mRNA_C-tenellus_contig7596.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7596.2.1
Unique NamemRNA_C-tenellus_contig7596.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig7596.2.1 vs. uniprot
Match: A0A6H5JZB9_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 9.110e-17
Identity = 55/114 (48.25%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:  835 ELKEGNESVGVDT-MPQSPMRKRQAIMNNPEEFESMDVDED-DAGLSTVPKSDETQVFLSQALREHFLFSQMRDSEVLACVGVMKPHDCLAGEVIVRQGDRGTHFYVLETGFAE 1170
            E KEG ES+ V   +P S  +KR  I+NNP+EF S     D +     VPKSDE +  LS ALREHFLF+Q+  +++ ACV VM   +  AG+ IV QG+RG+ F+V+E+G AE
Sbjct:  195 EEKEGTESMDVSPPLPSSANKKRVPIVNNPDEFASFGQGGDAEIPSPAVPKSDEARAALSNALREHFLFAQLAPTDLSACVDVMGLLEVSAGQDIVVQGERGSRFFVMESGSAE 308
[Close]
BLAST of mRNA_C-tenellus_contig7596.2.1 vs. uniprot
Match: D8LTW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW1_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 3.320e-16
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 1 
Query:  835 ELKEGNESVGVDT-MPQSPMRKRQAIMNNPEEFESMDVDED-DAGLSTVPKSDETQVFLSQALREHFLFSQMRDSEVLACVGVMKPHDCLAGEVIVRQGDRGTHFYVLETGFAE 1170
            E KEG ES+ V   +P S  +KR  I+NNP+EF S     D +     VPKSDE +  LS ALR HFLF+Q+  +++ ACV VM   +  AG+ IV QG+RG+ F+V+E+G AE
Sbjct:  116 EEKEGTESMDVSPPLPSSANKKRVPIVNNPDEFASFGQGGDAEIPSPAVPKSDEARAALSNALRGHFLFAQLTPTDLSACVDVMGLLEMSAGQDIVVQGERGSRFFVMESGSAE 229
[Close]
BLAST of mRNA_C-tenellus_contig7596.2.1 vs. uniprot
Match: A0A835YV03_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV03_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.170e-13
Identity = 49/88 (55.68%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:  907 IMNNPEEFE-SMDVDEDDAGLSTVPKSDETQVFLSQALREHFLFSQMRDSEVLACVGVMKPHDCLAGEVIVRQGDRGTHFYVLETGFA 1167
            I NNPEEFE S+D      G   +P   ET   L  ALREHFLFSQ+ +S++ ACV  M  HD  AGE I+RQGDRG+ FYVLE G A
Sbjct:    3 IHNNPEEFEESVDAGAVPEGAYKLP---ETSALLFAALREHFLFSQLAESDLRACVERMVRHDYAAGEEIIRQGDRGSEFYVLEQGAA 87
[Close]
BLAST of mRNA_C-tenellus_contig7596.2.1 vs. uniprot
Match: A0A1Z5JHK0_FISSO (cGMP-dependent protein kinase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHK0_FISSO)

HSP 1 Score: 61.2 bits (147), Expect = 1.930e-6
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:  934 SMDVDEDDAGLSTVPKSDETQVFLSQALREHFLFSQMRDSEVLACVGVMKPHDCLAGEVIVRQGDRGTHFYVLETG 1161
            S DV E    L   PK+D+ + FL +ALRE+FLF  + D E    +  M+       +VIVRQGD G +FY++E G
Sbjct:   92 SFDVTEPSLLLPKYPKTDQQKAFLRKALRENFLFRDLSDDEANDLIDAMQSQIFSQDDVIVRQGDTGDYFYIVENG 167
[Close]
BLAST of mRNA_C-tenellus_contig7596.2.1 vs. uniprot
Match: A0A7J7JIC7_BUGNE (PRKAR2B n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JIC7_BUGNE)

HSP 1 Score: 59.3 bits (142), Expect = 3.360e-6
Identity = 28/81 (34.57%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:  922 EEFESMDVDEDD-AGLSTVPKSDETQVFLSQALREHFLFSQMRDSEVLACVGVMKPHDCLAGEVIVRQGDRGTHFYVLETG 1161
            E +   D DEDD   L   PK+D  +  L++A+++  LF ++ D + +  +  MK +  + GE +++QGD G +FYV+E+G
Sbjct:  113 ERYNPEDDDEDDETALPVHPKTDRQRALLTEAVKQILLFRKLDDEQRMTVIDAMKENKVVKGETVIKQGDDGDYFYVIESG 193
[Close]
BLAST of mRNA_C-tenellus_contig7596.2.1 vs. uniprot
Match: A0A152A1F8_9MYCE (Protein kinase A regulatory subunit n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A1F8_9MYCE)

