mRNA_C-tenellus_contig8218.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8218.1.1
Unique NamemRNA_C-tenellus_contig8218.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8218.1.1 vs. uniprot
Match: D8LL32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL32_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 6.010e-30
Identity = 155/544 (28.49%), Postives = 222/544 (40.81%), Query Frame = 3 
Query:  582 VRRYLRNEDPLYVRRNLDKLCQGDLENLVEGDIVEVARRCQSERKEGGTGKVVRVLPQHFYDIKYMVSGGTERGVDGCFVRRMTMGEGSRRSSTPRCTFCNSFVTDCTCYGAWRNSPDNPRNTDRESW------------EMPDQAHGKQPEPLGSRKVQQERQMXXXXXXX--EQGHLGREEEGAGRDGEANRLQMQRKNEGQSQDSGEIEGGPQGRCGGEERTDSRRMGVEHRGSS------HEGLV---DAPKQAEAQTQSAIGEGNLCNAQPQLMHPIQSDRC-GEKPQEQDIERVDSQEFVGAENEKAVGTSECRGVTEEHEEQQQKKQPQGEVEEAKEEDSWSRGVHNTQDFSKGAVVGDPMDVSINNKSVEAHGDVGPLRGASSNLGTLKDASGIGNQSTGEARSNSRRVEKEGMSEEDLEGARGKEGSGEHDKGREVAVQGKGVGEKPWRPCVGDLVEVERRTSNGRRQFGGIGRVLYVEPSPEGRIDVRYHVEHVREKGIDPRHVHPAKIGEGGRKRQTMGRCKIPGCSSFILHC 2141
            VR YLR+ DPL++R NL KL  G L  L  GD V VARRC+ E KEGG G V+ VLP++FYD+KY+  GG E GVD CFV ++ +G   RR  T RC  CNSF ++CTC    R                           +P    G    P  S +  +E  +         E+ H  +    AG   EA   +  R +  + Q  G + G P    G     + ++  V+ R SS       +G+    D   + +       G G +     +      ++   G++   Q  +R D     G ++ +A+ T   +G    H+ +     P          D+ ++G        +G VV      S N+  VE  G VG                G+G  S G  R      E +  S  D+                             WRP   +LVEV RR + G  + GG  RV+ V+P+  G +DVR+ VE   E+ IDP +V PA + +   KR T GRC    C S  + C
Sbjct:    4 VRCYLRDGDPLFIRSNLSKLEAGTLTRLAVGDTVRVARRCRGENKEGGQGIVLAVLPEYFYDVKYV--GGVEYGVDACFVEKIKLGSTKRRGGTSRCGTCNSFESECTCQAPSRGGRSAXXXXXXXXXXXXXXXXXXSMSSLPSYLRGGGGSPSVSPQSPKEIAVPGGAFRRGRERAHPLKRPRPAGSSQEAKEREEARPDPPRKQAGGGVPGVPPRVWGXXXGVELKKAAVDDRSSSLQSGEGGQGMDVEDDGLPRRKVSHGDTFGSGAVPGGAGESATAAAAEGTEGDQTPPQLSKRYDKDSGGGDDDAEAIWTEHAQGS---HDREIPSHGP----------DAPAKGT-----LRRGGVVD-----SSNHDPVE--GGVG----------------GVGXGSDGNRRDPGEEEESQPSSSRDV-----------------------------WRPRKKELVEVARRMAPGMNKLGGTARVVKVDPAT-GLVDVRFVVEGGWERNIDPVYVRPATL-DMNEKRATFGRCVH--CGSLRVDC 471
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BLAST of mRNA_C-tenellus_contig8218.1.1 vs. uniprot
