mRNA_C-tenellus_contig7821.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7821.1.1
Unique NamemRNA_C-tenellus_contig7821.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7821.1.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 8.710e-18
Identity = 59/204 (28.92%), Postives = 110/204 (53.92%), Query Frame = 1
Query:  328 KWDNMERS-NLWSLRLGQVESAAKSIVHRLEEEEGPVSGARTTTSTMSAEDWQHVDNMIGKGAFGEVYLVDHCGVNAAAKVINVPWTGDHELHKQQQVIAKECSTIKNLQG-----SEHVVTLLDDTVHDKKQFIVFTKFLPGGDLRTSLNVAKEAGFMEEKLQKSVIMDVVAGMKHIHANHVIHGDLKSPNVMMDSHGRAKVS 921
            K+D+++   +L+ L L +  S + +   R++ +       +     + AE     + ++GKG FGEVYL D+ G NAAAKV+++  TG  +  ++Q+  ++  + ++ L+      S + V +         + ++  + L GGDL T L  +K+A  +  +  + +I D+  GM  +H  + +HGDLKS NV++D  GRAK++
Sbjct:  659 KFDSVKEGIDLYQLSLSEAASESVAEARRVKRQR------KLDQVEIPAEYLSITNELLGKGGFGEVYLADYNGHNAAAKVLHIAQTGALDETQKQREASQHRAFLRELEAMIRLRSLNTVNVYGAVTSLPDRMVLVMELLAGGDLLTLLRKSKKA--LPGQQSRQIIRDICTGMAFLHGKNTVHGDLKSANVLLDGDGRAKIA 854          
BLAST of mRNA_C-tenellus_contig7821.1.1 vs. uniprot
Match: D7G7F2_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F2_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 7.360e-17
Identity = 50/149 (33.56%), Postives = 86/149 (57.72%), Query Frame = 1
Query:  490 DNMIGKGAFGEVYLVDHCGVNAAAKVINVPWTGDHELHKQQQVIAKECSTIKNLQG-----SEHVVTLLDDTVHDKKQFIVFTKFLPGGDLRTSLNVAKEAGFMEEKLQKSVIMDVVAGMKHIHANHVIHGDLKSPNVMMDSHGRAKVS 921
            D ++GKG FGEVYL D+ G NAAAKV+++   G  +  ++Q+  ++  + ++ L+      S + V +         + ++  + L GGDL T L  +K+A  +  +  + +I D+  GM  +H  + +HGDLKS NV++D  GRAK++
Sbjct:  886 DELLGKGGFGEVYLADYNGHNAAAKVLHIARMGALDETQKQREASQHRAFLRELEAMIRLRSLNTVNVYGAVTSLPDRMVLVMELLAGGDLLTLLRKSKKA--LPGQQSRRIIRDICTGMAFLHGKNTVHGDLKSANVLLDGDGRAKIA 1032          
BLAST of mRNA_C-tenellus_contig7821.1.1 vs. uniprot
Match: A0A6H5KA37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA37_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.750e-16
Identity = 54/158 (34.18%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  490 DNMIGKGAFGEVYLVDHCGVNAAAKV-------------INVPWTGDHELHK---QQQVIAKECSTIKNLQGSEHVVTLLDDTVHDKKQFIVFTKFLPGGDLRTSLNVAKEAGFMEEKLQKSVIMDVVAGMKHIHANHVIHGDLKSPNVMMDSHGRAK 915
            + M+G+G FGEVYL D+ G NAAAKV             +N P +G  +  +   Q++   +E   +  L+   H V +         + I+  + LPGGDLRT L  +++   + E+  + +I D+ AGM  +H+   +HGDLKS N+++D+ GRAK
Sbjct:  758 EEMLGRGGFGEVYLADYNGHNAAAKVQYIIHGFGRRDDVLNGPKSGQPDAVREKVQRKAFLRELDAMIRLRHP-HTVNVYGAITSLPDRLILVLELLPGGDLRTMLKNSEQP--LPEEQSRQIIKDICAGMAFLHSKSTVHGDLKSANILLDARGRAK 912          
BLAST of mRNA_C-tenellus_contig7821.1.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.770e-16
Identity = 50/143 (34.97%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  490 DNMIGKGAFGEVYLVDHCGVNAAAKVINVPWTGDHELHKQQQVIAKECSTIKNLQGSEHVVTLLDDTVHDKKQFIVFTKFLPGGDLRTSLNVAKEAGFMEEKLQKSVIMDVVAGMKHIHANHVIHGDLKSPNVMMDSHGRAKV 918
