mRNA_C-tenellus_contig8125.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8125.1.2
Unique NamemRNA_C-tenellus_contig8125.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8125.1.2 vs. uniprot
Match: A0A6A4ZWQ2_9STRA (Tr-type G domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZWQ2_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.270e-33
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 2 
Query:   53 RVEPKELSALQEDTSRVRNVCILAHVDHGKTTLSDSLVCSNGIISSKLAGKLRFLDSTEDEQVRGITMKSSAISLMY 283
            RV P +L+ALQ+DT+ +RN+CI+AHVDHGKTTLSDSLV SNGIIS KLAGK+RFLD+TE+EQ RGITMKSSAISLMY
Sbjct:    4 RVGPGQLAALQKDTAHIRNICIIAHVDHGKTTLSDSLVSSNGIISDKLAGKVRFLDNTEEEQTRGITMKSSAISLMY 80
[Close]
BLAST of mRNA_C-tenellus_contig8125.1.2 vs. uniprot
Match: A0A418FMK4_9STRA (Tr-type G domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FMK4_9STRA)

HSP 1 Score: 127 bits (319), Expect = 4.160e-32
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 2 
Query:   53 RVEPKELSALQEDTSRVRNVCILAHVDHGKTTLSDSLVCSNGIISSKLAGKLRFLDSTEDEQVRGITMKSSAISLMY 283
            RV P +L+ALQ+DT+ +RN+CI+AHVDHGKTTLSDSLV SNGIIS KLAGK+RFLD+TE+EQ RGITMKSSAISLMY
Sbjct:    4 RVGPGQLAALQKDTAHIRNICIIAHVDHGKTTLSDSLVSSNGIISDKLAGKVRFLDNTEEEQTRGITMKSSAISLMY 80
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BLAST of mRNA_C-tenellus_contig8125.1.2 vs. uniprot
Match: A0A024UE77_9STRA (Tr-type G domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UE77_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.810e-31
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 2 
Query:   53 RVEPKELSALQEDTSRVRNVCILAHVDHGKTTLSDSLVCSNGIISSKLAGKLRFLDSTEDEQVRGITMKSSAISLMY 283
            RV P++L+ALQ+DT  +RN+CI+AHVDHGKTTLSDSLV SNGIIS KLAGK+RFLD+TE+EQ RGITMKSSAISLMY
Sbjct:    5 RVGPRQLAALQKDTEHIRNICIIAHVDHGKTTLSDSLVSSNGIISDKLAGKVRFLDNTEEEQTRGITMKSSAISLMY 81
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BLAST of mRNA_C-tenellus_contig8125.1.2 vs. uniprot
Match: A0A3L6VHL8_9STRA (Tr-type G domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VHL8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.070e-31
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 2 
Query:   53 RVEPKELSALQEDTSRVRNVCILAHVDHGKTTLSDSLVCSNGIISSKLAGKLRFLDSTEDEQVRGITMKSSAISLMY 283
            RV P +L+ALQ+DT+ +RN+CI+AHVDHGKTTLSDSLV SNGIIS KLAGK+RFLD+TE+EQ RGITMKSSAISLMY
Sbjct:    4 RVGPGQLAALQKDTAHIRNICIIAHVDHGKTTLSDSLVSSNGIISDKLAGKVRFLDNTEEEQTRGITMKSSAISLMY 80
[Close]
BLAST of mRNA_C-tenellus_contig8125.1.2 vs. uniprot
Match: A0A485LNA7_9STRA (Aste57867_23523 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNA7_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.080e-30
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 2 
Query:   53 RVEPKELSALQEDTSRVRNVCILAHVDHGKTTLSDSLVCSNGIISSKLAGKLRFLDSTEDEQVRGITMKSSAISLMY 283
            RV P +LSALQ+DT+ +RN+CI+AHVDHGKTTLSDSLV SNGIIS KLAGK+R+LD+TE+EQ RGITMKSSAISLMY
Sbjct:    4 RVGPAQLSALQKDTAHIRNICIIAHVDHGKTTLSDSLVSSNGIISDKLAGKVRYLDNTEEEQTRGITMKSSAISLMY 80
[Close]
BLAST of mRNA_C-tenellus_contig8125.1.2 vs. uniprot
