mRNA_C-tenellus_contig7508.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7508.2.1
Unique NamemRNA_C-tenellus_contig7508.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7508.2.1 vs. uniprot
Match: A0A836CD41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD41_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.570e-30
Identity = 68/127 (53.54%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:    1 MVDWEGEGKVMPDFGKLERVQGDSDLPVWAARQKKVFTNWINNKASVRREGCAMELFSDLQDGV-------------------------VLFSLLEVLSKQSLAVLGKVKPERNKIKKIANMNIVWK 306
            MVD+EGEGK MPDF  L++++ +S+LP WA RQ+KVFTNWINNK ++R    A  LF    DGV                         VL++LLEVLS+QSLAVLGK++PERN+IKK+ANMNIVWK
Sbjct:    1 MVDYEGEGKQMPDFNALDKLK-NSELPPWAVRQQKVFTNWINNKVAIRLLK-ADNLFRTPTDGVAVRLLKXXXXXXXXXXXXXXXXXXXVLYNLLEVLSRQSLAVLGKIRPERNRIKKVANMNIVWK 125
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BLAST of mRNA_C-tenellus_contig7508.2.1 vs. uniprot
Match: F0XZG2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZG2_AURAN)

HSP 1 Score: 63.9 bits (154), Expect = 9.480e-10
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:   79 PVWAARQKKVFTNWINNKASVRREGCAMELFSDLQDGVVLFSLLEVLSKQSLAVLGKVKPE------RNKIKKIANMNIVWK 306
            P W  RQ+K+FTN++N K   R       +F DL+DG +L++LLE LS QSLA +GK+K +        +I  ++N++IV++
Sbjct:   14 PKWLKRQRKLFTNFVNAKLMDRDISPVTNIFEDLKDGRILYALLEELSGQSLAPIGKIKKKAPLKKAETRIDHVSNLSIVFR 95
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BLAST of mRNA_C-tenellus_contig7508.2.1 vs. uniprot
Match: A0A7S3JRK8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRK8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.840e-9
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   79 PVWAARQKKVFTNWINNKASVRREGCAM-ELFSDLQDGVVLFSLLEVLSKQSLAVLGKVKP-----ERNKIKKIANMNIVWK 306
            P W  RQ+++FTN+ N K + R +   M ++  D++DG VL++LLEVLS QSLA LGK+K      E + I K+AN++I ++
Sbjct:   23 PKWLRRQRRLFTNFCNAKLADRDDIPPMTDILEDIKDGRVLYALLEVLSGQSLAPLGKIKKPKAGKELSHIDKVANLSISFR 104
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BLAST of mRNA_C-tenellus_contig7508.2.1 vs. uniprot
Match: A0A139A334_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A334_GONPJ)

HSP 1 Score: 55.1 bits (131), Expect = 1.410e-6
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:   85 WAARQKKVFTNWINNKASVRREGCAMELFSDLQDGVVLFSLLEVLSKQSLAVLGKVKPERNKIKKIANMN 294
            W   QKK FTNW+NNK SV+     M+L+++L  G  L  LLE++  ++L    +    R  I+K+ NMN
Sbjct:   45 WETIQKKTFTNWVNNKLSVKHIEPIMDLYTELASGEKLIQLLEIIGDENLGRYNRNPKMR--IQKVENMN 112
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BLAST of mRNA_C-tenellus_contig7508.2.1 vs. uniprot
Match: F4PGS2_CAVFA (Interaptin n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PGS2_CAVFA)

HSP 1 Score: 52.4 bits (124), Expect = 1.290e-5
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:   85 WAARQKKVFTNWINNKASVRREGCAMELFSDLQDGVVLFSLLEVLSKQSLAVLGKVKPERNKIKKIANMNIVWK 306
            W   QKKVFTNW N    +R E    ++  DL+DG++L +LLEVLS  + ++L K    +N++ K+ N+N   K
Sbjct:   30 WVLAQKKVFTNWCNIYLGLR-ELSIKDVQLDLEDGILLANLLEVLSGSN-SILSKCTKLKNRLHKVNNINFSLK 101
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BLAST of mRNA_C-tenellus_contig7508.2.1 vs. uniprot
Match: ACTNB_DICDI (Interaptin n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=ACTNB_DICDI)

