mRNA_C-tenellus_contig75.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig75.5.1
Unique NamemRNA_C-tenellus_contig75.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig75.5.1 vs. uniprot
Match: A0A8K1CK47_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK47_PYTOL)

HSP 1 Score: 83.6 bits (205), Expect = 5.830e-16
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 3 
Query:  144 SSKRPFNTQSSMSTSPTVPSVHHDQHKGSKSDFGGDVDVEVAIDRSGCSVEYYHLEDCLGENERDWRKCQEEVKTLRLCSEENQK 398
            SSK+ F       T P +P +H     GS+SDFG DVD++  I++ GCS +YY LE+CLGE +RDW KCQ EVK L+ C++  QK
Sbjct:    2 SSKKSF-------TPPVIPGLH----AGSQSDFGSDVDIDEMIEKMGCSKDYYKLEECLGEYDRDWTKCQVEVKALKACNDRLQK 75
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BLAST of mRNA_C-tenellus_contig75.5.1 vs. uniprot
Match: K3X4R7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4R7_GLOUD)

HSP 1 Score: 81.6 bits (200), Expect = 3.470e-15
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 3 
Query:  162 NTQSSMSTSPTVPSVHHDQHKGSKSDFGGDVDVEVAIDRSGCSVEYYHLEDCLGENERDWRKCQEEVKTLRLCSEENQK 398
            N Q +      VP V    H GS+SDFG D+D++  I++ GC+ +YY LE+CLGE +R+W KCQ +VK L+LC++  QK
Sbjct:    9 NAQRAAPAKAFVPPVVPGLHAGSQSDFGDDIDIDAMIEKMGCAQDYYKLEECLGEYDRNWTKCQAQVKQLKLCNDRLQK 87
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BLAST of mRNA_C-tenellus_contig75.5.1 vs. uniprot
Match: A0A662X263_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X263_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.020e-14
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 3 
Query:  177 MSTSPTVPSVHHDQHKGSKSDFGGDVDVEVAIDRSGCSVEYYHLEDCLGENERDWRKCQEEVKTLRLCSE 386
            MS +PT P+     H GSKSDFG D+DV+  I+R+ C  +YY LEDCL + +RDW KCQ++VK L+ C++
Sbjct:    1 MSAAPTAPTPLAGLHAGSKSDFGEDLDVDELIERNRCHKDYYKLEDCLADYDRDWTKCQQQVKQLKQCND 70
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BLAST of mRNA_C-tenellus_contig75.5.1 vs. uniprot
Match: A0A3F2RVE9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVE9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.970e-14
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 3 
Query:  177 MSTSPTVPSVHHDQHKGSKSDFGGDVDVEVAIDRSGCSVEYYHLEDCLGENERDWRKCQEEVKTLRLCSE 386
            MS  P  P      H GSKSDFG D+DV+  I+R+ C  +YY LEDCL + +RDWRKCQE+VK L+ C++
Sbjct:    3 MSGIPKAPVPIAGLHAGSKSDFGEDLDVDELIERNRCHEDYYKLEDCLADYDRDWRKCQEQVKKLKQCND 72
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BLAST of mRNA_C-tenellus_contig75.5.1 vs. uniprot
Match: A0A2D4BMS5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMS5_PYTIN)

HSP 1 Score: 77.4 bits (189), Expect = 1.260e-13
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 3 
Query:  198 PSVHHDQHKGSKSDFGGDVDVEVAIDRSGCSVEYYHLEDCLGENERDWRKCQEEVKTLRLCSE 386
            P+V    H+GSKSDFG D+D++  I++ GCS +YY LE+CLGE +RDW KCQ  VK L++C++
Sbjct:   11 PAVVAGLHQGSKSDFGEDLDIDDMIEKMGCSKDYYALEECLGEYDRDWTKCQTYVKQLKVCND 73
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BLAST of mRNA_C-tenellus_contig75.5.1 vs. uniprot
Match: H3HBJ3_PHYRM (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=H3HBJ3_PHYRM)

HSP 1 Score: 76.6 bits (187), Expect = 1.550e-13
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 3 
Query:  219 HKGSKSDFGGDVDVEVAIDRSGCSVEYYHLEDCLGENERDWRKCQEEVKTLRLCSE 386
            H GSKSDFG D+DV+  I+R+ C  +YY LEDCL + +RDWRKCQE+VK L+ C++
Sbjct:   16 HAGSKSDFGEDLDVDELIERNRCHEDYYKLEDCLADFDRDWRKCQEQVKKLKQCND 71
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BLAST of mRNA_C-tenellus_contig75.5.1 vs. uniprot
Match: A0A484DZF9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZF9_BRELC)