Match: W4H5A7_9STRA (Tr-type G domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H5A7_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.470e-30
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 2 
Query:   53 RVEPKELSALQEDTSRVRNVCILAHVDHGKTTLSDSLVCSNGIISSKLAGKLRFLDSTEDEQVRGITMKSSAISLMY 283
            RV P +L+ALQ+DT+ +RN+CI+AHVDHGKTTLSDSLV SNGIIS KLAGK+RFLD+TE+EQ RGITMKSSAISLMY
Sbjct:    4 RVGPGQLAALQKDTAHIRNICIIAHVDHGKTTLSDSLVSSNGIISDKLAGKVRFLDNTEEEQTRGITMKSSAISLMY 80
[Close]
BLAST of mRNA_C-tenellus_contig8125.1.2 vs. uniprot
Match: A0A6G0XV12_9STRA (Tr-type G domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV12_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.720e-30
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 2 
Query:   53 RVEPKELSALQEDTSRVRNVCILAHVDHGKTTLSDSLVCSNGIISSKLAGKLRFLDSTEDEQVRGITMKSSAISLMY 283
            RV P +L+ALQ+DT+ +RN+CI+AHVDHGKTTLSDSLV SNGIIS KLAGK+R+LD+TE+EQ RGITMKSSAISLMY
Sbjct:    4 RVGPAQLAALQKDTAHIRNICIIAHVDHGKTTLSDSLVSSNGIISDKLAGKVRYLDNTEEEQTRGITMKSSAISLMY 80
[Close]
BLAST of mRNA_C-tenellus_contig8125.1.2 vs. uniprot
Match: A0A7S2RBJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBJ6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.400e-30
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = 2 
Query:   53 RVEPKELSALQEDTSRVRNVCILAHVDHGKTTLSDSLVCSNGIISSKLAGKLRFLDSTEDEQVRGITMKSSAISLMYTLQPR 298
            RV P  L ALQ +  RVRN+CILAHVDHGKTTLSD LV SNGIIS + AGKLR+LDS EDEQ RGITM++SAISL+Y  + R
Sbjct:    4 RVAPGRLVALQREPGRVRNICILAHVDHGKTTLSDLLVSSNGIISERQAGKLRYLDSLEDEQKRGITMRASAISLVYRARKR 85
[Close]
BLAST of mRNA_C-tenellus_contig8125.1.2 vs. uniprot
Match: K3WNV1_GLOUD (Tr-type G domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WNV1_GLOUD)

HSP 1 Score: 125 bits (314), Expect = 6.940e-30
Identity = 60/77 (77.92%), Postives = 70/77 (90.91%), Query Frame = 2 
Query:   53 RVEPKELSALQEDTSRVRNVCILAHVDHGKTTLSDSLVCSNGIISSKLAGKLRFLDSTEDEQVRGITMKSSAISLMY 283
            RV P+ LS LQ  T+R+RN+CILAHVDHGKTTLSDSLV +NGIIS KLAGK+RFLD+TE+EQ+RGITMKSSAISL+Y
Sbjct:    7 RVTPETLSGLQHATARIRNICILAHVDHGKTTLSDSLVSANGIISEKLAGKIRFLDNTEEEQIRGITMKSSAISLVY 83
[Close]
BLAST of mRNA_C-tenellus_contig8125.1.2 vs. uniprot
Match: A0A8K1FMY3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMY3_PYTOL)

HSP 1 Score: 124 bits (311), Expect = 1.740e-29
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 2 
Query:   53 RVEPKELSALQEDTSRVRNVCILAHVDHGKTTLSDSLVCSNGIISSKLAGKLRFLDSTEDEQVRGITMKSSAISLMYTLQP 295
            RV P +L++LQ  T R+RN+CILAHVDHGKTTLSDSLV +NGIIS KLAGK+RFLD+TE+EQ RGITMKSSAISL++  +P
Sbjct:    5 RVTPTQLASLQRTTERIRNICILAHVDHGKTTLSDSLVSANGIISEKLAGKIRFLDNTEEEQTRGITMKSSAISLLFINEP 85
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8125.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A4ZWQ2_9STRA8.270e-3379.22Tr-type G domain-containing protein n=1 Tax=Aphano... [more]
A0A418FMK4_9STRA4.160e-3279.22Tr-type G domain-containing protein (Fragment) n=1... [more]
A0A024UE77_9STRA5.810e-3179.22Tr-type G domain-containing protein n=1 Tax=Aphano... [more]
A0A3L6VHL8_9STRA7.070e-3179.22Tr-type G domain-containing protein n=3 Tax=Aphano... [more]
