mRNA_C-tenellus_contig752.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig752.3.1
Unique NamemRNA_C-tenellus_contig752.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig752.3.1 vs. uniprot
Match: A0A6H5JR91_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR91_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 9.150e-45
Identity = 167/481 (34.72%), Postives = 222/481 (46.15%), Query Frame = 1 
Query:    1 QLQAQEALRIVVYLMSHGADAYIVNDIGEDPLSLAARCTAEFPRARKLLVSILDSSRYKADKGALYIEPGNTCLPSLEEEGGVGG----------------------LAPAPPTTISVRGVVYSPSRQRCRQGTEQVRQQNRPLRNLSSAQYSQ----------KRSIVGWRAPNLLNSPSVAPLPVGDHENILGGPQHRLATALTSKGNSLERKCHRLPDLLGTQNTGGQVERGVRKV--PISVFFKEYRLGRNSSVPTKCLGRQMVKSFRGR-RPKSCP------EQLSPEGGGGRSQSERGRLGR--------------------LGAKKGLHPKSSPLNQSIKQRTQAKTSATKSESQR------NQKHEQNVPSVSDMEARAMISSWIRENAKLVSI--PKM------ESFTEGSPHVSFGSRAEIYQALRTIKGDGWGELIPAQNLRTALCTVGQPLETSEMDGLLESGDPAKTG 1218
            ++  QEALR+VV+LMSHGADA  VN +GE PL L +R T  FP+ R LL+ ILDSS+Y+   G ++I P N  LPS++EE  V G                               + RGV +SPSR R R+  ++       L  +SSA  S           + S  G R    + +P+   LP GDHE  LGG +HRLA      G    R  H      G    GG   R  R+      V FK+YR+GR+S+V     G   +K +RG  RP SCP      E   P   G R  S     G+                         G            +QR   + SA + +S+R       ++ E+ + S+ D EAR  I  W+RE+A   S   P M      E   E S +V+ G R+++Y+AL+ IKGDG GELI A+ LR  LC VGQPL  +EMD LL+  DP  TG
Sbjct:  258 KIHVQEALRVVVFLMSHGADARAVNHLGETPLDLGSRLTGGFPKFRSLLLPILDSSKYQIAGGTIFIVPAN--LPSVKEE--VTGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTARGVTFSPSR-RNRRAKKRYEIAKSRLPYVSSASLSSAAPSFGEGRCRSSSGGGRGG--VTTPA---LPRGDHETALGGARHRLAAG---HGARCSRNDHDGAHGRG----GGGAARECRQAGGASGVHFKDYRMGRSSAVLVSSSGGGGLKRWRGAARPASCPVPGGIDEGRGPGTPGSRVASSATGAGQRXXXXXXXXXXXXXXXXXXXXXXXXGCRGDGGVRVVGTRQRHGGRHSAREEQSERPGARRRREEGERALGSMPDSEARRQIWEWLRESAGTASAVPPAMAHGSGGEILVETSSYVATGRRSDVYRALQAIKGDGRGELISAEKLRAVLCRVGQPLLPNEMDELLQETDPTGTG 721
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BLAST of mRNA_C-tenellus_contig752.3.1 vs. uniprot
Match: D8LM05_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM05_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 6.580e-25
Identity = 102/288 (35.42%), Postives = 134/288 (46.53%), Query Frame = 1 
Query:    1 QLQAQEALRIVVYLMSHGADAYIVNDIGEDPLSLAARCTAEFPRARKLLVSILDSSRYKADKGALYIEPGNTCLPSLEEEGG----------------VGGLAPAPPT------------------TISVRGVVYSPSRQRCRQGTEQVRQQNRPLRNLSSAQYSQKRSIVG---WRAPNLLNSPSVAP--LPVGDHENILGGPQHRLATALTSK--GNSLERKCHRLPDLLGTQNTGGQVERGVRKVPISVFFKEYRLGRNSSVPTKCLGRQMVKSFRGR-RPKSCP 738
