mRNA_C-tenellus_contig7792.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7792.1.1
Unique NamemRNA_C-tenellus_contig7792.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7792.1.1 vs. uniprot
Match: A0A6H5KFF8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFF8_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 1.860e-88
Identity = 190/485 (39.18%), Postives = 273/485 (56.29%), Query Frame = 1 
Query:    1 TLIFPSSFEDGLAFATSRGVFQDFSLDENSVRHYGVVVDED-------TGDVYIGTS-VAIKKLSQQLDKS--WTKSTIVGGWVEYQVVGYNLGVGMDDVVHLSVLGVECATILYESSNSLRCISGDSNLGHSDSGEGITAADFIVQTRNGGWSEGGYPRDFEETEIADHSLKPIVTFVQASFRDLSPHALVLDKQEGFLYYSNIASQSVERVALNGSA-----------MEVFMPDVGLVYGMALDT----DNRYIYYTENQEGIIGRFELVRGKGSPLI----ESLVTDLVDPMGIALDLDGDG--LFFTLYRGVIGWAKRNISYTEL---NSLNTTKNFSVIRQMDTAVRLDGIAVARSDA-INDPTELRLYWTESGPWHVIQRSTVNGLGVE--TLVRSGING-GDILWPRGLILDPSGS-GIYFTEFLGTVRWLSTLGDGEDPPVTLLRADTYAAAVAVKSKIGKAKRQGIDGSFFMEGL 1338
            TLI   +F + L    +    +  +L ++ V+  G+ VDE        +GDVY  TS  AI++      KS  W  +T+VGG VE +V GYNLG  +DDVV  SV GVEC T   ESSN+L C  GD  +  SD GE +   D +VQT +GGW++GGYP DF + ++ADHSLKPI+T V+A+ R +SP AL  D   G LYYS++A++S+ R++L+ S             + F+PDVGLV GMA+D     +  ++Y+++ Q G I R EL      P +    + L + L+DPMGIAL+ DG    LF+ L  G I    R+ S +      ++        +R+ D+  RLDGIA++ S+  + DPTE+RLYW ESG    I+RST++G   E  ++   G    G ++WPRGL      S G+ F E+LG+VR L  L        T+  AD+Y AAVA+ + +  A R+G +  FF   +
Sbjct:   37 TLIHRGAFTEQLNLVGADASVEQLALTDDDVQFLGITVDESRSGGKMGSGDVYYATSNSAIQRAHYDSAKSPSWYVTTVVGGHVEVRVEGYNLGTSIDDVVSFSVKGVECPTRRRESSNTLVCALGDPAV-TSDLGESVGTEDIVVQTASGGWTQGGYPGDFVDAKLADHSLKPIITRVEATGRTISPRALCFDSAGGTLYYSDLATRSLNRISLDNSGDGGSTLTAKVEFDAFLPDVGLVQGMAIDVSEGQNGGFVYFSDAQGGTISRVELPADGTRPEVPGARQVLASGLIDPMGIALEPDGGRGRLFYALRGGRICAVSRDGSISTSVPPTAVLLEGGGYEVRRFDSGTRLDGIAISASEGGVLDPTEIRLYWAESGRTPAIKRSTLDGTRPEDVSVEDDGTEAKGQLVWPRGLAFGAEASTGLLFGEYLGSVRLLP-LPPARGSVDTIAEADSYPAAVAIHALVAAAGREGAEERFFTHSV 519
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BLAST of mRNA_C-tenellus_contig7792.1.1 vs. uniprot
Match: UPI0009E4FA15 (low-density lipoprotein receptor-related protein 5-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4FA15)

HSP 1 Score: 68.6 bits (166), Expect = 4.010e-10
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1 
Query:  448 RDFEETEIADHSLKPIVTFVQASFRDLSPHALVLDKQEGFLYYSNIASQSVERVALNGSAMEVFMPDVGLVYGMALDTDNRYIYYTENQEGIIGRFELVRGKGSPLIESLVTDLVDPMGIALD 816