HSP 1 Score: 75.5 bits (184), Expect = 3.240e-13
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 3 
Query:  219 HKGSKSDFGGDVDVEVAIDRSGCSVEYYHLEDCLGENERDWRKCQEEVKTLRLCS 383
            H GSKSDFG ++DVE  I R+ C  EYY+LEDCL +  RDWRKCQ+EVK L+ C+
Sbjct:    6 HAGSKSDFGEELDVEKIIKRNRCHREYYNLEDCLADFNRDWRKCQDEVKKLKQCN 60
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BLAST of mRNA_C-tenellus_contig75.5.1 vs. uniprot
Match: A0A5D6XP60_9STRA (HECT domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP60_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.480e-13
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 3 
Query:  198 PSVHHDQHKGSKSDFGGDVDVEVAIDRSGCSVEYYHLEDCLGENERDWRKCQEEVKTLRLCSEENQKQTRRTS*GMADAT 437
            P V    H GSKSDFG D+D++  I+R GC+ +YY LEDCLGE +RDW KCQ +VK LRLC+E  Q Q ++ +   A AT
Sbjct:  818 PQVVAGLHAGSKSDFGADLDIDDMIERMGCAKDYYKLEDCLGEFDRDWTKCQAQVKQLRLCNERLQ-QLKQAAAAAAAAT 896
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BLAST of mRNA_C-tenellus_contig75.5.1 vs. uniprot
Match: G5AI08_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5AI08_PHYSP)

HSP 1 Score: 75.5 bits (184), Expect = 4.530e-13
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 3 
Query:  219 HKGSKSDFGGDVDVEVAIDRSGCSVEYYHLEDCLGENERDWRKCQEEVKTLRLCSE 386
            H GSKSDFG D+DV+  I+R+ C  +YY LEDCL + +RDW KCQ++VK L+LC++
Sbjct:   16 HAGSKSDFGEDLDVDELIERNRCHEDYYKLEDCLADFDRDWTKCQQQVKQLKLCND 71
[Close]
BLAST of mRNA_C-tenellus_contig75.5.1 vs. uniprot
Match: A0A3M6VQQ0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQQ0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.660e-13
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  189 PTVPSVHHDQHKGSKSDFGGDVDVEVAIDRSGCSVEYYHLEDCLGENERDWRKCQEEVKTLRLCSE 386
            PT P      H GSKSDF  D+DVE  I+R+ C  +YY LE+CL + +RDWRKCQEEVK L+ C++
Sbjct:    6 PTPPVPIPGLHAGSKSDFREDLDVEELIERNRCHEDYYKLEECLADYDRDWRKCQEEVKKLKECND 71
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig75.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1CK47_PYTOL5.830e-1649.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X4R7_GLOUD3.470e-1546.84Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662X263_9STRA1.020e-1451.43Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3F2RVE9_9STRA4.970e-1452.86Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A2D4BMS5_PYTIN1.260e-1353.97Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
H3HBJ3_PHYRM1.550e-1358.93Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A484DZF9_BRELC3.240e-1361.82Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A5D6XP60_9STRA4.480e-1353.75HECT domain-containing protein n=1 Tax=Pythium bra... [more]
G5AI08_PHYSP4.530e-1357.14Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A3M6VQQ0_9STRA4.660e-1354.55Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig75contigC-tenellus_contig75:28930..31353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000013995
Model size2141
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.86e-20
EggNOG OGs2E4K7@1|root,2SBFX@2759|Eukaryota,1MI3S@121069|Pythiales
DescriptionCoiled-coil-helix-coiled-coil-helix domain containing 8. Source PGD
Cds size243
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790039.7985106-UTR-C-tenellus_contig75:28929..306511680790039.7985106-UTR-C-tenellus_contig75:28929..30651Choristocarpus tenellus KU2346UTRC-tenellus_contig75 28930..30651 -
1680790039.832928-UTR-C-tenellus_contig75:31177..313531680790039.832928-UTR-C-tenellus_contig75:31177..31353Choristocarpus tenellus KU2346UTRC-tenellus_contig75 31178..31353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790039.8105369-CDS-C-tenellus_contig75:30651..307111680790039.8105369-CDS-C-tenellus_contig75:30651..30711Choristocarpus tenellus KU2346CDSC-tenellus_contig75 30652..30711 -
1680790039.8211403-CDS-C-tenellus_contig75:30994..311771680790039.8211403-CDS-C-tenellus_contig75:30994..31177Choristocarpus tenellus KU2346CDSC-tenellus_contig75 30995..31177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig75.5.1prot_C-tenellus_contig75.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig75 30652..31177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig75.5.1