Match: A0A6H5K8X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X1_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.640e-26
Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 3 
Query:  582 VRRYLRNEDPLYVRRNLDKLCQGDLENLVEGDIVEVARRCQSERKEGGTGKVVRVLPQHFYDIKYMVSGGTERGVDGCFVRRMTMGEGSRRSSTPRCTFCNSFVTDCTC 908
            V+ YLR+ DPL++R NL KL  G L  L  GD V VARRC+ E KEGG G V+ VLP++FYD+KY+  GG E GVD CFV ++ +G   RR  T RC  CNSF ++CTC
Sbjct:    4 VKCYLRDGDPLFIRSNLSKLEAGTLTRLAVGDTVRVARRCRGENKEGGQGIVLAVLPEYFYDVKYV--GGVEYGVDACFVEKIKLGSTKRRGGTSRCGRCNSFESECTC 110
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8218.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL32_ECTSI6.010e-3028.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8X1_9PHAE5.640e-2655.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8218contigC-tenellus_contig8218:2418..5258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2260
Hectar predicted targeting categoryother localisation
Exons3
Cds size2085
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790088.069539-CDS-C-tenellus_contig8218:2417..38391680790088.069539-CDS-C-tenellus_contig8218:2417..3839Choristocarpus tenellus KU2346CDSC-tenellus_contig8218 2418..3839 -
1680790088.079605-CDS-C-tenellus_contig8218:4063..42021680790088.079605-CDS-C-tenellus_contig8218:4063..4202Choristocarpus tenellus KU2346CDSC-tenellus_contig8218 4064..4202 -
1680790088.0915623-CDS-C-tenellus_contig8218:4561..50851680790088.0915623-CDS-C-tenellus_contig8218:4561..5085Choristocarpus tenellus KU2346CDSC-tenellus_contig8218 4562..5085 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790088.1005042-UTR-C-tenellus_contig8218:5085..52581680790088.1005042-UTR-C-tenellus_contig8218:5085..5258Choristocarpus tenellus KU2346UTRC-tenellus_contig8218 5086..5258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8218.1.1prot_C-tenellus_contig8218.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8218 2418..5085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8218.1.1

>prot_C-tenellus_contig8218.1.1 ID=prot_C-tenellus_contig8218.1.1|Name=mRNA_C-tenellus_contig8218.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=695bp