            R  +  E++ + +   VT +QA   D    A+ +D +E  LY+SN  S++++R+ L  S +E    +VG    +A+D  N+YIY+T+N  G   R E+ RG GS        D+ +P GIA+D
Sbjct:   36 RVIKSIELSSNKISSNVTELQA--HDGRVLAVAVDMEEKTLYFSNQVSRTIKRIDLKSSKIEDVASEVGYCEDIAIDWVNKYIYWTDNNNG---RIEMSRGNGSDRKVFFDRDVQNPRGIAVD 153
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BLAST of mRNA_C-tenellus_contig7792.1.1 vs. uniprot
Match: A0A2G4JN51_9BACT (3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Acidobacterium sp. TaxID=1872119 RepID=A0A2G4JN51_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 8.150e-5
Identity = 62/250 (24.80%), Postives = 111/250 (44.40%), Query Frame = 1 
Query:  532 PHALVLDKQEGFLYYSNIASQ-----SVERVALNGSAMEVFMPDVGLVYG--MALDTDNRYIYYTENQEGIIGRFELVRGKGSPLIESLVTDLVDP---------MGIALDLDGDGLFFTLYRGVIGWAKRNISYTELNSLNTTKNFSVIRQMDTAVRLDGIAVARSDAINDPTELRLYWTESG---PWHVIQRSTVNGLGVETLVRSGINGGDILWPRGLILDPSGSGIYFTEFLGTVRWLSTLGDGED 1224
            P  + +D + G +Y++N+        S+ER  L+GS +   +   G   G  + LD  N  +Y+++ +EG+  R   V   GS L   + T   D          +G+A+D+ G  +++T   G       N+      +L+  +  + I + D  +  DG+     D   D  +  LYWT+ G     + + R+T++G    T++  G   G+ +   G+ LD  G  ++ T+  G V  L    DG D
Sbjct:   49 PDGIAIDVEAGHIYWTNMGDYAADDGSIERSNLDGSNVTTIVKAGGTWTGKQLVLDKQNGRLYWSD-REGL--RVMRVNLDGSGLETLVETGRGDEARKDQRNWCVGMAVDVAGGKIYWTQKGG----DNANVGTIRRANLDLPRGQTAINRSDIEILFDGLPEP-IDLELDLAKRHLYWTDRGNPPDGNTVNRTTLDGPHTRTILAGGF--GETI---GIALDLQGGRMFLTDLRGNVYSLKL--DGSD 283
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7792.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KFF8_9PHAE1.860e-8839.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0009E4FA154.010e-1034.15low-density lipoprotein receptor-related protein 5... [more]
A0A2G4JN51_9BACT8.150e-524.803-hydroxyacyl-CoA dehydrogenase n=1 Tax=Acidobacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7792contigC-tenellus_contig7792:2681..4136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4787.PITG_10380T0
Model size1344
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.89e-15
EggNOG OGs2CF4C@1|root,2S2RP@2759|Eukaryota,3QH10@4776|Peronosporales
Ec32 ortholog descriptionSix-bladed beta-propeller, TolB-like
Ec32 orthologEc-06_002340.1
Cds size1344
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790058.8780832-CDS-C-tenellus_contig7792:2680..28011680790058.8780832-CDS-C-tenellus_contig7792:2680..2801Choristocarpus tenellus KU2346CDSC-tenellus_contig7792 2681..2801 +
