mRNA_C-tenellus_contig7798.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7798.1.1
Unique NamemRNA_C-tenellus_contig7798.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7798.1.1 vs. uniprot
Match: UPI0018ACD532 (transposase n=2 Tax=Piscirickettsia salmonis TaxID=1238 RepID=UPI0018ACD532)

HSP 1 Score: 57.4 bits (137), Expect = 1.130e-8
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:   80 FEFIAHLIMHIPDSNSCMIRYYGFLSNRTRSKMLPAVYQAIKQFI 214
            FEFI  LI HIP  +  MIRYYGFLS RTR K+LP +Y+ + Q +
Sbjct:   32 FEFIERLIRHIPTKSFKMIRYYGFLSFRTRGKLLPTIYKLLDQTV 76
[Close]
BLAST of mRNA_C-tenellus_contig7798.1.1 vs. uniprot
Match: A0A1G3CCP9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium RIFCSPHIGHO2_12_39_6 TaxID=1801977 RepID=A0A1G3CCP9_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.390e-8
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 2 
Query:   83 EFIAHLIMHIPDSNSCMIRYYGFLSNRTRSKMLPAVYQAIK 205
            +FI+ LI HIPD N   IRYYGFLSN+ R K+LP VYQ ++
Sbjct:    7 DFISRLISHIPDKNFRNIRYYGFLSNKHRGKLLPIVYQLLE 47
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BLAST of mRNA_C-tenellus_contig7798.1.1 vs. uniprot
Match: UPI0018ACD25C (transposase n=1 Tax=Piscirickettsia salmonis TaxID=1238 RepID=UPI0018ACD25C)

HSP 1 Score: 57.4 bits (137), Expect = 1.600e-8
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:   80 FEFIAHLIMHIPDSNSCMIRYYGFLSNRTRSKMLPAVYQAIKQFI 214
            FEFI  LI HIP  +  MIRYYGFLS RTR K+LP +Y+ + Q +
Sbjct:   88 FEFIERLIRHIPTKSFKMIRYYGFLSFRTRGKLLPTIYKLLDQTV 132
[Close]
BLAST of mRNA_C-tenellus_contig7798.1.1 vs. uniprot
Match: UPI000B076598 (transposase n=2 Tax=Piscirickettsia salmonis TaxID=1238 RepID=UPI000B076598)

HSP 1 Score: 57.4 bits (137), Expect = 2.830e-8
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:   80 FEFIAHLIMHIPDSNSCMIRYYGFLSNRTRSKMLPAVYQAIKQFI 214
            FEFI  LI HIP  +  MIRYYGFLS RTR K+LP +Y+ + Q +
Sbjct:   88 FEFIERLIRHIPTKSFKMIRYYGFLSFRTRGKLLPTIYKLLDQTV 132
[Close]
BLAST of mRNA_C-tenellus_contig7798.1.1 vs. uniprot
Match: UPI0018AC94B7 (transposase n=1 Tax=Piscirickettsia salmonis TaxID=1238 RepID=UPI0018AC94B7)

HSP 1 Score: 55.5 bits (132), Expect = 3.520e-8
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 2 
Query:   83 EFIAHLIMHIPDSNSCMIRYYGFLSNRTRSKMLPAVYQAIKQFI 214
            EFI  LI HIP+ +  M+RYYGFLS RTR K+LP +Y+ + Q +
Sbjct:   43 EFIDRLIPHIPEKSFKMVRYYGFLSFRTRGKLLPKIYEILDQTV 86
[Close]
BLAST of mRNA_C-tenellus_contig7798.1.1 vs. uniprot
Match: UPI001B2FF2FE (transposase n=3 Tax=Piscirickettsia salmonis TaxID=1238 RepID=UPI001B2FF2FE)

HSP 1 Score: 57.4 bits (137), Expect = 3.590e-8
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:   80 FEFIAHLIMHIPDSNSCMIRYYGFLSNRTRSKMLPAVYQAIKQFI 214
            FEFI  LI HIP  +  MIRYYGFLS RTR K+LP +Y+ + Q +
Sbjct:  108 FEFIERLIRHIPTKSFKMIRYYGFLSFRTRGKLLPTIYKLLDQTV 152
[Close]
BLAST of mRNA_C-tenellus_contig7798.1.1 vs. uniprot
Match: UPI001D38D652 (Transposase for insertion sequence element IS801 n=1 Tax=Rickettsiales endosymbiont of Trichoplax sp. H2 TaxID=2021221 RepID=UPI001D38D652)

HSP 1 Score: 56.2 bits (134), Expect = 5.260e-8
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 2 
Query:   80 FEFIAHLIMHIPDSNSCMIRYYGFLSNRTRSKMLPAVYQ 196
            F+FI  LI HIPD N  MIRYYG L+NR RSK++P +Y+
Sbjct:   60 FDFIGRLIQHIPDVNFRMIRYYGILANRVRSKLIPILYK 98
[Close]
BLAST of mRNA_C-tenellus_contig7798.1.1 vs. uniprot
Match: A0A6I5YC40_PISSA (Transposase n=11 Tax=Piscirickettsia salmonis TaxID=1238 RepID=A0A6I5YC40_PISSA)