MPESEKTLSDGSQLISAWKKDKEESTQGIHINAPLKKIKIDGDRRARYDM
VQDSLTQLTAPDNLTTGDQVIHTEESSSPECGRGKGHRQEKRLHSSIEDE
SLAMITEMREGLDSSRPSCREMTNQDFELQQGRLEYVRRYLRNEDPLYVR
RNLDKLCQGDLENLVEGDIVEVARRCQSERKEGGTGKVVRVLPQHFYDIK
YMVSGGTERGVDGCFVRRMTMGEGSRRSSTPRCTFCNSFVTDCTCYGAWR
NSPDNPRNTDRESWEMPDQAHGKQPEPLGSRKVQQERQMQQQGQGQEQGH
LGREEEGAGRDGEANRLQMQRKNEGQSQDSGEIEGGPQGRCGGEERTDSR
RMGVEHRGSSHEGLVDAPKQAEAQTQSAIGEGNLCNAQPQLMHPIQSDRC
GEKPQEQDIERVDSQEFVGAENEKAVGTSECRGVTEEHEEQQQKKQPQGE
VEEAKEEDSWSRGVHNTQDFSKGAVVGDPMDVSINNKSVEAHGDVGPLRG
ASSNLGTLKDASGIGNQSTGEARSNSRRVEKEGMSEEDLEGARGKEGSGE
HDKGREVAVQGKGVGEKPWRPCVGDLVEVERRTSNGRRQFGGIGRVLYVE
PSPEGRIDVRYHVEHVREKGIDPRHVHPAKIGEGGRKRQTMGRCKIPGCS
SFILHCNHVQPGDAFFADPPFYAPASALAGVTTKESGAGDAASRG
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mRNA from alignment at C-tenellus_contig8218:2418..5258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8218.1.1 ID=mRNA_C-tenellus_contig8218.1.1|Name=mRNA_C-tenellus_contig8218.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2841bp|location=Sequence derived from alignment at C-tenellus_contig8218:2418..5258- (Choristocarpus tenellus KU2346)
TGAGAGTTGATCGAGTGCATGACCAGGATCCCACGGTCACCACTGAGATG
TCACGGATAAGGCCTGGTGGTGCTTGTCCTTCTAATGTTGCTGAATGTGT
TCTATGGATATGACTTAATGGTTTGAGAAAAGGAGTTCGAGGAGAGGAGA
ACAGTTCAAATTCATTATTGCCAATGCCTGAGAGTGAGAAGACACTTTCT
GATGGGTCACAACTCATTTCAGCTTGGAAGAAGGACAAGGAGGAGTCCAC
GCAGGGAATTCATATCAATGCTCCTCTTAAGAAAATAAAAATCGATGGTG
ACAGACGTGCGAGATACGATATGGTCCAGGACTCTCTAACGCAATTGACT
GCACCTGATAACCTCACCACTGGTGACCAAGTCATCCATACAGAAGAGTC
AAGTTCGCCAGAATGTGGCCGAGGCAAAGGACATCGACAAGAAAAAAGAT
TGCACAGTTCTATAGAAGATGAATCCCTGGCGATGATTACAGAGATGAGA
GAGGGATTGGACTCAAGTCGACCTTCTTGTAGGGAAATGACTAACCAAGA
CTTCGAGTTGCAACAAGGAAGGCTCGAATATGTCAGACGTTACTTGCGGA
ATGAGGACCCACTTTACGTGAGAAGGAATTTGGATAAGCTTTGTCAAGGC
GATCTCGAGAATCTTGTGGAGGGAGACATTGTGGAGGTGGCAAGGAGGTG
ATGTCGCCGTAAACACCCGAAACCTTGCGAGATTGTAATGTCGCTGCTTT
TGGAAAGGGCGACGTGCACGGGTAATCTTAACCACTGTGCCATCGTCCAG
ATAATGCAAGTTTGATTGCATATTGTATGAATTAGGTCTTTAACTCCCTA
ACATTTGTCTCTGTTTTCTTTTTGGGACGGCAATGACTGTGTCGAGTTTT
CCTCTTATTCTTCTCATGGTTGTAAACCGCTCAATGAAGGGAAGTACAAC
CCAGTTCCCGCATATGTAGATCACTGGGGTCTGAAAACCTACGTAATGGC
ATTTGTGTGTGGTTTTTATGATCGATTTCCCCATACTTGTCCTGTCTGTG