A0A485LNA7_9STRA1.080e-3079.22Aste57867_23523 protein n=1 Tax=Aphanomyces stella... [more]
W4H5A7_9STRA1.470e-3079.22Tr-type G domain-containing protein n=7 Tax=Aphano... [more]
A0A6G0XV12_9STRA2.720e-3077.92Tr-type G domain-containing protein n=1 Tax=Aphano... [more]
A0A7S2RBJ6_9STRA6.400e-3070.73Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K3WNV1_GLOUD6.940e-3077.92Tr-type G domain-containing protein n=1 Tax=Globis... [more]
A0A8K1FMY3_PYTOL1.740e-2972.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8125contigC-tenellus_contig8125:1481..3327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3I9
Preferred nameEFTUD1
PFAMsEFG_C,EFG_II,GTP_EFTU,GTP_EFTU_D2
Model size573
Max annot lvl2759|Eukaryota
KEGG koko:K03234,ko:K14536
KEGG Pathwayko03008,ko04152,ko04921,map03008,map04152,map04921
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006412,GO:0006414,GO:0006417,GO:0006448,GO:0006518,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0019637,GO:0019693,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042256,GO:0042278,GO:0042802,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045901,GO:0046039,GO:0046128,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0072521,GO:0080090,GO:0097159,GO:0097367,GO:1901068,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1990145,GO:2000112
Exons3
Evalue6.98e-38
EggNOG OGsCOG0480@1|root,KOG0467@2759|Eukaryota
DescriptionGTPase activity
Cds size549
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009,ko03012,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790081.65314-CDS-C-tenellus_contig8125:1480..18261680790081.65314-CDS-C-tenellus_contig8125:1480..1826Choristocarpus tenellus KU2346CDSC-tenellus_contig8125 1481..1826 -
1680790081.6651313-CDS-C-tenellus_contig8125:2247..23251680790081.6651313-CDS-C-tenellus_contig8125:2247..2325Choristocarpus tenellus KU2346CDSC-tenellus_contig8125 2248..2325 -
1680790081.6781137-CDS-C-tenellus_contig8125:3180..33051680790081.6781137-CDS-C-tenellus_contig8125:3180..3305Choristocarpus tenellus KU2346CDSC-tenellus_contig8125 3181..3305 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790081.687083-UTR-C-tenellus_contig8125:3305..33271680790081.687083-UTR-C-tenellus_contig8125:3305..3327Choristocarpus tenellus KU2346UTRC-tenellus_contig8125 3306..3327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8125.1.2prot_C-tenellus_contig8125.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8125 1481..3305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8125.1.2

>prot_C-tenellus_contig8125.1.2 ID=prot_C-tenellus_contig8125.1.2|Name=mRNA_C-tenellus_contig8125.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=183bp
MAGFPRAGGKRVEPKELSALQEDTSRVRNVCILAHVDHGKTTLSDSLVCS
NGIISSKLAGKLRFLDSTEDEQVRGITMKSSAISLMYTLQPRPKPGKQGP
KQAQGQGHSVGVKEGGVSGINEGPEVDRVVSEKVLGMGDTALQSITGGLG
AGGGGGHQLRGIRGQAGEAKACGGGPPRLGGVG
