mRNA_C-tenellus_contig7540.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7540.1.1
Unique NamemRNA_C-tenellus_contig7540.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7540.1.1 vs. uniprot
Match: A0A8C9VJW7_SCLFO (Anoctamin n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9VJW7_SCLFO)

HSP 1 Score: 52.0 bits (123), Expect = 2.440e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 LAWISNYAEIRVDAVKVLLEHRRPYPLGRQDIGTYQMVFTAIAIVSVGTNA 153
            LA+++N  EIRVDA K+  + RR  P   QDIG +Q +  A+AI++V TNA
Sbjct:  606 LAFLNNVVEIRVDAWKITTQFRRMVPEKAQDIGAWQPILQAVAILAVATNA 656
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BLAST of mRNA_C-tenellus_contig7540.1.1 vs. uniprot
Match: A0A8C9U444_SCLFO (Anoctamin n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9U444_SCLFO)

HSP 1 Score: 52.0 bits (123), Expect = 2.440e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 LAWISNYAEIRVDAVKVLLEHRRPYPLGRQDIGTYQMVFTAIAIVSVGTNA 153
            LA+++N  EIRVDA K+  + RR  P   QDIG +Q +  A+AI++V TNA
Sbjct:  570 LAFLNNVVEIRVDAWKITTQFRRMVPEKAQDIGAWQPILQAVAILAVATNA 620
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BLAST of mRNA_C-tenellus_contig7540.1.1 vs. uniprot
Match: A0A0P7WBS1_SCLFO (Anoctamin n=10 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7WBS1_SCLFO)

HSP 1 Score: 52.0 bits (123), Expect = 2.450e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 LAWISNYAEIRVDAVKVLLEHRRPYPLGRQDIGTYQMVFTAIAIVSVGTNA 153
            LA+++N  EIRVDA K+  + RR  P   QDIG +Q +  A+AI++V TNA
Sbjct:  791 LAFLNNVVEIRVDAWKITTQFRRMVPEKAQDIGAWQPILQAVAILAVATNA 841
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BLAST of mRNA_C-tenellus_contig7540.1.1 vs. uniprot
Match: A0A197JIP8_9FUNG (DUF590-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JIP8_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 6.270e-6
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    4 AWISNYAEIRVDAVKVLLEHRRPYPLGRQDIGTYQMVFTAIAIVSVGTNAGL 159
            A ++N  EIRVDA KVL +H+RP   G QDIG++  +   +  +SV TNA L
Sbjct:  874 ALLNNILEIRVDAYKVLTQHKRPIAQGAQDIGSWGTILMLLTHISVFTNACL 925
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7540.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A8C9VJW7_SCLFO2.440e-649.02Anoctamin n=1 Tax=Scleropages formosus TaxID=11354... [more]
A0A8C9U444_SCLFO2.440e-649.02Anoctamin n=1 Tax=Scleropages formosus TaxID=11354... [more]
A0A0P7WBS1_SCLFO2.450e-649.02Anoctamin n=10 Tax=Scleropages formosus TaxID=1135... [more]
A0A197JIP8_9FUNG6.270e-648.08DUF590-domain-containing protein n=1 Tax=Linnemann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7540contigC-tenellus_contig7540:5774..5932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQE1
PFAMsAnoct_dimer,Anoctamin,ERK-JNK_inhib
Model size159
Max annot lvl2759|Eukaryota
KEGG koko:K19327,ko:K19480,ko:K19497,ko:K19501
KEGG TC1.A.17.1,1.A.17.1.2,1.A.17.1.21,1.A.17.1.3
KEGG Pathwayko04740,map04740
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.24e-08
EggNOG OGsKOG2514@1|root,KOG2514@2759|Eukaryota
Descriptionintracellular chloride channel activity
Cds size159
COG categoryU
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790043.4708598-CDS-C-tenellus_contig7540:5773..59321680790043.4708598-CDS-C-tenellus_contig7540:5773..5932Choristocarpus tenellus KU2346CDSC-tenellus_contig7540 5774..5932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7540.1.1prot_C-tenellus_contig7540.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7540 5774..5932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7540.1.1

>prot_C-tenellus_contig7540.1.1 ID=prot_C-tenellus_contig7540.1.1|Name=mRNA_C-tenellus_contig7540.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=53bp
LAWISNYAEIRVDAVKVLLEHRRPYPLGRQDIGTYQMVFTAIAIVSVGTN
AGL
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mRNA from alignment at C-tenellus_contig7540:5774..5932-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7540.1.1 ID=mRNA_C-tenellus_contig7540.1.1|Name=mRNA_C-tenellus_contig7540.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=159bp|location=Sequence derived from alignment at C-tenellus_contig7540:5774..5932- (Choristocarpus tenellus KU2346)
CTGGCATGGATATCCAACTATGCAGAGATTAGGGTGGATGCAGTGAAGGT
GTTGCTAGAGCACAGACGGCCTTATCCCCTAGGAAGACAGGACATTGGGA
CGTATCAGATGGTGTTTACTGCCATTGCCATCGTGTCTGTTGGTACCAAT
GCTGGCCTG
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Coding sequence (CDS) from alignment at C-tenellus_contig7540:5774..5932-

>mRNA_C-tenellus_contig7540.1.1 ID=mRNA_C-tenellus_contig7540.1.1|Name=mRNA_C-tenellus_contig7540.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=159bp|location=Sequence derived from alignment at C-tenellus_contig7540:5774..5932- (Choristocarpus tenellus KU2346)
CTGGCATGGATATCCAACTATGCAGAGATTAGGGTGGATGCAGTGAAGGT
GTTGCTAGAGCACAGACGGCCTTATCCCCTAGGAAGACAGGACATTGGGA
CGTATCAGATGGTGTTTACTGCCATTGCCATCGTGTCTGTTGGTACCAAT
GCTGGCCTG
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