mRNA_C-tenellus_contig7663.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7663.1.1
Unique NamemRNA_C-tenellus_contig7663.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7663.1.1 vs. uniprot
Match: D8LRK2_ECTSI (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRK2_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.590e-20
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   16 FENWSPNFTSEERDYRFEDPAVPSVTMPAAQPDSPGDVQVRIDNDIVEKTGEETETYCNGDQAQYLGEDGYWW 234
            F NWSP+       YRF DPA+PS  +P A P+SPGDV +   N +V KTG  TETYCNGD A+Y GEDGYW+
Sbjct:  513 FTNWSPDVDGAAAGYRFSDPALPSFDIPEAVPNSPGDVLLTTSNSVVTKTGATTETYCNGDSAEYSGEDGYWY 585
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BLAST of mRNA_C-tenellus_contig7663.1.1 vs. uniprot
Match: D7G672_ECTSI (WSC domain-containing protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G672_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.590e-20
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   16 FENWSPNFTSEERDYRFEDPAVPSVTMPAAQPDSPGDVQVRIDNDIVEKTGEETETYCNGDQAQYLGEDGYWW 234
            F NWSP+       YRF DPA+PS  +P A P+SPGDV +   N +V KTG  TETYCNGD A+Y GEDGYW+
Sbjct:  512 FTNWSPDVDGAAAGYRFSDPALPSFDIPEAVPNSPGDVLLTTSNSVVTKTGATTETYCNGDSAEYSGEDGYWY 584
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BLAST of mRNA_C-tenellus_contig7663.1.1 vs. uniprot
Match: D7G7E4_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E4_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 4.020e-20
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   16 FENWSPNFTSEERDYRFEDPAVPSVTMPAAQPDSPGDVQVRIDNDIVEKTGEETETYCNGDQAQYLGEDGYWW 234
            F NWSP+       YRF DPA+PS  +P A P+SPGDV +   N +V +TG  TETYCNGD A+Y GEDGYW+
Sbjct:  452 FTNWSPDVDGAAAGYRFSDPALPSFDIPEAVPNSPGDVLLTTSNSVVTRTGATTETYCNGDSAEYSGEDGYWY 524
[Close]
BLAST of mRNA_C-tenellus_contig7663.1.1 vs. uniprot
Match: D7FPM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM5_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 2.320e-17
Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   16 FENWSPNFTSEERDYRFEDPAVPSVTMPAAQPDSPGDVQVRIDNDIVEKTGEETETYCNGDQAQYLGEDGYWW 234
            F N+SP F      +RFEDPAVP + MP AQP SPGD+Q+   N +VE  G E    CNGD A+YLGEDG W+
Sbjct:  178 FTNYSPTFDVNMALFRFEDPAVPGIEMPLAQPLSPGDIQLNEGNPVVELDGSEVSWGCNGDMAEYLGEDGEWY 250
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7663.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LRK2_ECTSI1.590e-2057.53WSC domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G672_ECTSI1.590e-2057.53WSC domain-containing protein n=3 Tax=Ectocarpus s... [more]
D7G7E4_ECTSI4.020e-2056.16WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FPM5_ECTSI2.320e-1754.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7663contigC-tenellus_contig7663:6343..6576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790050.6709526-CDS-C-tenellus_contig7663:6342..65761680790050.6709526-CDS-C-tenellus_contig7663:6342..6576Choristocarpus tenellus KU2346CDSC-tenellus_contig7663 6343..6576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7663.1.1prot_C-tenellus_contig7663.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7663 6343..6576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7663.1.1

>prot_C-tenellus_contig7663.1.1 ID=prot_C-tenellus_contig7663.1.1|Name=mRNA_C-tenellus_contig7663.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=78bp
MPTCRFENWSPNFTSEERDYRFEDPAVPSVTMPAAQPDSPGDVQVRIDND
IVEKTGEETETYCNGDQAQYLGEDGYWW
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mRNA from alignment at C-tenellus_contig7663:6343..6576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7663.1.1 ID=mRNA_C-tenellus_contig7663.1.1|Name=mRNA_C-tenellus_contig7663.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=234bp|location=Sequence derived from alignment at C-tenellus_contig7663:6343..6576+ (Choristocarpus tenellus KU2346)
ATGCCCACTTGCAGGTTCGAAAACTGGTCACCGAATTTCACATCTGAGGA
GAGAGACTACCGCTTTGAGGACCCAGCAGTACCCTCTGTGACCATGCCAG
CCGCACAGCCAGACTCACCTGGAGATGTCCAGGTGAGGATAGACAATGAT
ATCGTGGAGAAGACAGGGGAAGAGACGGAGACGTATTGCAATGGAGATCA
AGCACAGTACCTTGGTGAAGATGGGTACTGGTGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7663:6343..6576+

>mRNA_C-tenellus_contig7663.1.1 ID=mRNA_C-tenellus_contig7663.1.1|Name=mRNA_C-tenellus_contig7663.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=234bp|location=Sequence derived from alignment at C-tenellus_contig7663:6343..6576+ (Choristocarpus tenellus KU2346)
ATGCCCACTTGCAGGTTCGAAAACTGGTCACCGAATTTCACATCTGAGGA
GAGAGACTACCGCTTTGAGGACCCAGCAGTACCCTCTGTGACCATGCCAG
CCGCACAGCCAGACTCACCTGGAGATGTCCAGGTGAGGATAGACAATGAT
ATCGTGGAGAAGACAGGGGAAGAGACGGAGACGTATTGCAATGGAGATCA
AGCACAGTACCTTGGTGAAGATGGGTACTGGTGG
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