CTAAAGGTGTCAGAGTGAGAGGAAGGAAGGTGGTACGGGTAAGGTTGTGA
GGGTTCTCCCACAGCACTTCTATGATATCAAATACATGGTCTCTGGTGGG
ACAGAGAGGGGCGTTGACGGGTGCTTTGTGCGGAGAATGACAATGGTAAG
GGGAGGAAGAAAGAAATGCAAATATGGCATCACACCAAGATAAGCGTACG
TGATACTGACTGGGAGGAAATGGAGGCAGACTTGGCTGTATCATCTGTTC
CGCATTAATCAAATGTAAATTATCTTGCCCCCTGCTGCACAAACCATGCA
TGTTGGTCACCCTTCTCAAGTTGACAGCTAGAAACTCCCACTGCCATTTC
CATCTCGTTGATTCCAAAGGGTGAGGGATCCCGTCGGAGTAGCACCCCAC
GGTGCACGTTTTGTAACAGTTTTGTAACGGACTGCACCTGCTATGGAGCC
TGGAGGAACTCTCCTGACAATCCGCGAAATACGGATAGGGAATCCTGGGA
GATGCCAGATCAAGCTCATGGAAAACAGCCAGAGCCACTGGGGTCCAGGA
AGGTACAGCAGGAGAGGCAAATGCAGCAGCAGGGGCAGGGACAGGAGCAG
GGACACCTCGGGAGAGAAGAGGAAGGAGCTGGGAGAGATGGGGAAGCAAA
TCGTTTGCAGATGCAACGTAAGAATGAAGGCCAGTCTCAGGACAGTGGGG
AGATAGAAGGCGGGCCTCAGGGGAGGTGTGGGGGAGAAGAGAGGACTGAT
TCCAGAAGGATGGGGGTTGAGCACCGCGGATCATCACATGAGGGCCTTGT
AGATGCTCCAAAACAGGCCGAAGCTCAGACTCAGTCTGCAATTGGAGAGG
GTAATCTTTGTAATGCACAGCCTCAGCTTATGCATCCAATCCAAAGTGAC
AGGTGTGGAGAAAAGCCCCAAGAGCAGGATATTGAGAGGGTTGACAGTCA
AGAGTTCGTAGGTGCTGAAAATGAAAAGGCGGTTGGGACATCAGAGTGTA
GGGGAGTCACCGAGGAACACGAGGAGCAGCAGCAAAAAAAACAGCCTCAG
GGAGAAGTGGAGGAGGCAAAGGAGGAGGACAGCTGGAGCAGGGGTGTGCA
CAACACGCAAGATTTCTCGAAAGGAGCAGTAGTTGGTGACCCAATGGACG
TTAGTATCAATAACAAGTCAGTTGAGGCTCATGGTGATGTGGGACCGTTA
AGAGGTGCGAGTTCGAACCTTGGAACGCTAAAGGACGCTAGTGGCATTGG
CAATCAAAGCACAGGCGAGGCGAGGAGTAACAGCAGGCGAGTTGAGAAAG
AGGGGATGAGTGAGGAGGACTTGGAAGGCGCACGAGGCAAGGAGGGTTCA
GGAGAGCACGATAAGGGCAGGGAAGTGGCCGTGCAGGGTAAGGGGGTGGG
GGAAAAGCCATGGCGCCCATGCGTTGGTGATCTGGTGGAAGTGGAACGAC
GAACCTCCAATGGGCGAAGACAGTTTGGAGGAATTGGTCGTGTGTTGTAT
GTCGAACCGAGCCCAGAAGGTAGGATAGATGTGCGCTACCATGTTGAGCA
CGTCCGGGAGAAGGGCATTGATCCCCGTCATGTTCACCCTGCCAAAATAG
GGGAAGGAGGCCGCAAGCGTCAAACTATGGGGAGGTGCAAGATCCCTGGA
TGCTCGTCGTTCATCCTGCACTGCAATCATGTCCAGCCGGGAGATGCTTT
TTTCGCAGATCCTCCCTTTTATGCACCCGCTTCAGCATTGGCAGGAGTGA
CGACCAAGGAGAGCGGGGCGGGTGATGCGGCCAGCAGAGGA
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Coding sequence (CDS) from alignment at C-tenellus_contig8218:2418..5258-

>mRNA_C-tenellus_contig8218.1.1 ID=mRNA_C-tenellus_contig8218.1.1|Name=mRNA_C-tenellus_contig8218.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=2085bp|location=Sequence derived from alignment at C-tenellus_contig8218:2418..5258- (Choristocarpus tenellus KU2346)