            + ++GKG FGEVYL D+ G NAAAK         H+   Q++   +E   +  L+ S H V +           ++  + L GGDLRT L  +++   + ++  + +I D+ AGM  +H    +HGDLKS NV++D  GRAK+
Sbjct:  830 NEVLGKGGFGEVYLADYNGRNAAAK--------HHQNDSQRRAFLRELDAMIRLR-SPHTVNVYGAVTSQPDHMVLVMELLSGGDLRTLLRTSEQP--LPQEQSRRIIGDICAGMAFLHEKDTVHGDLKSANVLLDGSGRAKI 961          
BLAST of mRNA_C-tenellus_contig7821.1.1 vs. uniprot
Match: A0A6H5JSI8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI8_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.250e-16
Identity = 58/196 (29.59%), Postives = 104/196 (53.06%), Query Frame = 1
Query:  352 NLWSLRLGQVESAAKSIVHRLEEEEGPVSGARTTTSTMSAEDWQHVDNMIGKGAFGEVYLVDHCGVNAAAKVINVPW-TGDHELHKQQQVIAKECSTIKNLQG-----SEHVVTLLDDTVHDKKQFIVFTKFLPGGDLRTSLNVAKEAGFMEEKLQKSVIMDVVAGMKHIHANHVIHGDLKSPNVMMDSHGRAKVS 921
            +L+ L L +  S + +   R++ +       +     + AE     D ++GKG FGEVYL D+ G NAAAKV+ +    G  + +++Q+   +  + ++ L+      S + V +         + ++  + L GGDL T L  +K+A  + E+  + +I D+  GM  +H+ + +HGDLKS NV++D  GRAK++
Sbjct:  583 DLYQLSLSEAASESVAKARRIKRQR------KLDRVEIPAEYLSITDELLGKGGFGEVYLADYNGHNAAAKVLYIAHDVGALDENQKQRETRERRAFLRELEAMIRLRSLNTVNVFGAVTSLPDRMVLVMELLAGGDLLTLLRKSKKA--LPEEQSRLIIRDICTGMAFLHSKNTVHGDLKSANVLLDDIGRAKIA 770          
BLAST of mRNA_C-tenellus_contig7821.1.1 vs. uniprot
Match: D7FN19_ECTSI (Putative CTR1-like protein kinase/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN19_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.430e-16
Identity = 51/143 (35.66%), Postives = 80/143 (55.94%), Query Frame = 1
Query:  490 DNMIGKGAFGEVYLVDHCGVNAAAKVINVPWTGDHELHKQQQVIAKECSTIKNLQGSEHVVTLLDDTVHDKKQFIVFTKFLPGGDLRTSLNVAKEAGFMEEKLQKSVIMDVVAGMKHIHANHVIHGDLKSPNVMMDSHGRAKV 918
            + M+G+G FGEVYL D+ G NAAAKV             Q++   +E   +  L+   H V +         + I+  + LPGGDLRT L  +++   + E+  + +I D+ AGM  +H+   +HGDLKS N+++D+ GRAK+
Sbjct:  901 EEMLGRGGFGEVYLADYNGHNAAAKV---------GKKIQRKAFLRELDAMIRLRHP-HTVNVYGAITSLPDRLILVLELLPGGDLRTMLKNSEQP--LPEEQSRQIIKDICAGMAFLHSKSTVHGDLKSANILLDARGRAKI 1031          
BLAST of mRNA_C-tenellus_contig7821.1.1 vs. uniprot
Match: D7FL77_ECTSI (Protein tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL77_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.460e-15
Identity = 48/147 (32.65%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  499 IGKGAFGEVYLVDHCGVNAAAKVINVPWT-GDHELHKQQQVIAKECSTIKNLQG-----SEHVVTLLDDTVHDKKQFIVFTKFLPGGDLRTSLNVAKEAGFMEEKLQKSVIMDVVAGMKHIHANHVIHGDLKSPNVMMDSHGRAKVS 921
            +GKG FGEVYL D+ G NAAAKV+ +    G  + ++QQ+  ++  + ++ L+      S + V +         + ++  + +PGGDL+T L  ++E   + E+  + ++ D+  GM  + +   +HGDLKS NV +D  GRAK +
Sbjct:  176 LGKGGFGEVYLADYNGHNAAAKVLRITHDLGAFDENQQQRETSQRRAFLRELEAMIRLRSPNTVNVYGAVTSLPDRVVLVMELMPGGDLQTILTSSQEP--LPEEQSRRIVRDICTGMAFLQSRKTVHGDLKSANVFLDGSGRAKAT 320          