1680790058.8917718-CDS-C-tenellus_contig7792:2913..41361680790058.8917718-CDS-C-tenellus_contig7792:2913..4136Choristocarpus tenellus KU2346CDSC-tenellus_contig7792 2914..4136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7792.1.1prot_C-tenellus_contig7792.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7792 2681..4136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7792.1.1

>prot_C-tenellus_contig7792.1.1 ID=prot_C-tenellus_contig7792.1.1|Name=mRNA_C-tenellus_contig7792.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=448bp
TLIFPSSFEDGLAFATSRGVFQDFSLDENSVRHYGVVVDEDTGDVYIGTS
VAIKKLSQQLDKSWTKSTIVGGWVEYQVVGYNLGVGMDDVVHLSVLGVEC
ATILYESSNSLRCISGDSNLGHSDSGEGITAADFIVQTRNGGWSEGGYPR
DFEETEIADHSLKPIVTFVQASFRDLSPHALVLDKQEGFLYYSNIASQSV
ERVALNGSAMEVFMPDVGLVYGMALDTDNRYIYYTENQEGIIGRFELVRG
KGSPLIESLVTDLVDPMGIALDLDGDGLFFTLYRGVIGWAKRNISYTELN
SLNTTKNFSVIRQMDTAVRLDGIAVARSDAINDPTELRLYWTESGPWHVI
QRSTVNGLGVETLVRSGINGGDILWPRGLILDPSGSGIYFTEFLGTVRWL
STLGDGEDPPVTLLRADTYAAAVAVKSKIGKAKRQGIDGSFFMEGLH*
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mRNA from alignment at C-tenellus_contig7792:2681..4136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7792.1.1 ID=mRNA_C-tenellus_contig7792.1.1|Name=mRNA_C-tenellus_contig7792.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1456bp|location=Sequence derived from alignment at C-tenellus_contig7792:2681..4136+ (Choristocarpus tenellus KU2346)
ACGTTGATCTTTCCGAGCAGCTTCGAGGATGGCCTGGCCTTTGCAACGTC
ACGCGGTGTTTTCCAGGATTTCTCACTCGATGAAAATAGTGTACGCCACT
ATGGAGTTGTGGTCGACGAAGGTGCGTAACTCCTACACTGATCTTATCAT
CCTCGTGTGCTAGAATCTCATCTCGCCTGCTATTCTCTGACCCTTCGCAA
CCTTAGTTTCTTCTCACCTTGTCCATACCACAGATACTGGGGACGTGTAT
ATTGGGACATCCGTTGCCATCAAAAAGCTAAGTCAGCAATTAGACAAGTC
TTGGACGAAGAGCACAATTGTTGGTGGCTGGGTGGAATATCAAGTAGTTG
GGTACAACCTCGGTGTGGGTATGGATGATGTAGTACATCTATCTGTTCTA
GGAGTCGAATGCGCAACAATATTATATGAATCTTCCAATAGTTTAAGGTG
CATATCCGGAGATTCGAATCTCGGTCACAGTGACAGTGGAGAAGGTATCA
CCGCAGCAGACTTTATTGTGCAGACCAGGAACGGTGGGTGGAGCGAGGGA
GGTTACCCGAGGGATTTTGAGGAAACTGAGATAGCTGACCATTCGCTAAA
GCCCATCGTAACATTTGTTCAAGCCTCGTTCAGAGACTTGAGTCCACATG
CCCTGGTCTTAGACAAGCAAGAAGGCTTCTTGTACTACTCCAATATTGCC
TCTCAATCGGTTGAGAGGGTAGCACTCAATGGCTCGGCAATGGAAGTTTT
CATGCCTGATGTGGGTCTTGTGTACGGTATGGCCCTGGATACCGACAATA
GATACATATATTACACAGAGAACCAAGAGGGAATAATTGGTAGATTTGAA
