mRNA_C-tenellus_contig7674.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7674.1.1
Unique NamemRNA_C-tenellus_contig7674.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7674.1.1 vs. uniprot
Match: D7G220_ECTSI (FYR N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G220_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 7.010e-26
Identity = 71/178 (39.89%), Postives = 96/178 (53.93%), Query Frame = 1 
Query:    1 AHRRARTEMKKFLATRKFPVQVGVVRVHSLGKIKPRGGYHTRERLVPIGFRASRLEHSRRHDSVVHCFLEIIEEPVIPAQELTAQTPGGQGGGATGKLGGEGVGAGTSLLDNGDGFTDLGKAKGDLVGGGAGEGGNVQK-VAMYKVSVDCGTEPLEWFRGSTPGKAWRAALRAMGYEV 531
            AHRRAR E+K+F A+RKFP  VGVV+VHSLGK+KP  G++   RL P+GFRASR E S   +S+VHC +E++E   +P  E      GG                            D         GG AG+GG   K VA+++V++         F+  + GKAWRAAL+++G EV
Sbjct:  432 AHRRARAELKRFAASRKFPTNVGVVQVHSLGKVKPEPGFYALGRLAPVGFRASRTERSPDDESLVHCVMEVVE---VPDPEEAGTADGGSADAPAXXXXXXXXXXXXXXXXXXXXXXDDAGRPPPEAGGEAGDGGGTAKTVAVFRVTLSGLKGKRGTFQDVSAGKAWRAALQSIGAEV 606
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7674.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G220_ECTSI7.010e-2639.89FYR N-terminal domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7674contigC-tenellus_contig7674:1103..5681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size540
Hectar predicted targeting categorymitochondrion
Exons3
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790051.0123205-UTR-C-tenellus_contig7674:1102..11261680790051.0123205-UTR-C-tenellus_contig7674:1102..1126Choristocarpus tenellus KU2346UTRC-tenellus_contig7674 1103..1126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790051.025118-CDS-C-tenellus_contig7674:1126..11981680790051.025118-CDS-C-tenellus_contig7674:1126..1198Choristocarpus tenellus KU2346CDSC-tenellus_contig7674 1127..1198 +
1680790051.0354338-CDS-C-tenellus_contig7674:3396..36991680790051.0354338-CDS-C-tenellus_contig7674:3396..3699Choristocarpus tenellus KU2346CDSC-tenellus_contig7674 3397..3699 +