BLAST of mRNA_C-tenellus_contig7821.1.1 vs. uniprot
Match: D8LAU2_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU2_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 8.760e-15
Identity = 55/161 (34.16%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  490 DNMIGKGAFGEVYLVDHCGVNAAAKVINVPWTGD--HELHKQQQVIAKECSTIKNLQG----------------SEHVVTLLDDTVHDKKQFIVFTKFLPGGDLRTSLNVAKEAGFMEEKLQKSVIMDVVAGMKHIHANHVIHGDLKSPNVMMDSHGRAKV 918
            D+++G+G FGEV+L D+ G NAA KV++V        E+++  Q +A   S  +  Q                 S H V +         + I+  + L GGDLRT L+   +  F EE+ ++ +I DV +GM  +H+   +HGDLKS NV++D  GRAK+
Sbjct:  101 DDLLGRGGFGEVFLADYNGRNAACKVVHVAHDQGALREIYELGQSVASSHSKTQREQNQRRAFLRELEAMIRLQSPHTVNVYGAVTCLPDRLILVMELLSGGDLRTLLSSCDQP-FPEEQSRR-IIGDVCSGMAFLHSKDTVHGDLKSANVLLDGAGRAKI 259          
BLAST of mRNA_C-tenellus_contig7821.1.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.130e-14
Identity = 49/148 (33.11%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  493 NMIGKGAFGEVYLVDHCGVNAAAKVINVPWT-GDHELHKQQQVIAKECSTIKNLQG-----SEHVVTLLDDTVHDKKQFIVFTKFLPGGDLRTSLNVAKEAGFMEEKLQKSVIMDVVAGMKHIHANHVIHGDLKSPNVMMDSHGRAKV 918
            +++GKG FGEVYL D+ G NAAAKV+ +    G  + +++Q+   +    ++ L+      S + V +         + ++  + LP GDL T L   +    + E+  + +I D+ AGM  +H  + +HGDLKS NV++D  GRAK+
Sbjct:  802 DLLGKGGFGEVYLADYNGHNAAAKVLYIAHDLGALDENQKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMVLVMELLPNGDLLTLLR--RSTNPLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKI 947          
BLAST of mRNA_C-tenellus_contig7821.1.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.540e-14
Identity = 49/148 (33.11%), Postives = 83/148 (56.08%), Query Frame = 1
Query:  493 NMIGKGAFGEVYLVDHCGVNAAAKVINVPWT-GDHELHKQQQVIAKECSTIKNLQG-----SEHVVTLLDDTVHDKKQFIVFTKFLPGGDLRTSLNVAKEAGFMEEKLQKSVIMDVVAGMKHIHANHVIHGDLKSPNVMMDSHGRAKV 918
            +++GKG FGEVYL D+ G NAAAKV+ +    G  + +++Q+   +    ++ L+      S + V +         + ++  + LP GDL T L  + +   + E+  + +I D+ AGM  +H  + +HGDLKS NV++D  GRAK+
Sbjct:  827 DLLGKGGFGEVYLADYNGHNAAAKVLYIAHDLGALDENQKQRETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLSDRMVLVMELLPNGDLLTLLRRSTKP--LPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKI 972          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7821.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL57_ECTSI8.710e-1828.92Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]
D7G7F2_ECTSI7.360e-1733.56Tyrosine kinase specific for activated (GTP-bound)... [more]
A0A6H5KA37_9PHAE1.750e-1634.18Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LHV1_ECTSI1.770e-1634.97Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JSI8_9PHAE2.250e-1629.59Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FN19_ECTSI2.430e-1635.66Putative CTR1-like protein kinase/ leucine rich re... [more]
