCCTGCAATAGGTGCTTTCCTGGGTGCGCCAACGATAGCATTGGTTC TGCTGGTACCTGGGTTCTATTCATCAATGTTCTTCCTGTTTGTGGAGTAC CTTGTCGCAGAGTCCTGGTTCGGTCCAGCCATCTCGGTCCTACAGAATGC GCTGCCTCCTCGTGCCCGGTAAGCGGTTCAAAACCACTCCACAGTTGTGT AGGGGAGTATTTGTACTAGTAAATAGTGATAATGTAGGTGAATTTTGAAT TATGTGCTTTCAAGTCTGATGTTTGTTGACACTTCTGTGTGTACCTCGTG GTGCGATAATAAGATACAAAAAACAAAAAAAATTACGGGTTGATTTTTCG TTTTGATTTTTGTAATTCTATATATACAGCAGTAGTACACTTGTGTTTGT TTCTTTTAAAATTGAGAACAGGTGGTGAAGCAACCTTTGACAAGTGTCTG AGTCGATCGCCCTGCATGCTTTCTCGCAGGGGAGTGGGTGTGGGTACCTA CAGCTTTCTTACAACTGTGGCTGGGTCGTTCATCACATACCTGCTGGGAG TGATCCTG
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Coding sequence (CDS) from alignment at C-tenellus_contig8244:132..739+

>mRNA_C-tenellus_contig8244.1.1 ID=mRNA_C-tenellus_contig8244.1.1|Name=mRNA_C-tenellus_contig8244.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=297bp|location=Sequence derived from alignment at C-tenellus_contig8244:132..739+ (Choristocarpus tenellus KU2346)
ATGTGTGAGGCAAGGTGGGAGAGGAGTGGTGAAGGACGTGCACGCTTGTA
TGTTCCTGCAATAGGTGCTTTCCTGGGTGCGCCAACGATAGCATTGGTTC
TGCTGGTACCTGGGTTCTATTCATCAATGTTCTTCCTGTTTGTGGAGTAC
CTTGTCGCAGAGTCCTGGTTCGGTCCAGCCATCTCGGTCCTACAGAATGC
GCTGCCTCCTCGTGCCCGGGGAGTGGGTGTGGGTACCTACAGCTTTCTTA
CAACTGTGGCTGGGTCGTTCATCACATACCTGCTGGGAGTGATCCTG
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