mRNA_C-tenellus_contig7979.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7979.2.1
Unique NamemRNA_C-tenellus_contig7979.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7979.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7979contigC-tenellus_contig7979:3666..5580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1409
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_003470.1
Cds size1374
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790073.2151186-UTR-C-tenellus_contig7979:3665..37001680790073.2151186-UTR-C-tenellus_contig7979:3665..3700Choristocarpus tenellus KU2346UTRC-tenellus_contig7979 3666..3700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790073.2252092-CDS-C-tenellus_contig7979:3700..43411680790073.2252092-CDS-C-tenellus_contig7979:3700..4341Choristocarpus tenellus KU2346CDSC-tenellus_contig7979 3701..4341 +
1680790073.2345335-CDS-C-tenellus_contig7979:4510..47271680790073.2345335-CDS-C-tenellus_contig7979:4510..4727Choristocarpus tenellus KU2346CDSC-tenellus_contig7979 4511..4727 +
1680790073.2437842-CDS-C-tenellus_contig7979:5064..55801680790073.2437842-CDS-C-tenellus_contig7979:5064..5580Choristocarpus tenellus KU2346CDSC-tenellus_contig7979 5065..5580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7979.2.1prot_C-tenellus_contig7979.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7979 3701..5580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7979.2.1

>prot_C-tenellus_contig7979.2.1 ID=prot_C-tenellus_contig7979.2.1|Name=mRNA_C-tenellus_contig7979.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=458bp
MEVILDVLCPTVISREWVSGSRGHHHILKAVRNSLVANPGRKEKAIQLGL
VGELLNLIETSTTGVDSTNDGERVFLGAVTDDTECVLHSIGLLGLLASHH
AFLSGLTEVQAHRLLCQVKQCLKYGDGLVQASTLRTLTMIYDSTEALDLP
DMPESVVHGILKELIGWTWTEDVKLLGIGALAAMTRDDTFARKLAMSVAA
LDPGLLVRPLLRICQHNKCEVTKAAKASRQARFRGGQGEKLVPLLELLNN
LSSQLPTVIGQWIDNYEQGEALLGCLENLLTYPEEKVRILTGMVLVHMSS
SRVLNFSEGGMREVAIEQCKPHSLEHIVTHRAVPLFARSLSAFAKALKQT
CGGEKKSTVGDIGVATGVKKCSFRDARLMARAVAEATGQGTRRQKEALQC
GAVNALAEWMQARTATEMTSINGDPVKKGPGGREEECAMVDCAALSTLGV
LCSNCEEA
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mRNA from alignment at C-tenellus_contig7979:3666..5580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7979.2.1 ID=mRNA_C-tenellus_contig7979.2.1|Name=mRNA_C-tenellus_contig7979.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1915bp|location=Sequence derived from alignment at C-tenellus_contig7979:3666..5580+ (Choristocarpus tenellus KU2346)
CCCAAAAGTCATAAGGAGAGGAATCGGGGAGTACGATGGAGGTCATTTTG
GATGTCCTCTGTCCAACCGTAATTTCACGAGAGTGGGTTTCAGGGTCTCG
GGGCCACCACCATATATTGAAGGCGGTGCGGAATTCACTTGTAGCCAATC
CAGGAAGGAAGGAGAAGGCTATCCAGCTCGGATTAGTTGGCGAACTCCTC
AACCTTATTGAAACTTCTACCACAGGGGTGGATTCCACCAATGATGGAGA
AAGAGTTTTTCTGGGAGCAGTGACAGATGACACAGAATGCGTTCTTCACA
GCATTGGGTTGCTGGGGTTATTAGCCAGTCACCATGCGTTCCTGTCCGGG
CTAACAGAGGTCCAAGCGCACAGGCTGCTCTGTCAGGTGAAACAATGTCT
GAAATATGGAGATGGCCTCGTTCAAGCCTCCACACTCAGGACTCTCACAA
TGATATACGACAGCACCGAGGCTCTTGATCTACCTGATATGCCTGAAAGC
GTAGTACACGGCATACTCAAGGAGCTCATAGGGTGGACTTGGACGGAGGA
CGTAAAGTTGCTGGGTATTGGCGCTCTTGCTGCTATGACGAGGGATGATA
CCTTTGCCAGGAAGTTGGCGATGTCGGTGGCGGCATTAGACCCAGGGCTA
