mRNA_C-tenellus_contig7963.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7963.5.1
Unique NamemRNA_C-tenellus_contig7963.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7963.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7963contigC-tenellus_contig7963:4950..5375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size182
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790072.0670037-CDS-C-tenellus_contig7963:4949..50481680790072.0670037-CDS-C-tenellus_contig7963:4949..5048Choristocarpus tenellus KU2346CDSC-tenellus_contig7963 4950..5048 +
1680790072.078843-CDS-C-tenellus_contig7963:5294..53751680790072.078843-CDS-C-tenellus_contig7963:5294..5375Choristocarpus tenellus KU2346CDSC-tenellus_contig7963 5295..5375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7963.5.1prot_C-tenellus_contig7963.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7963 4950..5375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7963.5.1

>prot_C-tenellus_contig7963.5.1 ID=prot_C-tenellus_contig7963.5.1|Name=mRNA_C-tenellus_contig7963.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=60bp
MDANSCTGKRGEGRGISTAGFLRHVEEMCSIIMVRPQGGYVKRSIHRHDN
AMAQNFASTS
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mRNA from alignment at C-tenellus_contig7963:4950..5375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7963.5.1 ID=mRNA_C-tenellus_contig7963.5.1|Name=mRNA_C-tenellus_contig7963.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=426bp|location=Sequence derived from alignment at C-tenellus_contig7963:4950..5375+ (Choristocarpus tenellus KU2346)
ATGGACGCAAATTCTTGCACCGGAAAGAGAGGTGAGGGAAGGGGGATCTC
GACAGCAGGATTCCTGAGGCATGTGGAGGAGATGTGTTCAATCATAATGG
TGAGCACCTGTTGATGCTTGAATCAATGAACAGAGATTTCAACCTGTTAA
TACATATCCAGTGTACCCAAGGGAAAAGAGTCTCATACGTATATGGGCCA
TCGAGGGAAAATGGGGTCCCTTACACTCAGGCTGATCGTCACCCCATTTG
CAACATGAGGGTGCATACAATCTTAACAATGAAATCGGATCACCATATCG
ATCACTATTGCTCCCTATCCTTGCTTGTTTTGCTCCCAATGGCAGGTGCG
ACCACAAGGAGGTTACGTGAAACGGTCCATCCACAGGCACGATAATGCTA
TGGCTCAAAACTTTGCTTCAACATCG
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Coding sequence (CDS) from alignment at C-tenellus_contig7963:4950..5375+

>mRNA_C-tenellus_contig7963.5.1 ID=mRNA_C-tenellus_contig7963.5.1|Name=mRNA_C-tenellus_contig7963.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=180bp|location=Sequence derived from alignment at C-tenellus_contig7963:4950..5375+ (Choristocarpus tenellus KU2346)
ATGGACGCAAATTCTTGCACCGGAAAGAGAGGTGAGGGAAGGGGGATCTC
GACAGCAGGATTCCTGAGGCATGTGGAGGAGATGTGTTCAATCATAATGG
TGCGACCACAAGGAGGTTACGTGAAACGGTCCATCCACAGGCACGATAAT
GCTATGGCTCAAAACTTTGCTTCAACATCG
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