ATGCCTGAGAGTGAGAAGACACTTTCTGATGGGTCACAACTCATTTCAGC
TTGGAAGAAGGACAAGGAGGAGTCCACGCAGGGAATTCATATCAATGCTC
CTCTTAAGAAAATAAAAATCGATGGTGACAGACGTGCGAGATACGATATG
GTCCAGGACTCTCTAACGCAATTGACTGCACCTGATAACCTCACCACTGG
TGACCAAGTCATCCATACAGAAGAGTCAAGTTCGCCAGAATGTGGCCGAG
GCAAAGGACATCGACAAGAAAAAAGATTGCACAGTTCTATAGAAGATGAA
TCCCTGGCGATGATTACAGAGATGAGAGAGGGATTGGACTCAAGTCGACC
TTCTTGTAGGGAAATGACTAACCAAGACTTCGAGTTGCAACAAGGAAGGC
TCGAATATGTCAGACGTTACTTGCGGAATGAGGACCCACTTTACGTGAGA
AGGAATTTGGATAAGCTTTGTCAAGGCGATCTCGAGAATCTTGTGGAGGG
AGACATTGTGGAGGTGGCAAGGAGGTGTCAGAGTGAGAGGAAGGAAGGTG
GTACGGGTAAGGTTGTGAGGGTTCTCCCACAGCACTTCTATGATATCAAA
TACATGGTCTCTGGTGGGACAGAGAGGGGCGTTGACGGGTGCTTTGTGCG
GAGAATGACAATGGGTGAGGGATCCCGTCGGAGTAGCACCCCACGGTGCA
CGTTTTGTAACAGTTTTGTAACGGACTGCACCTGCTATGGAGCCTGGAGG
AACTCTCCTGACAATCCGCGAAATACGGATAGGGAATCCTGGGAGATGCC
AGATCAAGCTCATGGAAAACAGCCAGAGCCACTGGGGTCCAGGAAGGTAC
AGCAGGAGAGGCAAATGCAGCAGCAGGGGCAGGGACAGGAGCAGGGACAC
CTCGGGAGAGAAGAGGAAGGAGCTGGGAGAGATGGGGAAGCAAATCGTTT
GCAGATGCAACGTAAGAATGAAGGCCAGTCTCAGGACAGTGGGGAGATAG
AAGGCGGGCCTCAGGGGAGGTGTGGGGGAGAAGAGAGGACTGATTCCAGA
AGGATGGGGGTTGAGCACCGCGGATCATCACATGAGGGCCTTGTAGATGC
TCCAAAACAGGCCGAAGCTCAGACTCAGTCTGCAATTGGAGAGGGTAATC
TTTGTAATGCACAGCCTCAGCTTATGCATCCAATCCAAAGTGACAGGTGT
GGAGAAAAGCCCCAAGAGCAGGATATTGAGAGGGTTGACAGTCAAGAGTT
CGTAGGTGCTGAAAATGAAAAGGCGGTTGGGACATCAGAGTGTAGGGGAG
TCACCGAGGAACACGAGGAGCAGCAGCAAAAAAAACAGCCTCAGGGAGAA
GTGGAGGAGGCAAAGGAGGAGGACAGCTGGAGCAGGGGTGTGCACAACAC
GCAAGATTTCTCGAAAGGAGCAGTAGTTGGTGACCCAATGGACGTTAGTA
TCAATAACAAGTCAGTTGAGGCTCATGGTGATGTGGGACCGTTAAGAGGT
GCGAGTTCGAACCTTGGAACGCTAAAGGACGCTAGTGGCATTGGCAATCA
AAGCACAGGCGAGGCGAGGAGTAACAGCAGGCGAGTTGAGAAAGAGGGGA
TGAGTGAGGAGGACTTGGAAGGCGCACGAGGCAAGGAGGGTTCAGGAGAG
CACGATAAGGGCAGGGAAGTGGCCGTGCAGGGTAAGGGGGTGGGGGAAAA
GCCATGGCGCCCATGCGTTGGTGATCTGGTGGAAGTGGAACGACGAACCT
CCAATGGGCGAAGACAGTTTGGAGGAATTGGTCGTGTGTTGTATGTCGAA
CCGAGCCCAGAAGGTAGGATAGATGTGCGCTACCATGTTGAGCACGTCCG
GGAGAAGGGCATTGATCCCCGTCATGTTCACCCTGCCAAAATAGGGGAAG
GAGGCCGCAAGCGTCAAACTATGGGGAGGTGCAAGATCCCTGGATGCTCG
TCGTTCATCCTGCACTGCAATCATGTCCAGCCGGGAGATGCTTTTTTCGC
AGATCCTCCCTTTTATGCACCCGCTTCAGCATTGGCAGGAGTGACGACCA
AGGAGAGCGGGGCGGGTGATGCGGCCAGCAGAGGA
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