mRNA_C-tenellus_contig762.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig762.3.1
Unique NamemRNA_C-tenellus_contig762.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig762.3.1 vs. uniprot
Match: D7FYW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYW2_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 3.480e-36
Identity = 83/184 (45.11%), Postives = 111/184 (60.33%), Query Frame = 2 
Query:  176 STLTMATGFGKVDDQMKPRGAGRGTKAFERQMRSFDGLKKAGAEIVDVYAHHPGGDNKFYFAGKVARSHGISVDQSLQWHRELIVDHVRMLESSLQ---LPLRIFTAPGNTEVSVAKNELDLCRALTEGS---VDLSGIRGPEVGFMPETYERGQPYYYCRKDEAGKSLGPPVQPKIEGFPGVI 709
            S + M  GFG  + + K  G GRG  A++RQ++S+ GL +AGAE  DVY H  G D+KF F GK A S GI+V Q+LQ+ R LI+ HV +LE   +    P+RIFTAP N+E+ VA+N  DL R L  G    V +  +   EVG  PE YE G+PY+Y RK + GK   PP +  IE    ++
Sbjct:   52 SRVMMMGGFGGPEKKKKVVGVGRGQDAYQRQVKSYHGLTEAGAEGADVYVHREG-DDKFIFMGKAAWSSGITVQQALQFQRGLILGHVELLEPMWKDKPAPMRIFTAPINSEIEVARNIHDLVRVLGPGKGKDVKVDKLTPQEVGLRPELYELGEPYFYVRKLDDGKCPAPPSEVMIETMDNLV 234
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig762.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYW2_ECTSI3.480e-3645.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig762contigC-tenellus_contig762:3948..6003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr45146
Model size1805
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons2
Evalue1.16e-10
EggNOG OGs2EIZK@1|root,2SP9S@2759|Eukaryota,2XGCX@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002700.1
Cds size681
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790047.7724044-UTR-C-tenellus_contig762:3947..50401680790047.7724044-UTR-C-tenellus_contig762:3947..5040Choristocarpus tenellus KU2346UTRC-tenellus_contig762 3948..5040 -
1680790047.8126662-UTR-C-tenellus_contig762:5972..60031680790047.8126662-UTR-C-tenellus_contig762:5972..6003Choristocarpus tenellus KU2346UTRC-tenellus_contig762 5973..6003 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790047.7879775-CDS-C-tenellus_contig762:5040..53431680790047.7879775-CDS-C-tenellus_contig762:5040..5343Choristocarpus tenellus KU2346CDSC-tenellus_contig762 5041..5343 -
1680790047.8017836-CDS-C-tenellus_contig762:5594..59721680790047.8017836-CDS-C-tenellus_contig762:5594..5972Choristocarpus tenellus KU2346CDSC-tenellus_contig762 5595..5972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig762.3.1prot_C-tenellus_contig762.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig762 5041..5972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig762.3.1

>prot_C-tenellus_contig762.3.1 ID=prot_C-tenellus_contig762.3.1|Name=mRNA_C-tenellus_contig762.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=227bp
MVSKTWVSLCVSEGRMGRSRGLLILFCCLVQGQAFFNPLCCSGVVRYEST
LTMATGFGKVDDQMKPRGAGRGTKAFERQMRSFDGLKKAGAEIVDVYAHH
PGGDNKFYFAGKVARSHGISVDQSLQWHRELIVDHVRMLESSLQLPLRIF
TAPGNTEVSVAKNELDLCRALTEGSVDLSGIRGPEVGFMPETYERGQPYY
YCRKDEAGKSLGPPVQPKIEGFPGVI*
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mRNA from alignment at C-tenellus_contig762:3948..6003-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig762.3.1 ID=mRNA_C-tenellus_contig762.3.1|Name=mRNA_C-tenellus_contig762.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2056bp|location=Sequence derived from alignment at C-tenellus_contig762:3948..6003- (Choristocarpus tenellus KU2346)