HSP 1 Score: 58.2 bits (139), Expect = 8.830e-6
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  964 LSTVPKSDETQVFLSQALREHFLFSQMRDSEVLACVGVMKPHDCLAGEVIVRQGDRGTHFYVLETG 1161
            + TVPKS ETQ  L QAL+ + +FS + + E  +    M      AG+VI+RQGD G +FYV+E G
Sbjct:   47 IPTVPKSIETQQRLQQALKMNIMFSHLEEEERESIFSAMVEVHYKAGDVIIRQGDEGDNFYVVENG 112
[Close]
BLAST of mRNA_C-tenellus_contig7596.2.1 vs. uniprot
Match: A0A8K0KGB7_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KGB7_LADFU)

HSP 1 Score: 58.2 bits (139), Expect = 1.050e-5
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:  874 MPQSPMRKRQAIMNNPEEFESMDVDEDDAGL---STVPKSDETQVFLSQALREHFLFSQMRDSEVLACVGVMKPHDCLAGEVIVRQGDRGTHFYVLETGFAE 1170
            +P  P+R+R  I   P       V E+DA       VPK  +T   LS+A+ ++ LFS + ++E       M P + L GE I+RQGD G +FYV++ G  E
Sbjct:   60 IPSQPVRRRGGISAEP-------VSEEDATSYVKKVVPKDYKTMAALSKAIAKNVLFSHLDENERSDIFDAMFPVNFLPGETIIRQGDEGDNFYVIDQGEVE 154
[Close]
BLAST of mRNA_C-tenellus_contig7596.2.1 vs. uniprot
Match: UPI000E6D69F2 (cAMP-dependent protein kinase type I regulatory subunit isoform X2 n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D69F2)

HSP 1 Score: 58.2 bits (139), Expect = 1.050e-5
Identity = 36/98 (36.73%), Postives = 52/98 (53.06%), Query Frame = 1 
Query:  886 PMRKRQAIMNNPEEFESMDVDEDDAGL---STVPKSDETQVFLSQALREHFLFSQMRDSEVLACVGVMKPHDCLAGEVIVRQGDRGTHFYVLETGFAE 1170
            P R+R AI   P       V E+DA       VPK  +T   LS+A+  + LF+ + +SE       M P  CL GE ++RQGD G +FY++++G  E
Sbjct:   84 PPRRRGAISAEP-------VTEEDATSYVKKVVPKDYKTMGALSRAIASNVLFTHLDESERADMFDAMFPVQCLPGETVIRQGDEGDNFYIIDSGEVE 174
[Close]
BLAST of mRNA_C-tenellus_contig7596.2.1 vs. uniprot
Match: UPI000644F584 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F584)

HSP 1 Score: 57.8 bits (138), Expect = 1.340e-5
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  964 LSTVPKSDETQVFLSQALREHFLFSQMRDSEVLACVGVMKPHDCLAGEVIVRQGDRGTHFYVLETG 1161
            ++ VPKS ETQ  L QAL+++ LF+ + + E  +    M   +  AG+VI+RQGD+G +FYV++ G
Sbjct:   52 ITNVPKSGETQQRLQQALQKNILFNHLEEEERNSVFAAMFEVNYKAGDVIIRQGDKGDNFYVVDIG 117
[Close]
BLAST of mRNA_C-tenellus_contig7596.2.1 vs. uniprot
Match: D3BUZ2_POLPP (Protein kinase A regulatory subunit n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BUZ2_POLPP)