HSP 1 Score: 57.4 bits (137), Expect = 5.770e-8
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:   80 FEFIAHLIMHIPDSNSCMIRYYGFLSNRTRSKMLPAVYQAIKQFI 214
            FEFI  LI HIP  +  MIRYYGFLS RTR K+LP +Y+ + Q +
Sbjct:  169 FEFIERLIRHIPTKSFKMIRYYGFLSFRTRGKLLPTIYKLLDQTV 213
[Close]
BLAST of mRNA_C-tenellus_contig7798.1.1 vs. uniprot
Match: A0A1E3X2S0_9BACT (Transposase (Fragment) n=1 Tax=Candidatus Scalindua rubra TaxID=1872076 RepID=A0A1E3X2S0_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 5.810e-8
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 2 
Query:   83 EFIAHLIMHIPDSNSCMIRYYGFLSNRTRSKMLPAVYQAI 202
            +FIA LI HIPD +   IRYYGFLSNR R K+LP VY+ +
Sbjct:   26 DFIARLICHIPDKHFRNIRYYGFLSNRLRGKLLPIVYKLL 65
[Close]
BLAST of mRNA_C-tenellus_contig7798.1.1 vs. uniprot
Match: UPI0007512B42 (IS91 family transposase n=1 Tax=Piscirickettsia salmonis TaxID=1238 RepID=UPI0007512B42)

HSP 1 Score: 57.4 bits (137), Expect = 5.830e-8
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:   80 FEFIAHLIMHIPDSNSCMIRYYGFLSNRTRSKMLPAVYQAIKQFI 214
            FEFI  LI HIP  +  MIRYYGFLS RTR K+LP +Y+ + Q +
Sbjct:  171 FEFIERLIRHIPTKSFKMIRYYGFLSFRTRGKLLPTIYKLLDQTV 215
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7798.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0018ACD5321.130e-857.78transposase n=2 Tax=Piscirickettsia salmonis TaxID... [more]
A0A1G3CCP9_9BACT1.390e-860.98Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI0018ACD25C1.600e-857.78transposase n=1 Tax=Piscirickettsia salmonis TaxID... [more]
UPI000B0765982.830e-857.78transposase n=2 Tax=Piscirickettsia salmonis TaxID... [more]
UPI0018AC94B73.520e-854.55transposase n=1 Tax=Piscirickettsia salmonis TaxID... [more]
UPI001B2FF2FE3.590e-857.78transposase n=3 Tax=Piscirickettsia salmonis TaxID... [more]
UPI001D38D6525.260e-861.54Transposase for insertion sequence element IS801 n... [more]
A0A6I5YC40_PISSA5.770e-857.78Transposase n=11 Tax=Piscirickettsia salmonis TaxI... [more]
A0A1E3X2S0_9BACT5.810e-862.50Transposase (Fragment) n=1 Tax=Candidatus Scalindu... [more]
UPI0007512B425.830e-857.78IS91 family transposase n=1 Tax=Piscirickettsia sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7798contigC-tenellus_contig7798:300..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1517681.HW45_28820
PFAMsY2_Tnp,Zn_Tnp_IS91
Model size226
Max annot lvl135623|Vibrionales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.18e-07
EggNOG OGsCOG0517@1|root,COG0517@2|Bacteria,1MXI6@1224|Proteobacteria,1T3ME@1236|Gammaproteobacteria,1Y3AC@135623|Vibrionales
DescriptionPutative transposase
Cds size123
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790059.0145679-CDS-C-tenellus_contig7798:299..4221680790059.0145679-CDS-C-tenellus_contig7798:299..422Choristocarpus tenellus KU2346CDSC-tenellus_contig7798 300..422 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790059.0271366-UTR-C-tenellus_contig7798:422..5251680790059.0271366-UTR-C-tenellus_contig7798:422..525Choristocarpus tenellus KU2346UTRC-tenellus_contig7798 423..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7798.1.1prot_C-tenellus_contig7798.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7798 300..422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7798.1.1

>prot_C-tenellus_contig7798.1.1 ID=prot_C-tenellus_contig7798.1.1|Name=mRNA_C-tenellus_contig7798.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=41bp
MHIPDSNSCMIRYYGFLSNRTRSKMLPAVYQAIKQFIPRKI
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mRNA from alignment at C-tenellus_contig7798:300..525-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7798.1.1 ID=mRNA_C-tenellus_contig7798.1.1|Name=mRNA_C-tenellus_contig7798.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=226bp|location=Sequence derived from alignment at C-tenellus_contig7798:300..525- (Choristocarpus tenellus KU2346)
AAGTATGATGGTCAGAAAGTTACTTTTAACTTTCTTGATCATTACAACAA
TACAATTGAGCATGCTGCTATGACAGTGTTTTGAGTTTATTGCTCATCTG
ATTATGCACATACCTGACAGTAACTCTTGCATGATTCGCTATTATGGTTT
CCTCTCCAATAGGACTAGGAGTAAAATGCTTCCCGCTGTATATCAAGCAA
TTAAACAGTTCATTCCTAGAAAAATA
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Coding sequence (CDS) from alignment at C-tenellus_contig7798:300..525-

>mRNA_C-tenellus_contig7798.1.1 ID=mRNA_C-tenellus_contig7798.1.1|Name=mRNA_C-tenellus_contig7798.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=123bp|location=Sequence derived from alignment at C-tenellus_contig7798:300..525- (Choristocarpus tenellus KU2346)
ATGCACATACCTGACAGTAACTCTTGCATGATTCGCTATTATGGTTTCCT
CTCCAATAGGACTAGGAGTAAAATGCTTCCCGCTGTATATCAAGCAATTA
AACAGTTCATTCCTAGAAAAATA
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