mRNA_C-tenellus_contig7899.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7899.1.1
Unique NamemRNA_C-tenellus_contig7899.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7899.1.1 vs. uniprot
Match: D8LQQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ6_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 7.980e-28
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 VQDAAEAAQIKGFIDQLPEGWESKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 189
            V++AAE+AQIK FI+Q PEGW SKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD
Sbjct:  646 VEEAAESAQIKRFIEQQPEGWSSKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 708
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BLAST of mRNA_C-tenellus_contig7899.1.1 vs. uniprot
Match: A0A6H5KJY8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.820e-27
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 VQDAAEAAQIKGFIDQLPEGWESKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 189
            V++AAE+AQIK FI+Q PEGW S+VGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD
Sbjct:  363 VEEAAESAQIKRFIEQQPEGWSSRVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 425
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BLAST of mRNA_C-tenellus_contig7899.1.1 vs. uniprot
Match: A0A7S2GP66_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP66_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.310e-25
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 VQDAAEAAQIKGFIDQLPEGWESKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 189
            ++ AAEAAQI GFI  L EGW + VGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD
Sbjct:  186 IEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 248
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BLAST of mRNA_C-tenellus_contig7899.1.1 vs. uniprot
Match: A0A812W337_SYMMI (ABCB6 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W337_SYMMI)

HSP 1 Score: 102 bits (253), Expect = 3.170e-25
Identity = 49/63 (77.78%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 VQDAAEAAQIKGFIDQLPEGWESKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 189
            V+ AAEAAQIK FI+ LP+ W ++VGERGL+LSGGEKQR+AIARCLLK+PPIV+LDEATSALD
Sbjct:  104 VEAAAEAAQIKEFIEALPDKWNTQVGERGLRLSGGEKQRIAIARCLLKNPPIVILDEATSALD 166
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BLAST of mRNA_C-tenellus_contig7899.1.1 vs. uniprot
Match: A0A835Z4N6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.020e-25
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 VQDAAEAAQIKGFIDQLPEGWESKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 189
            V+ AAEAAQI+ FI+ LPE WE+ VGERGLKLSGGEKQRVAIARCLLK+PP+VLLDEATSALD
Sbjct:  547 VEAAAEAAQIRTFIESLPERWETNVGERGLKLSGGEKQRVAIARCLLKNPPVVLLDEATSALD 609
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BLAST of mRNA_C-tenellus_contig7899.1.1 vs. uniprot
Match: A0A7S1H4R7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4R7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.800e-25
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:   16 EAAQIKGFIDQLPEGWESKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 189
            EAAQ+  F++ LP+GW+S VG+RGLKLSGGEKQR AIARCLLK+PPIV+LDEATSALD
Sbjct:    1 EAAQLTKFVESLPDGWDSMVGDRGLKLSGGEKQRTAIARCLLKNPPIVILDEATSALD 58
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BLAST of mRNA_C-tenellus_contig7899.1.1 vs. uniprot
Match: A0A6T6V8H9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6V8H9_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 7.480e-25
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 VQDAAEAAQIKGFIDQLPEGWESKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 189
            V++A +AAQI  FI  LPE WE+KVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATS+LD
Sbjct:  619 VKEACKAAQIYNFITNLPEKWETKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSSLD 681
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BLAST of mRNA_C-tenellus_contig7899.1.1 vs. uniprot
Match: A0A7S2GND8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GND8_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.580e-25
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 VQDAAEAAQIKGFIDQLPEGWESKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 189
            ++ AAEAAQI GFI  L EGW + VGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD
Sbjct:  408 IEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 470
[Close]
BLAST of mRNA_C-tenellus_contig7899.1.1 vs. uniprot
Match: A0A7S1XI10_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XI10_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.590e-24
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 VQDAAEAAQIKGFIDQLPEGWESKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 189
            ++ AAE AQI  FI  LP+GWE+ VGERGLKLSGGEKQRVAIARCLLKDPP+VLLDEATSALD
Sbjct:  573 LEAAAEGAQILDFIRALPDGWETMVGERGLKLSGGEKQRVAIARCLLKDPPVVLLDEATSALD 635
[Close]
BLAST of mRNA_C-tenellus_contig7899.1.1 vs. uniprot
Match: A0A7S2UVY2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVY2_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.530e-24
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 VQDAAEAAQIKGFIDQLPEGWESKVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALD 189
            V+ A EAAQI  FI+ LPE W++ VGERGLKLSGGEKQRVAIARCLLKDPP+VLLDEATSALD
Sbjct:  513 VRQACEAAQILPFIESLPEQWDTVVGERGLKLSGGEKQRVAIARCLLKDPPVVLLDEATSALD 575
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7899.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQQ6_ECTSI7.980e-2888.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJY8_9PHAE1.820e-2787.30ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S2GP66_9STRA1.310e-2584.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A812W337_SYMMI3.170e-2577.78ABCB6 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A835Z4N6_9STRA4.020e-2582.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1H4R7_9STRA6.800e-2577.59Hypothetical protein (Fragment) n=1 Tax=Thalassion... [more]
A0A6T6V8H9_9EUKA7.480e-2582.54Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2GND8_9STRA8.580e-2584.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XI10_9STRA2.590e-2480.95Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2UVY2_9STRA3.530e-2480.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7899contigC-tenellus_contig7899:1076..1264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQQ6
Preferred namehmt1
PFAMsABC_membrane,ABC_tran
Model size189
Max annot lvl2759|Eukaryota
KEGG koko:K05661
KEGG TC3.A.1.210
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000166,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006857,GO:0006950,GO:0007034,GO:0008144,GO:0008150,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0015399,GO:0015405,GO:0015440,GO:0015711,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030001,GO:0030554,GO:0031090,GO:0031166,GO:0031224,GO:0031300,GO:0031301,GO:0031310,GO:0032553,GO:0032555,GO:0032559,GO:0033220,GO:0034220,GO:0034486,GO:0034635,GO:0034775,GO:0035443,GO:0035639,GO:0035672,GO:0036094,GO:0036246,GO:0036249,GO:0042221,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0042939,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044604,GO:0046686,GO:0050896,GO:0051179,GO:0051181,GO:0051234,GO:0051716,GO:0055085,GO:0061687,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071585,GO:0071627,GO:0071628,GO:0071702,GO:0071705,GO:0071993,GO:0071994,GO:0071995,GO:0071996,GO:0072337,GO:0072348,GO:0097159,GO:0097237,GO:0097367,GO:0097501,GO:0098588,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:0098754,GO:0098805,GO:0098849,GO:0098852,GO:1901265,GO:1901363,GO:1904680,GO:1990170,GO:1990748
Exons1
Evalue1.31e-28
EggNOG OGsCOG5265@1|root,KOG0056@2759|Eukaryota
Descriptionheme-transporting ATPase activity
Cds size189
COG categoryO
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790067.6663454-CDS-C-tenellus_contig7899:1075..12641680790067.6663454-CDS-C-tenellus_contig7899:1075..1264Choristocarpus tenellus KU2346CDSC-tenellus_contig7899 1076..1264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7899.1.1prot_C-tenellus_contig7899.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7899 1076..1264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7899.1.1