            ++ AQEALR+VV+LMSHGADA  VN +GE PL L  R T+ FP++R LL+SILDSS+Y+   G ++I P N  LPS++EE                    GL  APP                   T + RGV +SPSR R R+  ++       L  +SSA  S      G    R+ +      VA   LP GDHE  LGG +HRLA    ++   N  +   H                         V FK+YR+GR+S+V         +K  RG  RP SCP
Sbjct:  186 KIHAQEALRVVVFLMSHGADARAVNHLGETPLDLGFRLTSGFPKSRSLLLSILDSSKYQIAGGTIFIVPAN--LPSVKEEATRXXXXXXXXXXXXVARTTGLRGAPPVATAGTAAVXXXXXTTAPKTTTARGVTFSPSR-RNRRAKKRYEIAKSRLPYVSSASLSSAAPSFGEGRCRSSSGGGRGGVATPALPRGDHETALGGARHRLAAGHGARCSRNDHDGGAHGXXXXXXXXXXXXXXXXXXXXXXGGVHFKDYRMGRSSAVLVSGXXXXGLKRGRGTTRPASCP 470
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BLAST of mRNA_C-tenellus_contig752.3.1 vs. uniprot
Match: A0A835YHJ9_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHJ9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.110e-10
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:   10 AQEALRIVVYLMSHGADAYIVNDIGEDPLSLAARCTAEFPRARKLLVSILDSSRYKADKGALYIEPGNTCL 222
            A+ AL++VVYLM+ GADA + +  G   L LA R TA +PRA++LLV +LDSS+Y+ +  ALYI P    L
Sbjct:  422 AEGALQLVVYLMARGADARVADGAGRTALDLATRGTAGYPRAQRLLVGVLDSSKYQVEGDALYIVPDEAAL 492
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig752.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JR91_9PHAE9.150e-4534.72PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LM05_ECTSI6.580e-2535.42Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A835YHJ9_9STRA4.110e-1050.70PH domain-containing protein n=1 Tax=Tribonema min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig752contigC-tenellus_contig752:10681..12792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1284
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-14_002370.1
Cds size1284
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790042.189776-CDS-C-tenellus_contig752:10680..110321680790042.189776-CDS-C-tenellus_contig752:10680..11032Choristocarpus tenellus KU2346CDSC-tenellus_contig752 10681..11032 +
1680790042.2021558-CDS-C-tenellus_contig752:11347..115911680790042.2021558-CDS-C-tenellus_contig752:11347..11591Choristocarpus tenellus KU2346CDSC-tenellus_contig752 11348..11591 +
1680790042.2151275-CDS-C-tenellus_contig752:11669..122901680790042.2151275-CDS-C-tenellus_contig752:11669..12290Choristocarpus tenellus KU2346CDSC-tenellus_contig752 11670..12290 +