1680790051.0453424-CDS-C-tenellus_contig7674:5540..56811680790051.0453424-CDS-C-tenellus_contig7674:5540..5681Choristocarpus tenellus KU2346CDSC-tenellus_contig7674 5541..5681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7674.1.1prot_C-tenellus_contig7674.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7674 1127..5681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7674.1.1

>prot_C-tenellus_contig7674.1.1 ID=prot_C-tenellus_contig7674.1.1|Name=mRNA_C-tenellus_contig7674.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=172bp
MKKFLATRKFPVQVGVVRVHSLGKIKPRGGYHTRERLVPIGFRASRLEHS
RRHDSVVHCFLEIIEEPVIPAQELTAQTPGGQGGGATGKLGGEGVGAGTS
LLDNGDGFTDLGKAKGDLVGGGAGEGGNVQKVAMYKVSVDCGTEPLEWFR
GSTPGKAWRAALRAMGYEVGS*
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mRNA from alignment at C-tenellus_contig7674:1103..5681+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7674.1.1 ID=mRNA_C-tenellus_contig7674.1.1|Name=mRNA_C-tenellus_contig7674.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4579bp|location=Sequence derived from alignment at C-tenellus_contig7674:1103..5681+ (Choristocarpus tenellus KU2346)
GCACACAGGCGCGCAAGGACAGAGATGAAGAAGTTTCTGGCCACAAGAAA
ATTCCCGGTGCAGGTTGGTGTTGTACGCGTTCATTCCCTTGGCAAGGTGA
GAGGAATTGATGACATGAGATGGGGATGGGGTTGGGGAATGTACTTGTGC
TGGTGTAATAGTTGCTATTAACACAGTTGATGATTGTGAGTTTAGAGCGT
GTTCCTGTCGTATAACATTTGTGTGCGATGGTTTTATTCCTGAGGTGGTA
TGGGGTCGCATTCTATATTTTGTGGTCATGTAGTGCACTATGCCTGTTAT
ACGTTGGGGTGTCAGGACCGTTACTATGTGGCAATTTGGTGCTTCAAGTT
GTTGCACTTGTACATTGTTTGATGTCTTTGGATGTACTATCGATAAAAGC
TCGTCCAAGTTAAGAGTTTGAGGTGTAGGGATATACTCGAAATTTGTGTA
CTAGAGAGAGAGAGTTTGAAAGATGTGGATGTGCTTTGAAGTTTATGTAC
ACGAGGTTTGAAAGATGTGGATGTGTACTTTGATGTGTACAACCTTCCAT
GTAGTTTGGTGTGTGTACCAAGTGCTCACTTACGAATGCATAAAATGTTA
TTTTTGACTCAAAGCATCTGGGGGGGGGGGGGGGTGGCGGCTGTCCATTT
GACGTCAATTTTTTCATGTCGTGATTTTTGGATGATTTGGTTACATATGT
CGGATGGATAATGTAAATGCAATTTTGCTGATTTTGACCCAAATGGACAT
TTGGTGTAGACCTCCCCCCCCCCCCAGATACTTCGGGTATTTTCAGTCTT
TCATTATTTGAAGTCTTTGGTGTTGGTTGTTGCCCAGTGGCTGGAAGGAG
AGGTTGGTATGTGCGCTGGCCCAAAGGCTTCAAATTTCATTCCCCTAGTT
TTCCCTGTTTCTGCTGTGCATAATTCTCCTAGTAAATGCAGTTACAATTT
TCTATCTGGGAAGATGTTTGCATTGACTGCTAGAGTTGATGTTGTAAAAT
TCTTGAGCAGCTCACATGGGTCTTTGACAGACCTGAGCTTTGAATTGATA
CTGATGCACACGGCGAGTTCATTCAAGTAAAGTGGCTGAAAAAAGGATGT
AGCTCTAACCCTAACCCTATATAATAGGTAAAGTCTCTTTTTTCTGTACT
TTTTGGATCATTTTTCGATTCTCGTAGCCCTCAATGGCGTCGTAGCGTAC