HSP 1 Score: 51.2 bits (121), Expect = 3.330e-5
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   85 WAARQKKVFTNWIN---NKASVRREGCAMELFSDLQDGVVLFSLLEVLSKQSLAVLGKVKPERNKIKKIANMNIVWK 306
            W   QKKVFTNW N   N+ S + E    +L +DL DG++L SLLE+LS +++ +L K K  + ++  I N+N   K
Sbjct:   20 WVIAQKKVFTNWCNIFLNQRSQKIE----DLETDLYDGILLGSLLEILSGKNV-ILSKCKQLKTRLHYINNLNFSLK 91
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BLAST of mRNA_C-tenellus_contig7508.2.1 vs. uniprot
Match: K1RM01_CRAGI (Dystrophin n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1RM01_CRAGI)

HSP 1 Score: 51.2 bits (121), Expect = 3.350e-5
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   97 QKKVFTNWINNKASVRREGCAMELFSDLQDGVVLFSLLEVLSKQSLAVLGKVKPERNKIKKIANMNIV 300
            QK+ FT WIN++ S        +LFSDL+DG +L SLLEVLS +++   GK K  R ++  I N+N V
Sbjct:   16 QKRSFTKWINSQLSKAGHSLVTDLFSDLKDGTLLLSLLEVLSGKAM---GKEKG-RMRVHHINNVNRV 79
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BLAST of mRNA_C-tenellus_contig7508.2.1 vs. uniprot
Match: UPI00148A5B67 (dystrophin isoform X1 n=3 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A5B67)

HSP 1 Score: 51.2 bits (121), Expect = 3.390e-5
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   97 QKKVFTNWINNKASVRREGCAMELFSDLQDGVVLFSLLEVLSKQSLAVLGKVKPERNKIKKIANMNIV 300
            QK+ FT WIN++ S        +LFSDL+DG +L SLLEVLS +++   GK K  R ++  I N+N V
Sbjct:   28 QKRSFTKWINSQLSKAGHSLVTDLFSDLKDGTLLLSLLEVLSGKAM---GKEKG-RMRVHHINNVNRV 91
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BLAST of mRNA_C-tenellus_contig7508.2.1 vs. uniprot
Match: UPI001E1D89BF (LOW QUALITY PROTEIN: nesprin-1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D89BF)

