mRNA_C-tenellus_contig785.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig785.5.1
Unique NamemRNA_C-tenellus_contig785.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig785.5.1 vs. uniprot
Match: D7FJT1_ECTSI (Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT1_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.510e-29
Identity = 119/354 (33.62%), Postives = 166/354 (46.89%), Query Frame = 1 
Query:    1 QAKTGFLAVAYNPLPYPRHGYLDIPISWSNVTVTDASGRSVESQVLP---APAPIPGTIKSETVGDERLYSKLKRGGGYTLVVPVKT-GPLGISVLRVVKGSPPPPQMTDKL-GVLESDIVAGTNSGTEDVFRAGSGLGISRGPDLVSFQGSEPDLDRDSGRTSNG------VTLYPKSKQKDFNITNGVITLVFDGETGQLKRFHDCSSRSKTGVEAGSEYGPLEVEVNQGWYYYPTFKGESSTGHGSSLPAESAVCSGSTQVTSGSAGVTAALLHPELPTRLLSEGSGSSGDQEGGAYILRPEHPDMQP-LPVGTEEGHGDREGGMGGDGEGLVLKNWRVTEGSLVSEVVQV 1026
            + +  F+ VAYNPL   R GY+D+PISW  V VTD +G  VE+QV+P   +    P  +  +  G+ R   +      YTLV+PV   GPL      V K +       D+L G  +S    G    +E    A  G  +    + V+  G   D    + +T N       + L  ++  +DF+I++  +TL F+G TG+L R    +      VE     G   ++V+QGW+YYPTF G S    GS          G       SA   A+ LH EL  RL          Q+GGAYI RP+    Q    V T  G G  +GG+G + EG ++K W V EG +VSEV QV
Sbjct:  513 EVEDSFVVVAYNPLAQRRAGYVDVPISWPAVAVTDNAGTKVEAQVVPFRHSNLLPPLGVHGDLGGEGRGQGQRPGQHPYTLVLPVGLFGPLEARAFHVAKKTVKDGDDDDRLRGDAKSAAGGGERHISEPSTEAEEGQLLHEQAEGVAAAGLASD--GTTPKTGNNAWEQERLGLPGRAGAQDFSISSDRVTLTFNGTTGRLSRMETHAEAGGV-VEGSGVLGGTVLDVDQGWFYYPTFDGGSDNAAGSDPGNPGGGERGL------SAAAEASRLHGELRERL----DAPQDQQKGGAYIFRPQGAAGQAGRAVATPVGAG-AQGGVGEEEEGRMVKKWWVEEGPVVSEVHQV 852
[Close]
BLAST of mRNA_C-tenellus_contig785.5.1 vs. uniprot
Match: A0A6H5L421_9PHAE (Alpha-mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L421_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.100e-28
Identity = 124/371 (33.42%), Postives = 170/371 (45.82%), Query Frame = 1 
Query:    1 QAKTGFLAVAYNPLPYPRHGYLDIPISWSNVTVTDASGRSVESQVLPAP----APIPGTIKSETVGDERLYSKLKRGGGYTLVVPVKT-GPLGISVLRVVKGSPPPPQMTDKLGV----LESDIVAGTNSGTEDVFRAGSGLGISRGPDLVSFQGSEPDLDRDSGRTSNGVT--------------LYPKSKQKDFNITNGVITLVFDGETGQLKRFHDCSSRSKTGVEAGSEYGPLEVEVNQGWYYYPTFKGESSTGHGSSL--PAESAVCSGSTQVTSGSAGVTAAL----LHPELPTRLLSEGSGSSGDQEGGAYILRPEHPDMQPLPVGTEEGHGDREGGMGGDGEGLVLKNWRVTEGSLVSEVVQV 1026
            +A+  F+ VAYNPL   R GY+D+PISW  V VTD +G  VE+QV+P       P  G +  +  G+ R   +      YTLV+PV   GPL      V K        T K G     L  D  +    G   V    +    + G  L+  QG E  L   +G  S+G T              L  ++  +DF+I++  +TL F+G TG+L R  +  + +  GVE     G   ++V+QGW+YYPTF G S+   G     P E            G  G++AA     LH EL  RL          Q+GGAYI RP+    Q    G        +GG+G + EG ++K W V EG +VSEV QV
Sbjct:  531 EAEDSFVVVAYNPLAQRRTGYVDVPISWPAVAVTDDAGTKVEAQVVPFRHSNLLPSLG-VHGDLGGEGRGQGQWPGQHPYTLVLPVGLFGPLEARAFHVAK-------KTLKYGDDDVRLRGDAKSAVGGGERHVPEQST---EAEGGRLL--QGQEERLAA-AGLASDGTTPKTGNDAWEQEPLGLPGRAGAQDFSISSDRVTLTFNGTTGRLSRM-ETHTEAAAGVEGSEVLGGTMLDVDQGWFYYPTFDGGSNNAAGGDRGNPGE------------GKRGLSAAAEASRLHGELRERL----DAPQDQQKGGAYIFRPQGAAGQAGRAGATPVGAGAQGGVGQE-EGRMVKEWWVEEGPVVSEVHQV 869