D7FL77_ECTSI2.460e-1532.65Protein tyrosine kinase n=1 Tax=Ectocarpus silicul... [more]
D8LAU2_ECTSI8.760e-1534.16Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G7X7_ECTSI1.130e-1433.11ATP binding / amino acid binding / protein kinase/... [more]
A0A6H5KF25_9PHAE1.540e-1433.11Protein kinase domain-containing protein n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7821contigC-tenellus_contig7821:842..2421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTP4
Preferred nameRIPK4
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,Pkinase,Pkinase_Tyr
Model size957
Max annot lvl2759|Eukaryota
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons4
Evalue3.23e-24
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
EC2.7.11.1
Descriptionprotein kinase activity
Cds size699
COG categoryKLT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7821.1.1prot_C-tenellus_contig7821.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7821 1082..2403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790062.6338599-UTR-C-tenellus_contig7821:841..10811680790062.6338599-UTR-C-tenellus_contig7821:841..1081Choristocarpus tenellus KU2346UTRC-tenellus_contig7821 842..1081 +
1680790062.6874132-UTR-C-tenellus_contig7821:2403..24211680790062.6874132-UTR-C-tenellus_contig7821:2403..2421Choristocarpus tenellus KU2346UTRC-tenellus_contig7821 2404..2421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790062.646276-CDS-C-tenellus_contig7821:1081..12611680790062.646276-CDS-C-tenellus_contig7821:1081..1261Choristocarpus tenellus KU2346CDSC-tenellus_contig7821 1082..1261 +
1680790062.6547968-CDS-C-tenellus_contig7821:1520..16221680790062.6547968-CDS-C-tenellus_contig7821:1520..1622Choristocarpus tenellus KU2346CDSC-tenellus_contig7821 1521..1622 +
1680790062.6691132-CDS-C-tenellus_contig7821:1739..19251680790062.6691132-CDS-C-tenellus_contig7821:1739..1925Choristocarpus tenellus KU2346CDSC-tenellus_contig7821 1740..1925 +
1680790062.6793063-CDS-C-tenellus_contig7821:2172..24031680790062.6793063-CDS-C-tenellus_contig7821:2172..2403Choristocarpus tenellus KU2346CDSC-tenellus_contig7821 2173..2403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7821.1.1

>prot_C-tenellus_contig7821.1.1 ID=prot_C-tenellus_contig7821.1.1|Name=mRNA_C-tenellus_contig7821.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=233bp
MASNMTLPSRLIFSDPCALQLSQYYHRTGKWDNMERSNLWSLRLGQVESA
AKSIVHRLEEEEGPVSGARTTTSTMSAEDWQHVDNMIGKGAFGEVYLVDH
CGVNAAAKVINVPWTGDHELHKQQQVIAKECSTIKNLQGSEHVVTLLDDT
VHDKKQFIVFTKFLPGGDLRTSLNVAKEAGFMEEKLQKSVIMDVVAGMKH
IHANHVIHGDLKSPNVMMDSHGRAKVSAKANA*
back to top

mRNA from alignment at C-tenellus_contig7821:842..2421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7821.1.1 ID=mRNA_C-tenellus_contig7821.1.1|Name=mRNA_C-tenellus_contig7821.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1580bp|location=Sequence derived from alignment at C-tenellus_contig7821:842..2421+ (Choristocarpus tenellus KU2346)