HSP 1 Score: 57.0 bits (136), Expect = 2.020e-5
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:  964 LSTVPKSDETQVFLSQALREHFLFSQMRDSEVLACVGVMKPHDCLAGEVIVRQGDRGTHFYVLETGFAE 1170
            + T+PKS+ETQ  L QAL+++ +FS + + E  +    M       G+VI++QGD G +FYV++ G  +
Sbjct:   49 IPTIPKSEETQQRLDQALKKNIMFSHLEEEERNSVFAAMFEVHYKQGDVIIKQGDEGDNFYVIDQGICD 117
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7596.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JZB9_9PHAE9.110e-1748.25cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
D8LTW1_ECTSI3.320e-1647.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV03_9STRA1.170e-1355.68cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A1Z5JHK0_FISSO1.930e-642.11cGMP-dependent protein kinase n=1 Tax=Fistulifera ... [more]
A0A7J7JIC7_BUGNE3.360e-634.57PRKAR2B n=1 Tax=Bugula neritina TaxID=10212 RepID=... [more]
A0A152A1F8_9MYCE8.830e-645.45Protein kinase A regulatory subunit n=1 Tax=Tieghe... [more]
A0A8K0KGB7_LADFU1.050e-536.27Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
UPI000E6D69F21.050e-536.73cAMP-dependent protein kinase type I regulatory su... [more]
UPI000644F5841.340e-542.42hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BUZ2_POLPP2.020e-537.68Protein kinase A regulatory subunit n=1 Tax=Polysp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7596contigC-tenellus_contig7596:2172..4012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTW1
PFAMsPkinase,cNMP_binding
Model size1170
Max annot lvl2759|Eukaryota
KEGG koko:K07376
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04923,ko04970,map04022,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04923,map04970
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.7e-19
EggNOG OGsCOG0664@1|root,KOG1113@2759|Eukaryota
EC2.7.11.12
DescriptioncAMP-dependent protein kinase regulator activity
Cds size483
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790045.9498775-CDS-C-tenellus_contig7596:2171..24161680790045.9498775-CDS-C-tenellus_contig7596:2171..2416Choristocarpus tenellus KU2346CDSC-tenellus_contig7596 2172..2416 -
1680790045.9610093-CDS-C-tenellus_contig7596:3087..33251680790045.9610093-CDS-C-tenellus_contig7596:3087..3325Choristocarpus tenellus KU2346CDSC-tenellus_contig7596 3088..3325 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790045.973534-UTR-C-tenellus_contig7596:3325..40121680790045.973534-UTR-C-tenellus_contig7596:3325..4012Choristocarpus tenellus KU2346UTRC-tenellus_contig7596 3326..4012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7596.2.1prot_C-tenellus_contig7596.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7596 2172..3325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7596.2.1

>prot_C-tenellus_contig7596.2.1 ID=prot_C-tenellus_contig7596.2.1|Name=mRNA_C-tenellus_contig7596.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=161bp
MKSFTRNLGKAVGRLTGVKGTRKDSETMLQTPPSGGSGAMPPPPPAIETE
LKEGNESVGVDTMPQSPMRKRQAIMNNPEEFESMDVDEDDAGLSTVPKSD
ETQVFLSQALREHFLFSQMRDSEVLACVGVMKPHDCLAGEVIVRQGDRGT
HFYVLETGFAE
back to top