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig785.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJT1_ECTSI4.510e-2933.62Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L421_9PHAE1.100e-2833.42Alpha-mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig785contigC-tenellus_contig785:14897..16605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJT1
PFAMsAlpha-mann_mid,Glyco_hydro_38,Glyco_hydro_38C
Model size1526
Max annot lvl2759|Eukaryota
KEGG koko:K01191,ko:K12311
KEGG ReactionR08717,R08718
KEGG Pathwayko00511,ko04142,map00511,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005774,GO:0005775,GO:0005975,GO:0005996,GO:0006013,GO:0006464,GO:0006517,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009100,GO:0009311,GO:0009313,GO:0009505,GO:0009987,GO:0012505,GO:0015923,GO:0016020,GO:0016052,GO:0016192,GO:0016787,GO:0016798,GO:0019318,GO:0019538,GO:0030141,GO:0030312,GO:0031090,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0035578,GO:0036211,GO:0036230,GO:0042119,GO:0042582,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:1901135,GO:1901564,GO:1901575
Exons2
Evalue8.87e-17
EggNOG OGsKOG1959@1|root,KOG1959@2759|Eukaryota
EC3.2.1.24
Descriptionmannose metabolic process
Cds size768
COG categoryG
CAZyGH38
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790064.8292842-UTR-C-tenellus_contig785:14896..153451680790064.8292842-UTR-C-tenellus_contig785:14896..15345Choristocarpus tenellus KU2346UTRC-tenellus_contig785 14897..15345 -
1680790064.8565214-UTR-C-tenellus_contig785:16113..161141680790064.8565214-UTR-C-tenellus_contig785:16113..16114Choristocarpus tenellus KU2346UTRC-tenellus_contig785 16114..16114 -
1680790064.8664777-UTR-C-tenellus_contig785:16297..166051680790064.8664777-UTR-C-tenellus_contig785:16297..16605Choristocarpus tenellus KU2346UTRC-tenellus_contig785 16298..16605 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790064.8426898-CDS-C-tenellus_contig785:15345..161131680790064.8426898-CDS-C-tenellus_contig785:15345..16113Choristocarpus tenellus KU2346CDSC-tenellus_contig785 15346..16113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig785.5.1prot_C-tenellus_contig785.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig785 15346..16113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig785.5.1

>prot_C-tenellus_contig785.5.1 ID=prot_C-tenellus_contig785.5.1|Name=mRNA_C-tenellus_contig785.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=256bp
MTDKLGVLESDIVAGTNSGTEDVFRAGSGLGISRGPDLVSFQGSEPDLDR
DSGRTSNGVTLYPKSKQKDFNITNGVITLVFDGETGQLKRFHDCSSRSKT
GVEAGSEYGPLEVEVNQGWYYYPTFKGESSTGHGSSLPAESAVCSGSTQV
TSGSAGVTAALLHPELPTRLLSEGSGSSGDQEGGAYILRPEHPDMQPLPV
GTEEGHGDREGGMGGDGEGLVLKNWRVTEGSLVSEVVQVSLLFCENWDER
AYNRL*
back to top

mRNA from alignment at C-tenellus_contig785:14897..16605-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig785.5.1 ID=mRNA_C-tenellus_contig785.5.1|Name=mRNA_C-tenellus_contig785.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1709bp|location=Sequence derived from alignment at C-tenellus_contig785:14897..16605- (Choristocarpus tenellus KU2346)