TATTGTTTTCTTTTTTTTGGCTGAAATAGTGGGGTCGTAAAACAACATAT
TTTCTGGACGTGAGTTGGATACCGTTGATGCATGGCTAGGTCGATAGCCT
AAATGATATCGATACCGCCGTAGGCACTGTTGTAAAATGCACACGTCCTT
TCATGACTGGACAACCTGGATTTTGTTCTGTTGAATAGGTAATAGGTCTT
GGGTTTCTTGAGTAGAGACGTTGATGAGTGAGATACTCGTACATTGGCAT
CACTCCTTTTTTGTATACTTTACAGCGGTTTTTATCTTTGTACAAATACA
AAATAATACCAATGTGTTACACGCATTTCTATTCTATTTTTTTTTTGCTC
TAGTACTAGGGATGAACTAACACCCCTAGAATGTTTCGCGATATGTACAA
TTTTTTTAAGGTTAGGGTTGAGTCTTTTGACCATTTTTTTTTTTTGGCTG
TGTATCGAATGCAGTTACACGATATAGGAAGGGTTAATAATGGATTTGGA
GTTGATTCAGCCCTCTTATTGGTCGGGTATGTTTGATGTCCTCTGTAACT
AGACCTGCCTACCTTTGGGCAGTTCGGTTAGCTTGAAAATCAAGTTTTGT
TGAGAAAATGGGAATGCTGACACAATTATTATCGATTTTAATCCTTTCGA
CTTGGTGTATTTATTGTTGTGTAGTCTAGATAGTCTCGATACTTTCTCTG
TCAAGGACAGCCTTAAGTCTGATTTTTTACCTTGAATTTTGGGAACCGTT
CCCTGCAATTTACTAGACCCTTGCTTCAATGTTTCCCCCGCCCCCACCCC
CACCCCTGACTCTGTGCATGTACATGTTTTTTTCAAATTTGTTTTAACGC
TGTTGTGCCTGTATCTTCTTGGTTTCTTGTGTGGTGGGTTTTATTAAAAA
TGACACATTAACCAAAAAAAAATGTGTAGTTGTGAAATTTCTAAACATAC
ATCGTAAAATATCTATATATATAGATATATATCATTATTTTTTTCTTTGT
TCATTCAAAATTAAATTAATTACATGGTATTTCCTTTTTTTTGTGTGTGT
GTGTGTTAATTTGATGTATAATTTAAAATCCGCTAAAAAAAAAGATAAAA
CCCAGGGGAGGGTACCACACTCGAGAAAGGCTAGTTCCCATTGGATTCCG
TGCGTCTCGCCTTGAGCACTCACGACGTCATGACAGCGTCGTGCACTGCT
TCTTGGAGATCATTGAGGAGCCAGTGATACCAGCACAGGAATTAACAGCT
CAAACACCAGGTGGACAAGGTGGGGGGGCAACAGGAAAGCTTGGTGGAGA
AGGGGTAGGGGCAGGTACATCGTTACTGGACAATGGCGATGGGTTTACGG
ACCTTGGGAAGGCGAAAGGAGATTTGGTGGGAGGGGGTGCTGGCGAAGTG
GGTGCAGATACAGCAGTGCATTCTTCACAAGGGAGTCTTTTGGGTGTGGA
GGTGAGTTTGTGAGGTCCTGCTTGGGGAAGGCTGAGGGTAAGGTGTAGGT
TAGGTTGGCATTGAGAGGGTCATTGGGTTGGATTTTTCTTGAGGTTTTGG
TAATGAAGGTGGTTAATATTTCTAGTTTTTTTTGTTGTTGTGTGTGTAGA
TATATTTTTTTTGCTTGTTTGCCATTGTTGCATCCATTTGATTTTTGATA
TATTTTTGTTACCGCAGGATGAAATATGATGTGTGATGTATGATCTGATA
GTGATGAAATATGAAATATGATGTATGAAATATGATGTATGATATATGAT
GTGATAGTGATGAAATATGATGTATGATATATGAAATATGATGTATGATG
TATGTTGTGATAGTGAAGAGTACAAGAAAGTGAAGGAAAATATGGGACGG
TGGAGGGTATATGGGGCAGGAAAAGGTACGGGAGGGAATAGGATAATGTA
AGACTGTAAAGGGTACAAGTATGGTGATGAAGCCTATAGGAGAGTGATGG
GGAATGGAAAGATAACTTCAAATAGAATTATGTAAGAATGGGCCAGGAGC
TTTCTATGTACTCTGTTTGAATTGGAAGAACACATACTGTGTGGAAATAA
AAAAAAGAACGAAGAAAGTATGAGACAATAAAAAAGGAGATTTACATGGA
AAAACATGCAGTTGGCAATAATACAAATATATATATATATATATATATAT