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mRNA from alignment at C-tenellus_contig8125:1481..3327-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8125.1.2 ID=mRNA_C-tenellus_contig8125.1.2|Name=mRNA_C-tenellus_contig8125.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1847bp|location=Sequence derived from alignment at C-tenellus_contig8125:1481..3327- (Choristocarpus tenellus KU2346)
TTCTACAAGGTCAGGAGTGGTGATGGCAGGCTTCCCTCGGGCTGGGGGGA
AGAGGGTTGAGCCCAAGGAACTGAGCGCTCTCCAAGAGGACACATCGAGA
GTTCGCAACGTTTGCATTCTTGCCCACGTTGACCACGGAAAGACCACGTG
AGCATCATTGTGTTTCGTGAAAAACGCTCTAGTGATCTGGAGTAGGTGTA
GATGTCTCTTTTTGTTGTTCGGTATGAGACCTCATTGACAGACTAGATGG
CGACTGAACCTGCTGTGCAATCCCATTGAATATACCCGCAATGAGCTTGG
CGGGAGCTTGCTCGTGCTTCTAAGCTCATAGTGGCTTGAAGCAGTTACTA
CTGGAGGCCCTGCATTGCCATCTTGGCCTCGGCGATGGGCCAGTGATGTT
GGCTTGGCTTTTCCTTGATATGCCCTTGACTTGAGTCTTTTCCTGGAGGT
CATAAGAAGGCTTGAGGTTTTTATTTTGCAGCACTCAATTGTTCATGATG
AAGCGTGTGGCAAGATACCCTTTGCATGTGTCGCAAACTTGGTCATTGCG
ACATAGGTAGCTATTTCTTGTTGGTCCATGGTGAACAAGTAAGTCGTTGA
CCAACTTTTGTGGAGATCATATTGCGGAGTAGATGGCTTTAGCTTTGTGA
TCAACAGTGTTTAGCTACACTACGTTGTAGAGAACATGGCCTTGGTTCTG
ATCGATCGAAAAGTCCTGTATATTCAGGTATCTCCTGTGTCCATGGACCA
CCACCACACTTGCACGTTGTAATCTCTCCCACAAACCTCATCCTTGAAGG
GTCCACCCCCAGACTTCACCACACCTTACATGCGAGGGTCAAGTCGACAT
TCAATCAACTTGCTCTACAACCGTATCGATGCGAGCACCATCGACATTCA
ATATGTTAATGTTTGCTGGTGTTCTCCCATGCCCCGTTCGTCCTATCATC
CCTGTGTTTGATGCTGTGGCTTGGGCTAAAATATCTGAACTTCCGTGAGC
AGCTTGTCTGACAGCTTGGTGTGCTCCAATGGCATCATCTCCTCCAAGCT
CGCCGGAAAACTGCGCTTTCTGGATAGCACGTGAGCAGTATGATCCCACG
CAAACCTCTGAAATGATAATCTCCACTTCCACTGTGAAGTACAGGGGCAC
ATGTGCTGCCCTGGAGAGTATTCCGTGCAAAAATATTTCTTGAATTTGCG
CCAATTAAATGTATCTATACCGTATTTTACAAATTCCGTCCACATTTTCA
CCCTCCAACAGCATACCTCCGTCCAGTGACCAGCTAGGTGCTCCATTGTA
CAAGAACCACTTTCACAAGAACAAACACTGCGTACAGCAATGGCACTACT
TTGAAGACTCAATCGGACAATACTGCACATATAATGCCACTCCTCATGAA
CTTTATCATAGGATCATCAGCACCCCGCCCACCTCACCATGAATGACCAC
AGACCAGCAACACATCCATCTATCATACAATACCCCATCCCTATTACCCA
GGGAGGATGAGCAGGTCCGAGGTATTACCATGAAGTCGAGTGCTATATCT
CTCATGTACACCCTGCAGCCCAGGCCTAAGCCCGGAAAACAGGGGCCCAA
GCAAGCCCAAGGGCAAGGGCACAGTGTTGGAGTAAAAGAGGGAGGCGTTT
CTGGTATAAATGAGGGCCCAGAGGTGGACAGGGTTGTATCAGAGAAAGTT
CTGGGCATGGGAGATACAGCACTCCAGAGCATAACTGGAGGACTTGGCGC
AGGGGGTGGAGGGGGCCATCAACTGAGGGGTATAAGAGGGCAGGCGGGTG
AGGCAAAGGCCTGTGGGGGTGGGCCGCCACGCTTGGGTGGAGTTGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig8125:1481..3327-

>mRNA_C-tenellus_contig8125.1.2 ID=mRNA_C-tenellus_contig8125.1.2|Name=mRNA_C-tenellus_contig8125.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=549bp|location=Sequence derived from alignment at C-tenellus_contig8125:1481..3327- (Choristocarpus tenellus KU2346)
ATGGCAGGCTTCCCTCGGGCTGGGGGGAAGAGGGTTGAGCCCAAGGAACT
GAGCGCTCTCCAAGAGGACACATCGAGAGTTCGCAACGTTTGCATTCTTG
CCCACGTTGACCACGGAAAGACCACCTTGTCTGACAGCTTGGTGTGCTCC
AATGGCATCATCTCCTCCAAGCTCGCCGGAAAACTGCGCTTTCTGGATAG
CACGGAGGATGAGCAGGTCCGAGGTATTACCATGAAGTCGAGTGCTATAT
CTCTCATGTACACCCTGCAGCCCAGGCCTAAGCCCGGAAAACAGGGGCCC
AAGCAAGCCCAAGGGCAAGGGCACAGTGTTGGAGTAAAAGAGGGAGGCGT
TTCTGGTATAAATGAGGGCCCAGAGGTGGACAGGGTTGTATCAGAGAAAG
TTCTGGGCATGGGAGATACAGCACTCCAGAGCATAACTGGAGGACTTGGC
GCAGGGGGTGGAGGGGGCCATCAACTGAGGGGTATAAGAGGGCAGGCGGG
TGAGGCAAAGGCCTGTGGGGGTGGGCCGCCACGCTTGGGTGGAGTTGGG
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