TGAGAGGATCACTAGTTATTAATTACAGCTTTATTAGCTTTTTTTAGCAC GATATTTTAGTGCCAGTAGAAGCCTTACATTATAATAGTGTGGTAATGGC TTGTTCTAGTTTATGATTGCCTAAGACTGTAGGTTCTGGTTACCTTGCAC CATCTCATCTTAGTTCACAGTATCATGCTTGTTGGTCCTGGTGTGCCTCA CATGATCTTACCCTTGTCACCCATGTTTCCTTATAGTTAAATGGCAAGTA ATATGACATTACCATCTCGCCTTATCTTTTCTGACCCTTGTGCCTTGCAG TTGTCTCAATACTACCACAGGACTGGCAAATGGGATAATATGGAGAGATC CAACCTGTGGTCATTGAGGCTTGGTCAAGTAGAATCTGCTGCTAAGAGTA TTGTTCATCGACTTGAGGAGGTGGGTCAAGTCCCGACCGTAAACGATTCT CAAAGTGCCTTTGAAGTATCAATAATGGACAGATGTTATGGTGTTGGAGA CAACTCTTCTTCCATTACTATTAGGAAAGTGACACCTTGTCTTGGACATG TGTTTGAAGTGGGCATCCAACTCCTTCGTTACCTGATATTGATGTGTATC CATCTTGTTTGCTACCTAATGCTGATGTGTAAGTATTGTTGACCAATGTG GTGCATCACTTTTCCTCTCTACCTGCCAGGAGGAAGGACCAGTGTCAGGT GCTAGGACTACCACCTCTACCATGAGTGCAGAGGATTGGCAGCATGTTGA CAACATGATTGGAAAAGGTGCCTTTGGAGAGGTATGGTACATGGATGTCG ATACAGAGGAGTTGGATAGAGAACTCTGAAATTTGGGGCAACTCTGACGG AGACTGATGATATGTCTAATTACAAGGCATAATCCACGCCCGTCTCAGGT GTATCTTGTAGACCACTGTGGTGTTAATGCTGCTGCAAAGGTCATCAATG TGCCTTGGACTGGTGATCACGAGTTGCACAAACAGCAGCAGGTCATAGCT AAGGAGTGCAGTACCATTAAAAATTTGCAGGGATCAGAACATGTGGTTAC CCTTCTTGATGATACTGTGCATGATAAAAAACAGGTGAGGAGTGTATGGT GTGGTTGCTGATCTTGCTAGGTAAACAATGACATTTTTAGGGAGTTTCTT TTGAATGTCAAACGTTCATCAGCACGAGTCTTGTTTTCTAACCTATCCTT AATTCTTCACTTTGGTTCATATGCTCTTAGGTATTTTCCTTTGCGTAAAA CTATGGAACTAACAAGAGTTGAATAAAAATGAATTGAGAATTTCTCACAA TTACCTGCCTTCCTATCGTTGTCAATGGTAGTTCATCGTGTTCACAAAGT TCTTACCAGGTGGAGACTTGAGGACTTCATTGAATGTGGCTAAGGAAGCT GGGTTCATGGAAGAAAAACTGCAGAAAAGTGTGATCATGGATGTTGTGGC TGGCATGAAACACATACATGCCAATCATGTCATACATGGAGATCTCAAGT CTCCGAACGTAATGATGGATAGTCATGGTAGGGCCAAGGTGAGTGCCAAA GCGAATGCCTGAATGTAAAATATATTGATT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7821:842..2421+

>mRNA_C-tenellus_contig7821.1.1 ID=mRNA_C-tenellus_contig7821.1.1|Name=mRNA_C-tenellus_contig7821.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=699bp|location=Sequence derived from alignment at C-tenellus_contig7821:842..2421+ (Choristocarpus tenellus KU2346)
ATGGCAAGTAATATGACATTACCATCTCGCCTTATCTTTTCTGACCCTTG
TGCCTTGCAGTTGTCTCAATACTACCACAGGACTGGCAAATGGGATAATA
TGGAGAGATCCAACCTGTGGTCATTGAGGCTTGGTCAAGTAGAATCTGCT
GCTAAGAGTATTGTTCATCGACTTGAGGAGGAGGAAGGACCAGTGTCAGG
TGCTAGGACTACCACCTCTACCATGAGTGCAGAGGATTGGCAGCATGTTG
ACAACATGATTGGAAAAGGTGCCTTTGGAGAGGTGTATCTTGTAGACCAC
TGTGGTGTTAATGCTGCTGCAAAGGTCATCAATGTGCCTTGGACTGGTGA
TCACGAGTTGCACAAACAGCAGCAGGTCATAGCTAAGGAGTGCAGTACCA
TTAAAAATTTGCAGGGATCAGAACATGTGGTTACCCTTCTTGATGATACT
GTGCATGATAAAAAACAGTTCATCGTGTTCACAAAGTTCTTACCAGGTGG
AGACTTGAGGACTTCATTGAATGTGGCTAAGGAAGCTGGGTTCATGGAAG
AAAAACTGCAGAAAAGTGTGATCATGGATGTTGTGGCTGGCATGAAACAC
ATACATGCCAATCATGTCATACATGGAGATCTCAAGTCTCCGAACGTAAT
GATGGATAGTCATGGTAGGGCCAAGGTGAGTGCCAAAGCGAATGCCTGA
back to top