1680790042.2242506-CDS-C-tenellus_contig752:12725..127921680790042.2242506-CDS-C-tenellus_contig752:12725..12792Choristocarpus tenellus KU2346CDSC-tenellus_contig752 12726..12792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig752.3.1prot_C-tenellus_contig752.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig752 10681..12792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig752.3.1

>prot_C-tenellus_contig752.3.1 ID=prot_C-tenellus_contig752.3.1|Name=mRNA_C-tenellus_contig752.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=428bp
QLQAQEALRIVVYLMSHGADAYIVNDIGEDPLSLAARCTAEFPRARKLLV
SILDSSRYKADKGALYIEPGNTCLPSLEEEGGVGGLAPAPPTTISVRGVV
YSPSRQRCRQGTEQVRQQNRPLRNLSSAQYSQKRSIVGWRAPNLLNSPSV
APLPVGDHENILGGPQHRLATALTSKGNSLERKCHRLPDLLGTQNTGGQV
ERGVRKVPISVFFKEYRLGRNSSVPTKCLGRQMVKSFRGRRPKSCPEQLS
PEGGGGRSQSERGRLGRLGAKKGLHPKSSPLNQSIKQRTQAKTSATKSES
QRNQKHEQNVPSVSDMEARAMISSWIRENAKLVSIPKMESFTEGSPHVSF
GSRAEIYQALRTIKGDGWGELIPAQNLRTALCTVGQPLETSEMDGLLESG
DPAKTGYISCSKVSDILSGERLRPLKDG
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mRNA from alignment at C-tenellus_contig752:10681..12792+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig752.3.1 ID=mRNA_C-tenellus_contig752.3.1|Name=mRNA_C-tenellus_contig752.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2112bp|location=Sequence derived from alignment at C-tenellus_contig752:10681..12792+ (Choristocarpus tenellus KU2346)
CAGCTTCAAGCTCAGGAGGCCTTGCGTATTGTCGTCTATCTTATGTCTCA
TGGTGCTGACGCCTACATTGTCAACGATATCGGTGAAGACCCATTGAGCT
TGGCTGCCCGGTGTACAGCTGAATTTCCAAGGGCACGCAAGCTCCTGGTC
TCAATCCTGGATTCCAGCAGGTACAAGGCAGACAAGGGCGCATTATATAT
TGAACCAGGAAATACTTGCCTTCCCAGTTTGGAGGAAGAGGGAGGAGTTG
GGGGTCTTGCACCTGCCCCCCCGACTACAATCAGTGTCAGGGGTGTCGTG
TATTCACCTTCAAGACAGAGGTGCAGGCAAGGCACAGAACAAGTAAGACA
ACGTGGCAGGATCATTTTCGTAGAAGGGGAGAAGAATACCCAGAAAGTGC
ATATCAAGATGAGCTTTGTCCCATGCTCATTCTGGGGTAATATTACCTGC
CTTGTCAATGTCTTTCTCCATTCTCACATTTGAAGCTTTTATGCTCCCTG
ATGTTGTGAACTGTAGTAGGACGTTTCCTGTGAGAACGAGTAGGCAGTGG
TTAATGCTGCCAGTTTGCGATCTATCCCCACCTGTTCAAGTTCCTTATGC
AACTGTGGCATGTCCTTGTGGTTGACTTTCCTGTTGCACAAGAGAGGACC
TGGAGACTGTGAAGCAGAAAATAGACCTCTGAGGAACCTGTCCTCTGCCC
AGTACTCGCAGAAAAGGAGCATTGTGGGATGGCGTGCTCCTAACCTCCTC
AATAGCCCCAGTGTGGCCCCACTACCTGTGGGAGACCACGAGAACATTCT
GGGGGGCCCTCAGCACCGACTTGCTACTGCATTAACCTCAAAAGGCAATT
CTTTGGAGAGGAAATGCCACAGGCTGCCTGACCTCCTTGGGACACAGAAT
ACAGGTGGGCAGTGCGACAAGAAAAGCCATCGTTGTCTAGGTGGTAGGCT
ACCTAGTCATGAAGGCAACTACAGGAACGGAGTATCAAGAGTAGAGAGGG
GTGTAAGGAAGGTTCCAATTTCGGTGTTTTTCAAGGAATACAGACTAGGG
AGGAACAGCTCTGTGCCAACCAAATGTTTGGGAAGGCAAATGGTGAAATC
ATTCCGTGGAAGAAGGCCTAAGAGCTGCCCTGAGCAACTCAGTCCGGAGG
GTGGTGGAGGTAGAAGTCAAAGTGAGAGGGGAAGATTGGGGAGGCTGGGA
GCAAAGAAAGGCCTTCACCCCAAAAGCTCACCGCTCAATCAGTCCATTAA
GCAGAGAACCCAAGCAAAGACATCTGCTACAAAATCAGAGTCACAACGAA