CAGGCCAAGACGGGCTTCCTGGCAGTGGCATACAACCCCTTACCCTACCC
CCGCCATGGTTACCTGGACATTCCCATCTCATGGTCCAACGTGACAGTAA
CTGATGCCTCTGGGAGGAGTGTAGAATCTCAAGTCCTGCCAGCCCCAGCC
CCTATCCCAGGAACAATTAAGAGTGAAACTGTCGGTGATGAAAGACTGTA
CAGCAAGCTCAAGAGGGGAGGAGGATATACCCTGGTTGTTCCTGTAAAGA
CAGGTCCCCTTGGAATCAGTGTTTTGCGTGTTGTGAAGGGATCTCCACCT
CCCCCTCAGTCCTCCCAGTTCCTGAAGACACCATTTTTAGAGGGTGAAGG
GGACACCACTCTTGTGAAGGTGCCTTTCCAAGGGGATACAAACACAGGTT
CTGAGGGGGTGTTAAAAGAAGTATACTCTGAACGAAAAAAAGGATTGCTC
GAAAGGGTTTCCGGCAACCTGAGAAGGGGCAAACATGAGAGGATGACAGA
CAAATTGGGGGTGCTTGAAAGTGATATTGTTGCTGGCACCAACTCTGGGA
CTGAGGATGTCTTCAGGGCAGGATCGGGCTTGGGTATCAGTAGAGGTCCA
GACCTTGTTTCCTTCCAGGGTTCAGAACCAGACCTGGACCGAGACTCAGG
GCGAACTTCAAATGGGGTTACCTTATACCCCAAATCCAAGCAGAAAGACT
TCAACATCACAAATGGAGTTATCACCCTAGTCTTTGATGGAGAAACAGGA
CAGCTGAAGAGGTTCCATGACTGCAGTTCCAGGTCCAAGACAGGAGTCGA
GGCAGGGTCTGAGTACGGTCCCTTGGAGGTAGAGGTAAACCAGGGCTGGT
ACTATTACCCAACATTTAAGGGGGAAAGTTCTACTGGTCATGGTTCATCA
TTACCTGCAGAGTCTGCTGTTTGCAGTGGGTCTACTCAGGTGACATCAGG
GTCAGCCGGAGTAACTGCAGCCTTACTCCATCCTGAGCTGCCCACAAGAT
TGCTATCAGAGGGGAGTGGGTCCAGTGGAGATCAGGAGGGTGGGGCATAC
ATACTCCGTCCTGAGCATCCTGATATGCAGCCTCTGCCTGTTGGAACAGA
AGAGGGGCACGGTGATAGGGAGGGTGGGATGGGAGGGGATGGTGAGGGGC
TGGTGCTCAAGAACTGGAGGGTGACAGAAGGTTCTTTGGTTTCCGAGGTG
GTTCAGGTGAGTCTCTTGTTTTGTGAGAACTGGGATGAGAGAGCTTACAA
TAGGTTGTGATAGTTGATATGCCTACTGCACCCCCTGTTAGAAAGAAGAA
AATATTTTTGTGAATCGTGTGATTCTGTGGCAACGTGGTTCGCTCAAGCA
AGGGTGCTGAAGAGAACCACTGGGTAATACGGACCAGATGGGTGAAGACA
AACTGTAACCGAGAGGACAAGGTTGAGGTTGGACAGGTGCAAGACTGAAA
GGAATGCATGAAAAAATGGGGAGCTGAAGAAGTGGGGATCACAGTTCGGA
TGGGTTTCAGAAAAGAAACCCTTAAGAGATGGAGATCCGTCGGAATAAAG
TATTCATAAGGAGACATTATTGGAAGGCACAGAAATCTATCTCTCTGAAG
ATCCTACACACAGTTGAACTGAAGTTCTCAGACAACCTAAATCTCTATGA
CGGTATATGTCATACAGCAATATCTATGTAACAATAGACAAACCTGCTTT
CCACATCAC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig785:14897..16605-

>mRNA_C-tenellus_contig785.5.1 ID=mRNA_C-tenellus_contig785.5.1|Name=mRNA_C-tenellus_contig785.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=768bp|location=Sequence derived from alignment at C-tenellus_contig785:14897..16605- (Choristocarpus tenellus KU2346)
ATGACAGACAAATTGGGGGTGCTTGAAAGTGATATTGTTGCTGGCACCAA
CTCTGGGACTGAGGATGTCTTCAGGGCAGGATCGGGCTTGGGTATCAGTA
GAGGTCCAGACCTTGTTTCCTTCCAGGGTTCAGAACCAGACCTGGACCGA
GACTCAGGGCGAACTTCAAATGGGGTTACCTTATACCCCAAATCCAAGCA
GAAAGACTTCAACATCACAAATGGAGTTATCACCCTAGTCTTTGATGGAG
AAACAGGACAGCTGAAGAGGTTCCATGACTGCAGTTCCAGGTCCAAGACA
GGAGTCGAGGCAGGGTCTGAGTACGGTCCCTTGGAGGTAGAGGTAAACCA
GGGCTGGTACTATTACCCAACATTTAAGGGGGAAAGTTCTACTGGTCATG
GTTCATCATTACCTGCAGAGTCTGCTGTTTGCAGTGGGTCTACTCAGGTG
ACATCAGGGTCAGCCGGAGTAACTGCAGCCTTACTCCATCCTGAGCTGCC
CACAAGATTGCTATCAGAGGGGAGTGGGTCCAGTGGAGATCAGGAGGGTG
GGGCATACATACTCCGTCCTGAGCATCCTGATATGCAGCCTCTGCCTGTT
GGAACAGAAGAGGGGCACGGTGATAGGGAGGGTGGGATGGGAGGGGATGG
TGAGGGGCTGGTGCTCAAGAACTGGAGGGTGACAGAAGGTTCTTTGGTTT
CCGAGGTGGTTCAGGTGAGTCTCTTGTTTTGTGAGAACTGGGATGAGAGA
GCTTACAATAGGTTGTGA
back to top