>prot_C-tenellus_contig7899.1.1 ID=prot_C-tenellus_contig7899.1.1|Name=mRNA_C-tenellus_contig7899.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=63bp
VQDAAEAAQIKGFIDQLPEGWESKVGERGLKLSGGEKQRVAIARCLLKDP
PIVLLDEATSALD
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mRNA from alignment at C-tenellus_contig7899:1076..1264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7899.1.1 ID=mRNA_C-tenellus_contig7899.1.1|Name=mRNA_C-tenellus_contig7899.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=189bp|location=Sequence derived from alignment at C-tenellus_contig7899:1076..1264+ (Choristocarpus tenellus KU2346)
GTTCAAGATGCGGCAGAGGCTGCCCAAATCAAAGGGTTTATTGACCAGCT
GCCAGAGGGATGGGAATCCAAGGTGGGGGAGAGGGGGCTCAAGCTTTCTG
GGGGTGAGAAGCAGAGGGTAGCCATTGCTCGGTGTCTACTCAAGGACCCG
CCCATTGTGCTGTTGGATGAGGCTACCAGTGCTCTAGAC
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Coding sequence (CDS) from alignment at C-tenellus_contig7899:1076..1264+

>mRNA_C-tenellus_contig7899.1.1 ID=mRNA_C-tenellus_contig7899.1.1|Name=mRNA_C-tenellus_contig7899.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=189bp|location=Sequence derived from alignment at C-tenellus_contig7899:1076..1264+ (Choristocarpus tenellus KU2346)
GTTCAAGATGCGGCAGAGGCTGCCCAAATCAAAGGGTTTATTGACCAGCT
GCCAGAGGGATGGGAATCCAAGGTGGGGGAGAGGGGGCTCAAGCTTTCTG
GGGGTGAGAAGCAGAGGGTAGCCATTGCTCGGTGTCTACTCAAGGACCCG
CCCATTGTGCTGTTGGATGAGGCTACCAGTGCTCTAGAC
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