ATCAGAAGCACGAACAAAATGTCCCTAGTGTATCAGATATGGAGGCGCGA
GCAATGATCTCGTCGTGGATTCGTGAAAATGCCAAGTTGGTGTCTATTCC
GAAGATGGAGAGTTTCACTGAGGGTAGCCCACATGTTTCCTTTGGGAGTA
GGGCCGAGATATATCAAGCCTTGCGTACCATCAAGGGTGATGGGTGGGGG
GAATTGATACCTGCACAAAATCTTCGGACTGCACTGTGTACTGTGGGACA
GCCATTGGAGACAAGTGAAATGGATGGCCTCTTGGAGAGTGGAGATCCAG
CGAAAACAGGGTGAGAGCCAAAGAGGGGGGTGCCATTGATCACAAGGGGT
CTTTGTGATTGACTTCAGGATTTGATGTTGTATGTGGAGGTCAAGTATTA
GGGAAAAGACAATTTCTTTCATCCAGACACATAACCTATATGCACAGACT
CCTCATGGGGACTGTCTGCACCTGACCCATGGAAATTCGGTGTCAGGTGC
AACAATTTAATATCCTCCTCCCGTAAGATAGAAATGGCCACCATACACCC
CCCTCTAGGATACTGTGGCTCTGAGCAGGTTGCCCGAGTTATCATCTTCC
TTACCTTGAAATTGTGTGTGCTACCAGATGCATGCAGGCTCAGGGGTGCA
CATACACACATGTACACATGGACACGCACTCACACATGCACACACATACA
CAGATAGAGGCCTATGCTGATGCTCACACTCACGTTGGTGTTCAGGTACA
TCTCGTGCTCGAAGGTCTCTGACATCCTGTCGGGTGAACGATTAAGGCCA
CTGAAGGATGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig752:10681..12792+

>mRNA_C-tenellus_contig752.3.1 ID=mRNA_C-tenellus_contig752.3.1|Name=mRNA_C-tenellus_contig752.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1284bp|location=Sequence derived from alignment at C-tenellus_contig752:10681..12792+ (Choristocarpus tenellus KU2346)
CAGCTTCAAGCTCAGGAGGCCTTGCGTATTGTCGTCTATCTTATGTCTCA
TGGTGCTGACGCCTACATTGTCAACGATATCGGTGAAGACCCATTGAGCT
TGGCTGCCCGGTGTACAGCTGAATTTCCAAGGGCACGCAAGCTCCTGGTC
TCAATCCTGGATTCCAGCAGGTACAAGGCAGACAAGGGCGCATTATATAT
TGAACCAGGAAATACTTGCCTTCCCAGTTTGGAGGAAGAGGGAGGAGTTG
GGGGTCTTGCACCTGCCCCCCCGACTACAATCAGTGTCAGGGGTGTCGTG
TATTCACCTTCAAGACAGAGGTGCAGGCAAGGCACAGAACAAGTAAGACA
ACAAAATAGACCTCTGAGGAACCTGTCCTCTGCCCAGTACTCGCAGAAAA
GGAGCATTGTGGGATGGCGTGCTCCTAACCTCCTCAATAGCCCCAGTGTG
GCCCCACTACCTGTGGGAGACCACGAGAACATTCTGGGGGGCCCTCAGCA
CCGACTTGCTACTGCATTAACCTCAAAAGGCAATTCTTTGGAGAGGAAAT
GCCACAGGCTGCCTGACCTCCTTGGGACACAGAATACAGGTGGGCAAGTA
GAGAGGGGTGTAAGGAAGGTTCCAATTTCGGTGTTTTTCAAGGAATACAG
ACTAGGGAGGAACAGCTCTGTGCCAACCAAATGTTTGGGAAGGCAAATGG
TGAAATCATTCCGTGGAAGAAGGCCTAAGAGCTGCCCTGAGCAACTCAGT
CCGGAGGGTGGTGGAGGTAGAAGTCAAAGTGAGAGGGGAAGATTGGGGAG
GCTGGGAGCAAAGAAAGGCCTTCACCCCAAAAGCTCACCGCTCAATCAGT
CCATTAAGCAGAGAACCCAAGCAAAGACATCTGCTACAAAATCAGAGTCA
CAACGAAATCAGAAGCACGAACAAAATGTCCCTAGTGTATCAGATATGGA
GGCGCGAGCAATGATCTCGTCGTGGATTCGTGAAAATGCCAAGTTGGTGT
CTATTCCGAAGATGGAGAGTTTCACTGAGGGTAGCCCACATGTTTCCTTT
GGGAGTAGGGCCGAGATATATCAAGCCTTGCGTACCATCAAGGGTGATGG
GTGGGGGGAATTGATACCTGCACAAAATCTTCGGACTGCACTGTGTACTG
TGGGACAGCCATTGGAGACAAGTGAAATGGATGGCCTCTTGGAGAGTGGA
GATCCAGCGAAAACAGGGTACATCTCGTGCTCGAAGGTCTCTGACATCCT
GTCGGGTGAACGATTAAGGCCACTGAAGGATGGT
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