ATATATATATTTATTATGTATGTATTATGTGTGTTAGAAAACAATCAACA
TTTAATTTTTTTTGGGTGGGATCTCGATCAGTGTGGATGGACAAGGTGTG
ACCCTGAGTTTGCTCCTTTTTTTGTACAGAAGTTTGGTGATGTCTGTGGA
CTCGATGAACACCTCTTTTGTCCTAGTTATGAGGTGGGGGTTAAGTAGTG
ACCCTTTGAAAGCTAGATCGGGTTGCTATTTTCTCTTTTTTTTTTCTTTT
TCCCTTTGTTTTTCTTTCTATGTAGTTACATTACTCTTCAGTAATGTAGG
AAAATATAATATATATATATAGTCGGTTGTATAGGGTTCATAGGAGAAGA
TAGGACAAGAAAGGATACATGACAGTTCAAGGGTACACGGCAGCACGGAC
CTGACCTGAAGTGAGAGGTATATATAATACATTATATCACCCTTTCAACC
TATGACCCCGTGAAAGAGTGCATACTGCATGGAGCTTCAGGTACTGTAGA
CGTAGTCATGTCACTCGGTGTATGTTTTTGATGATCTCTTAAGATTTTTT
TTGTATATTCTGAAATATCTTTTTCTATCTCTCCTTCCTTTCTTTATATA
TTCCTATTGCAGTGCTCTCTCATTTTTTATTTTTTAAATGTAATGAGAAA
AAATTCCTTGTCCCTTCTTTCCAACTTTGTCTGGACTCTTCTTTTTTTTT
TATCTTTTTATGTTTTTTTTCGCCATGTTCACCGGGGTTTTTTCTAACAG
AATATTCTTCGTATTTTCTGATGATCTTCCCAAATTCCTATCACTTGTAG
ATTGTTGTGCTTTGTTTTGTTTTGTTTTGTTTTATTTTTATTTATTTTTA
ATTTTATTATTTCTTCTTGTACCCCTTCTTTGTTCTCACTTATCTTTCCA
GGTTTGATATATCATAGTTTGATTGTTTCCCTTGCAATTAATGCCTAGTA
TTACGTTATTTCATTGTCTTGTCCTTTCATGCTCTGTTGGCGACCCAGGG
GCCATCCTCTGCTGACCCTGGGGCAGGAGCGAGACCAGGGAAGGAGAAGA
CCACAAGGGCGGGAGGAGGAGGCGGTCGAGGGGGTAAGGGAGGGAATGTT
CAAAAGGTAGCAATGTACAAGGTGTCTGTGGATTGTGGTACAGAGCCATT
AGAGTGGTTCAGGGGTTCCACACCAGGGAAGGCTTGGAGGGCAGCCTTGA
GGGCCATGGGATATGAGGTGGGTTCTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7674:1103..5681+

>mRNA_C-tenellus_contig7674.1.1 ID=mRNA_C-tenellus_contig7674.1.1|Name=mRNA_C-tenellus_contig7674.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=516bp|location=Sequence derived from alignment at C-tenellus_contig7674:1103..5681+ (Choristocarpus tenellus KU2346)
ATGAAGAAGTTTCTGGCCACAAGAAAATTCCCGGTGCAGGTTGGTGTTGT
ACGCGTTCATTCCCTTGGCAAGATAAAACCCAGGGGAGGGTACCACACTC
GAGAAAGGCTAGTTCCCATTGGATTCCGTGCGTCTCGCCTTGAGCACTCA
CGACGTCATGACAGCGTCGTGCACTGCTTCTTGGAGATCATTGAGGAGCC
AGTGATACCAGCACAGGAATTAACAGCTCAAACACCAGGTGGACAAGGTG
GGGGGGCAACAGGAAAGCTTGGTGGAGAAGGGGTAGGGGCAGGTACATCG
TTACTGGACAATGGCGATGGGTTTACGGACCTTGGGAAGGCGAAAGGAGA
TTTGGTGGGAGGGGGTGCTGGCGAAGGAGGGAATGTTCAAAAGGTAGCAA
TGTACAAGGTGTCTGTGGATTGTGGTACAGAGCCATTAGAGTGGTTCAGG
GGTTCCACACCAGGGAAGGCTTGGAGGGCAGCCTTGAGGGCCATGGGATA
TGAGGTGGGTTCTTAG
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