TTAGTGCGACCCTTGCTCAGGATATGGTGAGTCATTTTTGAGCAGTGAAA
GTCTTAAATTAATCGCGATGTTCAGTACAATTTATGGGAGCCCCACCATG
AGGTCTGTCCATATCAGGTCGGCACCAGTTGATGTGTTAGAACACCGACC
TTTATCCCTGAATAAATAAATTACGCTTCCCTTTATGCGTCCCAGTCAGC
ACAACAAGTGCGAGGTGACGAAAGCGGCGAAGGCCTCGCGGCAGGCAAGG
TTTAGGGGTGGACAAGGGGAAAAGTTAGTACCCCTCTTGGAGCTGCTGAA
CAACTTGTCATCTCAGTTGCCTACTGTGATTGGGCAATGGATAGATAATT
ATGAACAGGGAGAGGCACTTCTGGGGTGCCTGGAAAACCTGCTGACCTAT
CCAGAGGAGAAGGTAAGAGGTACCGAAAAGGTCAATAGTAGGTGATGTGA
CGCCTTTAAAGACCAACCTTATCGTCTTCGAATCGAAATTTTTCTGCCCT
GGATTGTAGGAAGGCTGGTGCAATGCTTTCTGTTTACCACGTCCATACAG
TCATGCACCACCTTGCCTACACTACTGTGAGAGTTCGAGCATCAGATTAG
TTGAACACTACCGGTAAGCTCGACTATCCTTCCACCCTAACAGGTGTCAT
GTCTCTGCCCCTGCCCCTGCCCCCTTCCCCATACATACCCATCCCTCTCA
CACACCTCAATGGCATACATGAATGGCACGTGCACTTGGTTAATGGAAGG
TTCGTATCCTGACTGGGATGGTACTGGTGCATATGTCGTCAAGCAGAGTC
CTCAACTTTTCTGAGGGGGGCATGCGTGAGGTTGCCATTGAGCAATGCAA
ACCTCATTCCCTCGAGCACATTGTCACCCACCGTGCTGTCCCACTTTTTG
CACGCTCCCTATCAGCTTTCGCAAAAGCACTTAAACAAACATGTGGAGGT
GAAAAAAAGTCGACCGTTGGAGACATTGGAGTTGCTACTGGCGTCAAGAA
GTGCTCATTTCGCGATGCTAGACTGATGGCACGGGCAGTGGCCGAGGCCA
CGGGACAGGGAACAAGACGGCAAAAGGAGGCCTTGCAGTGTGGTGCAGTG
AATGCACTTGCAGAGTGGATGCAGGCACGTACAGCTACAGAAATGACAAG
CATCAATGGTGATCCAGTGAAGAAGGGGCCTGGGGGGAGGGAAGAAGAGT
GTGCAATGGTAGATTGTGCTGCATTATCCACGCTTGGAGTATTGTGCTCC
AACTGTGAAGAGGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig7979:3666..5580+

>mRNA_C-tenellus_contig7979.2.1 ID=mRNA_C-tenellus_contig7979.2.1|Name=mRNA_C-tenellus_contig7979.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1374bp|location=Sequence derived from alignment at C-tenellus_contig7979:3666..5580+ (Choristocarpus tenellus KU2346)
ATGGAGGTCATTTTGGATGTCCTCTGTCCAACCGTAATTTCACGAGAGTG
GGTTTCAGGGTCTCGGGGCCACCACCATATATTGAAGGCGGTGCGGAATT
CACTTGTAGCCAATCCAGGAAGGAAGGAGAAGGCTATCCAGCTCGGATTA
GTTGGCGAACTCCTCAACCTTATTGAAACTTCTACCACAGGGGTGGATTC
CACCAATGATGGAGAAAGAGTTTTTCTGGGAGCAGTGACAGATGACACAG
AATGCGTTCTTCACAGCATTGGGTTGCTGGGGTTATTAGCCAGTCACCAT
GCGTTCCTGTCCGGGCTAACAGAGGTCCAAGCGCACAGGCTGCTCTGTCA
GGTGAAACAATGTCTGAAATATGGAGATGGCCTCGTTCAAGCCTCCACAC
TCAGGACTCTCACAATGATATACGACAGCACCGAGGCTCTTGATCTACCT
GATATGCCTGAAAGCGTAGTACACGGCATACTCAAGGAGCTCATAGGGTG
GACTTGGACGGAGGACGTAAAGTTGCTGGGTATTGGCGCTCTTGCTGCTA
TGACGAGGGATGATACCTTTGCCAGGAAGTTGGCGATGTCGGTGGCGGCA
TTAGACCCAGGGCTATTAGTGCGACCCTTGCTCAGGATATGTCAGCACAA
CAAGTGCGAGGTGACGAAAGCGGCGAAGGCCTCGCGGCAGGCAAGGTTTA
GGGGTGGACAAGGGGAAAAGTTAGTACCCCTCTTGGAGCTGCTGAACAAC
TTGTCATCTCAGTTGCCTACTGTGATTGGGCAATGGATAGATAATTATGA
ACAGGGAGAGGCACTTCTGGGGTGCCTGGAAAACCTGCTGACCTATCCAG
AGGAGAAGGTTCGTATCCTGACTGGGATGGTACTGGTGCATATGTCGTCA
AGCAGAGTCCTCAACTTTTCTGAGGGGGGCATGCGTGAGGTTGCCATTGA
GCAATGCAAACCTCATTCCCTCGAGCACATTGTCACCCACCGTGCTGTCC
CACTTTTTGCACGCTCCCTATCAGCTTTCGCAAAAGCACTTAAACAAACA
TGTGGAGGTGAAAAAAAGTCGACCGTTGGAGACATTGGAGTTGCTACTGG
CGTCAAGAAGTGCTCATTTCGCGATGCTAGACTGATGGCACGGGCAGTGG
CCGAGGCCACGGGACAGGGAACAAGACGGCAAAAGGAGGCCTTGCAGTGT
GGTGCAGTGAATGCACTTGCAGAGTGGATGCAGGCACGTACAGCTACAGA
AATGACAAGCATCAATGGTGATCCAGTGAAGAAGGGGCCTGGGGGGAGGG
AAGAAGAGTGTGCAATGGTAGATTGTGCTGCATTATCCACGCTTGGAGTA
TTGTGCTCCAACTGTGAAGAGGCC
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