HSP 1 Score: 50.8 bits (120), Expect = 4.670e-5
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   97 QKKVFTNWINNKASVRREGCAME-LFSDLQDGVVLFSLLEVLSKQSLAVLGKVKPERNKIKKI 282
            QKK FTNW+N+    +     +E LF D++DGVVL SLLEVLS + L +      ER K+K++
Sbjct:   62 QKKTFTNWMNSYLKQKSPPLKVENLFEDIKDGVVLLSLLEVLSGEKLPM------ERGKLKRV 118
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7508.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A836CD41_9STRA4.570e-3053.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0XZG2_AURAN9.480e-1040.24Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3JRK8_9STRA3.840e-943.90Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A139A334_GONPJ1.410e-640.00Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
F4PGS2_CAVFA1.290e-540.54Interaptin n=1 Tax=Cavenderia fasciculata (strain ... [more]
ACTNB_DICDI3.330e-541.56Interaptin n=1 Tax=Dictyostelium discoideum TaxID=... [more]
K1RM01_CRAGI3.350e-545.59Dystrophin n=1 Tax=Crassostrea gigas TaxID=29159 R... [more]
UPI00148A5B673.390e-545.59dystrophin isoform X1 n=3 Tax=Crassostrea gigas Ta... [more]
UPI001E1D89BF4.670e-546.03LOW QUALITY PROTEIN: nesprin-1-like n=1 Tax=Mercen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7508contigC-tenellus_contig7508:4811..6655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009033966.1
PFAMsCH,Cortex-I_coil,NT-C2,PH
Model size309
Max annot lvl2759|Eukaryota
KEGG koko:K05699,ko:K18620
KEGG Pathwayko04510,ko04520,ko04530,ko04670,ko04810,ko05146,ko05203,ko05322,map04510,map04520,map04530,map04670,map04810,map05146,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000278,GO:0000281,GO:0000902,GO:0000904,GO:0000910,GO:0000916,GO:0001932,GO:0001934,GO:0002064,GO:0003382,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005815,GO:0005819,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007154,GO:0007155,GO:0007275,GO:0008092,GO:0008104,GO:0008150,GO:0008289,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009847,GO:0009888,GO:0009893,GO:0009987,GO:0009991,GO:0010324,GO:0010468,GO:0010562,GO:0010604,GO:0010628,GO:0010638,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016043,GO:0019220,GO:0019222,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0022610,GO:0030029,GO:0030036,GO:0030154,GO:0030587,GO:0030855,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031150,GO:0031152,GO:0031154,GO:0031252,GO:0031254,GO:0031255,GO:0031288,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0031965,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0031985,GO:0032153,GO:0032154,GO:0032155,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032506,GO:0032580,GO:0032956,GO:0032970,GO:0032989,GO:0033036,GO:0033043,GO:0033554,GO:0034613,GO:0035091,GO:0036089,GO:0036213,GO:0036360,GO:0040011,GO:0042175,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042594,GO:0042802,GO:0042803,GO:0043087,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043327,GO:0043519,GO:0043520,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0044877,GO:0045178,GO:0045180,GO:0045184,GO:0045937,GO:0046983,GO:0048468,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051233,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051336,GO:0051493,GO:0051495,GO:0051606,GO:0051639,GO:0051641,GO:0051703,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0061024,GO:0061572,GO:0061640,GO:0065007,GO:0065009,GO:0070727,GO:0070938,GO:0071496,GO:0071840,GO:0071944,GO:0072657,GO:0072686,GO:0072741,GO:0080090,GO:0090702,GO:0097435,GO:0097574,GO:0098588,GO:0098590,GO:0098609,GO:0098630,GO:0098743,GO:0098791,GO:0098827,GO:0099024,GO:0099120,GO:0099568,GO:0099738,GO:1901981,GO:1902936,GO:1903047,GO:1905345,GO:1990023,GO:1990778
Exons2
Evalue1.55e-10
EggNOG OGsCOG5069@1|root,KOG0035@2759|Eukaryota
Descriptionactin binding
Cds size309
COG categoryZ
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790040.3412333-CDS-C-tenellus_contig7508:4810..49701680790040.3412333-CDS-C-tenellus_contig7508:4810..4970Choristocarpus tenellus KU2346CDSC-tenellus_contig7508 4811..4970 +
1680790040.3582118-CDS-C-tenellus_contig7508:6506..66551680790040.3582118-CDS-C-tenellus_contig7508:6506..6655Choristocarpus tenellus KU2346CDSC-tenellus_contig7508 6507..6655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7508.2.1prot_C-tenellus_contig7508.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7508 4811..6655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7508.2.1

