mRNA_C-tenellus_contig7552.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7552.2.1
Unique NamemRNA_C-tenellus_contig7552.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7552.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7552contigC-tenellus_contig7552:4907..6587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size183
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790044.0850377-CDS-C-tenellus_contig7552:4906..50231680790044.0850377-CDS-C-tenellus_contig7552:4906..5023Choristocarpus tenellus KU2346CDSC-tenellus_contig7552 4907..5023 +
1680790044.096731-CDS-C-tenellus_contig7552:6521..65871680790044.096731-CDS-C-tenellus_contig7552:6521..6587Choristocarpus tenellus KU2346CDSC-tenellus_contig7552 6522..6587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7552.2.1prot_C-tenellus_contig7552.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7552 4907..6587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7552.2.1

>prot_C-tenellus_contig7552.2.1 ID=prot_C-tenellus_contig7552.2.1|Name=mRNA_C-tenellus_contig7552.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=61bp
MLPSSVGGRYAPYRNGHSDSLSVSWSLPDYLRRIVDYHQMDLESTADQMV
TLLTFNQKGV*
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mRNA from alignment at C-tenellus_contig7552:4907..6587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7552.2.1 ID=mRNA_C-tenellus_contig7552.2.1|Name=mRNA_C-tenellus_contig7552.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1681bp|location=Sequence derived from alignment at C-tenellus_contig7552:4907..6587+ (Choristocarpus tenellus KU2346)
ATGTTGCCCAGCAGCGTAGGCGGGCGATACGCCCCATACCGAAACGGACA
CTCCGATTCTCTCTCTGTATCATGGAGCCTACCTGATTATTTGAGGCGTA
TAGTGGACTACCACCAGGTAAAAGGAATTTTGTTTGAAGGAATTCCATTT
TATCTCTCCGTCTATTCTCCACATTCCAAGCCCGTTTGCATGAGGTTGTT
CGTATATGTGTGTAAGTGTGCCATTGCAAGTTTTGTTCCCTACACGTGGC
CTTCAAGAGTAGTGACAGGAAATAGTCCTGTAATGGTTGCTGGTATCTCC
ACCATGTGTTGAATCTTTGCTACCTCCTACGCCTCATAACCCCTTACCCT
TTACCCTCACAAGACAGGGTGTAATGTGTTTCATAATCTCTACCAATTTG
TACTCTTGACCTCAACCAAACACACAGACCTGGATTGACTGCAGCTAATT
TCCTTTTTTGGTTCATACGTGGCCAACCTTCTTCCCACCACAAGCTCTAC
TCCCATTACCTTCACCTACTCTCTTTCATTGAAATCATTCAACGGGTTCC
AGTCACTGGTTACTACATTCTTTGAAGTATATGACCCCCTTGAGTACCAT
TTGCCATCTCTTTGGTGTCAAGATCAGAGAAATCTACGCACAACTTGATG
TTGAATCCAAGTACATATCTTTCTTTCTCTGATCGTCTTCCTGCCACATA
GCTGCTGTAGTTCAACATCACGGTATAAAGCTCCTTTTACATTTTACATT
CAAAAACATGATCAAAATAATTAACCCCATGTAGTTACATGGGATCCCTT
GCTTCTTACCCCTACCAACTACTCCAAGGTATCAATGTCCGCCTATCCTG
TAGAGCCATTTTCCACTACTTTCTTTCCCATTGACTCCTGCCTTCCTCTC
TCATCTTCCACCCCACCCCACTCCCCTCTGTGGAGTGGATTGGCATTTGA
TAAGTCCGTCCCCTTGATCCATCGGTAGGAGTGTTCCACATCACTCTCAT
TAGTGTCCCCTGCGATGATCTACTCTCATTTATGAACCTAAGGGCCAACC
ACAGAAGGTACCCAAATCCCCCCTCTCTTTTTTTTGGGACGAAGTTGTTG
TGATGTCAAATCACTTCGCAGGTAAGTAAGTGCATTCATTGGGTGAGGTG
TTTCCAAGAGAAAGTGTCGTCGTCTTCTGCACTCGATGAGTGATGTATAT
ACTGCACAGTGCGTGTTAGGTGTGAATACATCTCTCTCTCTCTCTCTCTC
TCTCTCTTATCTCTCTCTCTTATCTCTCTCTCTCTCTCTCTTTCATTGAG
CAGTGCAACGTCGCTCTCCTTAGTCTCAAAATCTGGAGTGGCTCGTTCAA
GATGTTCCTCTCTCTCCGTACCCTCAATATTTCTCTGTGTGGCGTACATA
AACGTGTAAAAGTTTTGAGATGAACCTCTGACAGAAGAAGGCAATAGTTT
CACCAACAATACCTGCGATCAACACAATTCTCTCCCCTCCTCTTTTTTTA
CATTTTGAGAAAAGACCCTCCCTCCCCCATCACCTGCGATCGGTACGCGT
TCGTAACCTGCCTGTCGTCGCCTTTCGCCTGTTGGCAATACATAACGCAC
CTGCTCTGCTGGAAGATGGACCTGGAGTCTACAGCAGACCAGATGGTAAC
CCTCCTTACCTTCAACCAGAAGGGAGTGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7552:4907..6587+

>mRNA_C-tenellus_contig7552.2.1 ID=mRNA_C-tenellus_contig7552.2.1|Name=mRNA_C-tenellus_contig7552.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=183bp|location=Sequence derived from alignment at C-tenellus_contig7552:4907..6587+ (Choristocarpus tenellus KU2346)
ATGTTGCCCAGCAGCGTAGGCGGGCGATACGCCCCATACCGAAACGGACA
CTCCGATTCTCTCTCTGTATCATGGAGCCTACCTGATTATTTGAGGCGTA
TAGTGGACTACCACCAGATGGACCTGGAGTCTACAGCAGACCAGATGGTA
ACCCTCCTTACCTTCAACCAGAAGGGAGTGTGA
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