mRNA from alignment at C-tenellus_contig7596:2172..4012-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7596.2.1 ID=mRNA_C-tenellus_contig7596.2.1|Name=mRNA_C-tenellus_contig7596.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1841bp|location=Sequence derived from alignment at C-tenellus_contig7596:2172..4012- (Choristocarpus tenellus KU2346)
TCTTCTCTCTGTAGGAATGAACTGCGAGGGATGAGTATGCCGAAAGACTG
CCTTTCAAAATCATCCCTCAGTATGTTTGTTATGGTCCGTATGGCATATT
GCACACGTTGTATATTGTACATTGCAGATGGGGAGAATTGATGCTTATGT
GCCCCACTGGACGGCTTGTCTTGTCACTGTTCGTTTTAATGAATGTCTTA
ATGAAATTTGTTGCCGGGGAGAGTAGTTGGTGGAGAATTTGTTCACCTTT
CCCAAGTTGAAGGTTCGCTTCTCTTTACCTCACAACGACGGGTAGGTTGC
AAACCCCAGTACCTTGTCGTGTGACCTTTGACATGATTTCTCATGAGTTT
GAGTCAACAGAGCTCTATCCTGGCGACGCTCGTGATGAGTGAATCTTTCT
GTAGCTTGTCGGAGTGGGGAGTTGGCTCTCTGATTGTAGGTCGTTCATGT
GGTGCATGAACGGTTTATCTTTCTCATGCTCAAATATTGCTCCGGTACGG
AGCATTCTAGCCGCAAATCACGGGAGAGAAAAGGCTGAGATAGCAATAAT
ATCTTACTTCACCTGAGAAAGTCCTCAGTTGGTCTCATCAACATACATTG
TCCTCCCATCTCGCGATCAATAGTGCTGTCTCATCCCTGTTCCTCCACTG
CACCATCCTCCCCCAACACCCAGCTCTCCACGACGAGATGAAAAGCTTCA
CACGGAACTTGGGTAAAGCTGTGGGTCGCCTTACTGGGGTAAAGGGCACT
CGTAAGGATAGTGAAACTATGTTGCAGACACCACCATCAGGCGGCTCTGG
TGCGATGCCACCCCCGCCTCCAGCAATCGAAACTGAGTTGAAGGAGGGAA
ATGAGTCTGTGGGGGTGGACACTATGCCGCAAAGTCCCATGCGCAAGCGC
CAGGCGATCATGAACAACCCTGAAGGTGTGCTTCCCCTTTTGTCTTTGAT
AAAAGCGTCCGTACGTCTGTGGTTAGCGCCCCTGTGGTTGGAGGACAACA
CTAAGTACTGTGTTGTTGGTCAACAGAAGAAAGTCGTTAGCTTGCTCCAC
ATGCCGCAGGAAAGTGGTGGTGGTGATGATCTTCATGCAGCGAATCCAAC
CTGTCACAAGCTCATTCAAATTCATCATGTATGCGATGCATGTGTTCTTT
TCACATGCGATACATCTATTCTTAGATTGTGCTCTTGAGGTATGGACTGC
CCCATCTCATAGTAGTATGTTGGTTTCTTGTTTTAGGCGGTTGTCCACCT
TATGGATGTTCATTAAGTGAGAATGAAACGGGAGGTCAGTGAAGTCCAGT
GAGCTAACTCCAGCTACCCTCTTCCTCCCCCCTCCCCAACAAACACACAC
ACCAAATCATACACCTCTGAGGCTCCTGACTCTTTAAGTTGTGACACGAC
TCTTGATCAGGAACATTCTTTGCAATCACCTCTTTCCAGTAAGTTGAAGT
GAATCTGACCCAAGAGACCATCAAACAAAACACCATGGTGAAAAGCCTCA
CAATCCCAAACTTCAACCCTCTAAAGACCCCACCACTTACAAGCAACTCT
ATTACACAGTGCTTCACCACATGTTGCCTACGACTCCCCTCCGCAGAGTT
CGAGAGCATGGATGTGGACGAGGATGATGCTGGCCTGTCTACTGTTCCAA
AGTCTGATGAGACCCAGGTGTTTCTATCGCAGGCCCTGCGGGAGCACTTC
CTATTCTCTCAGATGAGGGACAGCGAAGTGTTGGCATGTGTGGGGGTCAT
GAAACCTCATGACTGCTTAGCTGGAGAAGTCATTGTGCGCCAGGGGGATA
GGGGAACTCACTTCTATGTTCTCGAGACCGGTTTTGCTGAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7596:2172..4012-

>mRNA_C-tenellus_contig7596.2.1 ID=mRNA_C-tenellus_contig7596.2.1|Name=mRNA_C-tenellus_contig7596.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=483bp|location=Sequence derived from alignment at C-tenellus_contig7596:2172..4012- (Choristocarpus tenellus KU2346)
ATGAAAAGCTTCACACGGAACTTGGGTAAAGCTGTGGGTCGCCTTACTGG
GGTAAAGGGCACTCGTAAGGATAGTGAAACTATGTTGCAGACACCACCAT
CAGGCGGCTCTGGTGCGATGCCACCCCCGCCTCCAGCAATCGAAACTGAG
TTGAAGGAGGGAAATGAGTCTGTGGGGGTGGACACTATGCCGCAAAGTCC
CATGCGCAAGCGCCAGGCGATCATGAACAACCCTGAAGAGTTCGAGAGCA
TGGATGTGGACGAGGATGATGCTGGCCTGTCTACTGTTCCAAAGTCTGAT
GAGACCCAGGTGTTTCTATCGCAGGCCCTGCGGGAGCACTTCCTATTCTC
TCAGATGAGGGACAGCGAAGTGTTGGCATGTGTGGGGGTCATGAAACCTC
ATGACTGCTTAGCTGGAGAAGTCATTGTGCGCCAGGGGGATAGGGGAACT
CACTTCTATGTTCTCGAGACCGGTTTTGCTGAG
back to top