>prot_C-tenellus_contig7508.2.1 ID=prot_C-tenellus_contig7508.2.1|Name=mRNA_C-tenellus_contig7508.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=103bp
MVDWEGEGKVMPDFGKLERVQGDSDLPVWAARQKKVFTNWINNKASVRRE
GCAMELFSDLQDGVVLFSLLEVLSKQSLAVLGKVKPERNKIKKIANMNIV
WK*
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mRNA from alignment at C-tenellus_contig7508:4811..6655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7508.2.1 ID=mRNA_C-tenellus_contig7508.2.1|Name=mRNA_C-tenellus_contig7508.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1845bp|location=Sequence derived from alignment at C-tenellus_contig7508:4811..6655+ (Choristocarpus tenellus KU2346)
ATGGTGGACTGGGAAGGGGAGGGGAAGGTCATGCCCGACTTCGGGAAGCT
TGAAAGGGTGCAGGGTGACAGTGACCTTCCAGTTTGGGCTGCTCGCCAGA
AGAAAGTCTTCACAAACTGGATCAATAACAAGGCAAGTGTAAGGAGAGAG
GGTTGTGCGAGTATCCATGTGTTAAATGTAAGTTGAAAAAGACCTTCAAC
CCAACATGTAGCTCACCACAACGTGAGCAAGGTCGATGAGCCTGAGAGTG
AGCTTGAGCATGAATCCCAATCAGAACGCAATAATCCCATAGTACAAGTG
TATAGGAGGCACAGGGACCCAAATCAGGCAAAAAAAGGAAGTGGTACAAC
CAAATTGGTAATTGGTTTGCTCAACTGCTAAACGTTTACTTACCAAGCAG
GATGAAAAACTTGGATACGGTGGTGAGGGGGCGGGAGTTGAGGGGGCAAT
TTTCTGTCTAAGTTATTGAAACTCTTCTCCCTTCTGTAATGTGGCAATCA
TGCATAACGTGAGGATCGCGTTTGAGTGATGTTATTCTGTAAGACAAGGG
TTCGCCATCTGTTCCGAGTGATCCTAAATCCTTTTGGTCTGGTTGAATGC
AATTTACGACAGTACCTTTTTTTTTGTTATTATCCCGCACCTGTGCTTTT
AAAGGCACAAGGTGCAATTATGCCAGCAGTCTTCTGTTAACTTCCTCTCC
TGTAATCTCCACTGTTGCAGGTTTTCATAATTTCAGTGCTGTTCCTTTGA
CATTGTTTTTGAAATTTCTATCTGTGTTAGGGAGTGCAGTGAATGAATGA
ATGAATGGAAGTACAAAAAGCAATAATGAAGCACAGTCCGCCTGAAGTAC
CTTGATCCAGACCAAGGGCCTTGATATACGCCATCTCGGTATTCAGCTTT
ACATCATGATGCATATTGTAAGGTTCTTCAGCTGGCAAGGACTTGGTAGG
GACTGTTTAATGATGGTAGTTTTGTTTGTTGGATACTGTAGTGAAGCTGT
GTTTGGTGAATTGCGGGAATCTAGAGGTCAGGTCCTACCTACCTACCTGC
CCGACCCGTTCTTCACAAGTTACCCGAACGATCGCTCTCGTACCTCTCAA
CCTGATTCATCTTTTTGAAGGAGACATTCAAAAATCGACAACGTGTGTAG
TGTAGTTCATCGTTCGAGTTTTTTTCTTTTTTGTTTGTTTGTTTGTTGCT
GTGATGTACCTGCAGGAATTTTCTGAGAATGATCCGGGAAAAAGAATTTT
TGCGTGTAGTGGTATCGTTGCGTGATGTACGTGTTTTGGATCATGCAGCA
CTATCGCACGATGTAGCACCAAAATAGAAGTATATATGTATATATATAGA
GAGAGAGAGAGAGATGCGTGTATATGATAGTATAGGACAACTCCTGCCTG
TTGATTTAATTGATAAACGTACTTCAGATTTTTTTCTTCTTCTCACACCT
TTGAAACATTAAAAAAAAATATTTTTGTAGCACATAGCTGCTTAAGGCTC
GCCCTGCGAAATCGTACCCACGTAAGAAATAATAAAAAATAGATTTAGAA
TATCTCCCCACAGTACCTTCTGTATCTATGTAGGTATGTAGGCGACAATG
CACTATATATATATATATATATGGAGAAAAGCACTTGAGATACGCATATG
CCATTTTTTTTTTTTCACCAGTTGGTCGAGCGGCACCTAGAGGTAGTGGA
ACTGTTCTCAGATCTACAGGATGGGGTTGTCCTCTTTTCCCTCCTTGAAG
TGCTGAGCAAGCAGAGCCTGGCTGTGCTTGGGAAGGTCAAGCCCGAGAGG
AACAAGATCAAGAAGATCGCCAACATGAACATCGTCTGGAAGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7508:4811..6655+

>mRNA_C-tenellus_contig7508.2.1 ID=mRNA_C-tenellus_contig7508.2.1|Name=mRNA_C-tenellus_contig7508.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=309bp|location=Sequence derived from alignment at C-tenellus_contig7508:4811..6655+ (Choristocarpus tenellus KU2346)
ATGGTGGACTGGGAAGGGGAGGGGAAGGTCATGCCCGACTTCGGGAAGCT
TGAAAGGGTGCAGGGTGACAGTGACCTTCCAGTTTGGGCTGCTCGCCAGA
AGAAAGTCTTCACAAACTGGATCAATAACAAGGCAAGTGTAAGGAGAGAG
GGTTGTGCGATGGAACTGTTCTCAGATCTACAGGATGGGGTTGTCCTCTT
TTCCCTCCTTGAAGTGCTGAGCAAGCAGAGCCTGGCTGTGCTTGGGAAGG
TCAAGCCCGAGAGGAACAAGATCAAGAAGATCGCCAACATGAACATCGTC
TGGAAGTGA
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