GGATACTTGTAGGTTGTACGACTCTTTAAACATGGTAAGTAAAACATGGG
TCAGTCTTTGTGTTAGTGAAGGAAGGATGGGACGGTCACGGGGCCTCCTG
ATCTTGTTTTGTTGTCTCGTCCAAGGTCAGGCCTTCTTCAATCCGCTTTG
CTGCTCTGGAGTTGTGCGATATGAGTCTACCTTAACAATGGCAACAGGCT
TTGGAAAGGTGGATGATCAGATGAAACCACGCGGTGCTGGTCGAGGTACC
AAGGCTTTCGAGAGACAAATGCGTTCTTTCGATGGACTAAAAAAGGCTGG
TGCTGAGATTGTCGATGTATACGCGCACCACCCTGGAGGGGATAACAAGT
TCTACTTCGCTGGGAAAGTTGCAAGGAGTCATGGCATTTCCGTCGACCAG
TCCTTACAAGTAAGCCGTAGCTACATCCTCCTTGGTCCTGAGGAAGAACA
TTATTACATGTGTTGCTGATGCCTTTCATTCGACTGTTCCTCAACGTACT
CATTCTACGATTGGCATAAAATTACCATCGAGGTTGGAGTTTGGGTGGGT
ATTGGAGTTAGCGATTGATTACTCGTTTGTATATGTTTAACTGTAAATGA
CCACAACATGAGTTTGACCACGTTCCCCATGCTCCTATATTTCACCCGAT
CGTTCGATAGTGGCATCGTGAACTCATCGTGGACCACGTGCGAATGCTGG
AGTCATCTTTGCAACTTCCGCTTCGCATTTTCACCGCACCTGGGAACACC
GAAGTGTCTGTGGCAAAAAACGAATTGGACCTCTGCCGGGCTTTGACGGA
GGGTAGCGTCGACCTGAGTGGTATTCGTGGGCCTGAGGTTGGGTTTATGC
CGGAAACATATGAACGTGGGCAACCTTACTATTACTGCCGAAAAGATGAA
GCTGGTAAATCCTTAGGTCCTCCAGTTCAACCAAAAATCGAAGGCTTTCC
AGGGGTGATATAACGACGCCTTCCCCATTGCACAACCCAATTATCCATTC
CAGTTAGACTGACGGCAAACCAATAGCAGAGTTGGGGCGCAAAACCGGGA
AAGCCTTGATTCTCAGGCGAGCTTGGTGTGACCACAGGTCTTCGCGTGTC
TATGTACGTCTCGACCTGACAGCGCAAACACCAGTGTGCAGGCACTGCTG
TATGGAATAGGGATTTGTTATAATAGTCAAGACAATCCTTCACAAATGTG
AATACAATCCTGATGAACGCCACACACCTAGATGCCATTGTTATCGCTGG
TTTTATTCACACTTTGACTGACTTCTCCTTGAATTCGATTCAGTAGACCA
AACAACTCTATACCAAGCAATATGGGTTTTTTTTTTAATTACCCAGAGCT
CATCATATCTGGGGTGTATCTCATAGGATCGTATGACAGTCACAATCTGA
GAGGTCCTGCATTATGCTAAAGTCTTCGTTACTGCAGTGTCTCAATGTGC
ACCTCAAAATATCGATCATTACAAAGAAATACTTTGAACTTTTTGTAATT
GGTATGGAAGTCACCAATCAAAATCTTGTTTACACTTCAACGCCCCAGAT
GAGCTTCAAGGTTTGTCACTGCAGACCCATCATTGCATCATTTTGCTGCC
TTGGAGTTGTGTTATTTACATATTCAAGTTACATTCGAGTAATAATCACT
GACTCACTAAACCTCCACAAGTTCGAGAATAGATCCCTCATGACTGCTTG
TACATGAACTCTGCCTCAGGTACGGTTCCAATTTGCGTCCCACTACAACT
TCCAACTAGGGTCACAAAAAAAACGTTGATGGGATGGGTAATTGCCAGAA
ATCTGCTTAGCCTCTTTGTACCCACCAACCTTAACCACTTTGTCTTCAGG
ACCGAGGCTGCATGCCTGCACTTGAGTCTTTTTTTTGTTATTAATACCAG
TTGGTGCATTAATAACAGCCAGAAGTTGAATGTAGGAGACTACCACTCTA
TTATGCATCTTGTATCCAGTACTTCCCCCTATTAACTTGATTGAAATAAT
TGTGCATAGTCTACCACTGCTAAGCAATTTTGGGGCTATCACGACTATAT
AATGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig762:3948..6003-

>mRNA_C-tenellus_contig762.3.1 ID=mRNA_C-tenellus_contig762.3.1|Name=mRNA_C-tenellus_contig762.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=681bp|location=Sequence derived from alignment at C-tenellus_contig762:3948..6003- (Choristocarpus tenellus KU2346)
ATGGTAAGTAAAACATGGGTCAGTCTTTGTGTTAGTGAAGGAAGGATGGG
ACGGTCACGGGGCCTCCTGATCTTGTTTTGTTGTCTCGTCCAAGGTCAGG
CCTTCTTCAATCCGCTTTGCTGCTCTGGAGTTGTGCGATATGAGTCTACC
TTAACAATGGCAACAGGCTTTGGAAAGGTGGATGATCAGATGAAACCACG
CGGTGCTGGTCGAGGTACCAAGGCTTTCGAGAGACAAATGCGTTCTTTCG
ATGGACTAAAAAAGGCTGGTGCTGAGATTGTCGATGTATACGCGCACCAC
CCTGGAGGGGATAACAAGTTCTACTTCGCTGGGAAAGTTGCAAGGAGTCA
TGGCATTTCCGTCGACCAGTCCTTACAATGGCATCGTGAACTCATCGTGG
ACCACGTGCGAATGCTGGAGTCATCTTTGCAACTTCCGCTTCGCATTTTC
ACCGCACCTGGGAACACCGAAGTGTCTGTGGCAAAAAACGAATTGGACCT
CTGCCGGGCTTTGACGGAGGGTAGCGTCGACCTGAGTGGTATTCGTGGGC
CTGAGGTTGGGTTTATGCCGGAAACATATGAACGTGGGCAACCTTACTAT
TACTGCCGAAAAGATGAAGCTGGTAAATCCTTAGGTCCTCCAGTTCAACC
AAAAATCGAAGGCTTTCCAGGGGTGATATAA
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