TTGGTGAGGGGGAAAGGTAGTCCTTTGATTGAGTCTCTTGTTACTGACCT
CGTCGATCCAATGGGTATTGCTCTAGATCTAGATGGTGATGGTCTGTTTT
TTACCCTTTACAGAGGGGTAATTGGGTGGGCGAAGCGAAACATCTCCTAC
ACTGAACTCAACTCTCTGAACACAACTAAGAACTTCTCTGTGATCCGACA
GATGGACACCGCTGTTCGACTTGATGGAATTGCAGTAGCAAGATCTGACG
CTATCAATGACCCCACTGAATTGCGGCTTTACTGGACAGAATCTGGGCCA
TGGCATGTGATTCAACGCTCTACTGTTAATGGTTTAGGAGTAGAAACTTT
GGTACGGTCCGGTATTAATGGTGGGGATATCTTGTGGCCTCGAGGCTTGA
TCCTTGACCCATCGGGATCTGGCATATACTTCACAGAGTTTCTTGGCACA
GTTCGTTGGCTTTCTACCTTGGGGGATGGCGAGGATCCTCCTGTTACACT
GTTACGGGCTGATACATATGCTGCAGCAGTAGCAGTGAAGTCTAAAATAG
GCAAAGCCAAGAGGCAGGGTATTGATGGGAGTTTCTTCATGGAGGGATTG
CACTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7792:2681..4136+

>mRNA_C-tenellus_contig7792.1.1 ID=mRNA_C-tenellus_contig7792.1.1|Name=mRNA_C-tenellus_contig7792.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1344bp|location=Sequence derived from alignment at C-tenellus_contig7792:2681..4136+ (Choristocarpus tenellus KU2346)
ACGTTGATCTTTCCGAGCAGCTTCGAGGATGGCCTGGCCTTTGCAACGTC
ACGCGGTGTTTTCCAGGATTTCTCACTCGATGAAAATAGTGTACGCCACT
ATGGAGTTGTGGTCGACGAAGATACTGGGGACGTGTATATTGGGACATCC
GTTGCCATCAAAAAGCTAAGTCAGCAATTAGACAAGTCTTGGACGAAGAG
CACAATTGTTGGTGGCTGGGTGGAATATCAAGTAGTTGGGTACAACCTCG
GTGTGGGTATGGATGATGTAGTACATCTATCTGTTCTAGGAGTCGAATGC
GCAACAATATTATATGAATCTTCCAATAGTTTAAGGTGCATATCCGGAGA
TTCGAATCTCGGTCACAGTGACAGTGGAGAAGGTATCACCGCAGCAGACT
TTATTGTGCAGACCAGGAACGGTGGGTGGAGCGAGGGAGGTTACCCGAGG
GATTTTGAGGAAACTGAGATAGCTGACCATTCGCTAAAGCCCATCGTAAC
ATTTGTTCAAGCCTCGTTCAGAGACTTGAGTCCACATGCCCTGGTCTTAG
ACAAGCAAGAAGGCTTCTTGTACTACTCCAATATTGCCTCTCAATCGGTT
GAGAGGGTAGCACTCAATGGCTCGGCAATGGAAGTTTTCATGCCTGATGT
GGGTCTTGTGTACGGTATGGCCCTGGATACCGACAATAGATACATATATT
ACACAGAGAACCAAGAGGGAATAATTGGTAGATTTGAATTGGTGAGGGGG
AAAGGTAGTCCTTTGATTGAGTCTCTTGTTACTGACCTCGTCGATCCAAT
GGGTATTGCTCTAGATCTAGATGGTGATGGTCTGTTTTTTACCCTTTACA
GAGGGGTAATTGGGTGGGCGAAGCGAAACATCTCCTACACTGAACTCAAC
TCTCTGAACACAACTAAGAACTTCTCTGTGATCCGACAGATGGACACCGC
TGTTCGACTTGATGGAATTGCAGTAGCAAGATCTGACGCTATCAATGACC
CCACTGAATTGCGGCTTTACTGGACAGAATCTGGGCCATGGCATGTGATT
CAACGCTCTACTGTTAATGGTTTAGGAGTAGAAACTTTGGTACGGTCCGG
TATTAATGGTGGGGATATCTTGTGGCCTCGAGGCTTGATCCTTGACCCAT
CGGGATCTGGCATATACTTCACAGAGTTTCTTGGCACAGTTCGTTGGCTT
TCTACCTTGGGGGATGGCGAGGATCCTCCTGTTACACTGTTACGGGCTGA
TACATATGCTGCAGCAGTAGCAGTGAAGTCTAAAATAGGCAAAGCCAAGA
GGCAGGGTATTGATGGGAGTTTCTTCATGGAGGGATTGCACTGA
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