>prot_C-tenellus_contig75.5.1 ID=prot_C-tenellus_contig75.5.1|Name=mRNA_C-tenellus_contig75.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=81bp
MSTSPTVPSVHHDQHKGSKSDFGGDVDVEVAIDRSGCSVEYYHLEDCLGE
NERDWRKCQEEVKTLRLCSEENQKQTRRTS*
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mRNA from alignment at C-tenellus_contig75:28930..31353-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig75.5.1 ID=mRNA_C-tenellus_contig75.5.1|Name=mRNA_C-tenellus_contig75.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2424bp|location=Sequence derived from alignment at C-tenellus_contig75:28930..31353- (Choristocarpus tenellus KU2346)
ATTAGTGACCACTCCAAAACAACGCCCACCTCACTTAGGTCACCCCCCTT
TGTGGATACAAGATACTTGAGAAAGAACCTTATGAATGGTTGAGGGAGGA
AAAAAATCGAATCATAGATGTGGTGGAGGCAGTAATCTAACCGTCGTCAA
AAAGACCCTTCAATACCCAGAGTTCCATGTCTACCAGTCCCACCGTACCT
TCTGTTCACCATGATCAACATAAGGGCTCAAAGAGCGACTTCGGAGGAGA
TGTAGATGTTGAGGTCGCTATTGATCGCTCAGGTTGCTCTGTTGAATACT
ACCATCTAGAGGACTGCTTGGGAGAAAATGAACGAGACTGGCGGAAGTGT
CAAGAAGAGGTTGGTTCTTCATGATCGCAGATGGCATTGACCTAGAATAG
CTTGCATTATTGATACATATATAATACATACATATATATATACTAAGGAT
CGAAGAGGCTAGCATATCACCTCCATGATCCCACGACCCTAACATGTCAT
GTTGCGCCCATCGAGGTTAAGTCCATGATCTCACGTTGACCTTCAATAAC
TTTGAATGATTGGTATATCCAAGGTTCAGATAGAACCTTGCGAATTACCT
CCATGATCCACAGCCCTTCCTTCCTGTGTTGCGCACATCCAGGTTAAGAC
ACTACGCCTTTGTAGCGAGGAGAACCAGAAGCAGACACGAAGGACATCTT
GAGGTATGGCAGATGCAACGACAAGCATCGATAATTTGGCATACCCGCAA
ATGCTTTTTTTCGTCACGTACTTCTGCACAGCTGGAGCTTGTTGCCAACC
CCCCTGGTATTCCGGCGTACTCGAAGGGGTGTACCATTAACTATACGAAA
TATGTTTTACAGGAAGTGTGTTCATGGTCACACACGGTTGACAGGTGAGG
CGAGATCAGGCCGTGATTGCCACTCAATCCATGCATTCCTTACCACTGAA
AAAAATGTGTTGTGGTTGGTCCCAATTAGTCACCTAATCTGGGTTAGAGA
TTATGTGGTCTCATCAAATGGTGCGTTTACGCGTAGTCGTTGTTGTCATA
ATCTTGAAGGATGTGCTTCGGTTAATGTACGGCATGACTTTGCACTGGAA
TCCATCCCTATATTGTCTGTTTTCATTGTCATCGTTCTTCTTGGCGAGGG
TCACGTACACCCTCTTCGTCCTGATACTGGCTGAGTTACCGATCTCTTTT
CCCTGGCTTGAGCTTGAGCAGCCTGTTTTGCTAACACCTCCTGCATTGCC
CAAAGCTTCCACCTTACTCTTGGTTTGGGCTTGAACAGCCTGCATTAATG
CAACTTCTGTGTTCGGGAGAGCTATCGCCTGGTTTCTGTCAACCTTAGTT
TGAATGGCCTGTGTACCCTGGGTCCAGGTTATTCCTTGAGAAGAGAGGCT
CTTCTGGAGGGCAGAAGCAGCATTAATTAAGGGAGAACAGTATTAGCATT
GAGGAATGGAGGGAAGGGCTTAATGATACTAATCGAGGGCAGCAGCGCCA
AGGAAGGACAGGAACATGGATTAAGGAGGACAGTTACTTCATTAATGAAG
GTTATGCACTAGCGTGGGCTATGCACAAGATAACGTAGTAGTTAAGAACC
GCTTTTCTCGCCTTGATCCATGTGTAGGTAGGTATTACTAAGATGCCAAT
GTTCTACAGTTCTTGTCTTGAATGTCACGAAAGATTTCAAATTTTGATGT
AGGGTTACCCTGAGAGTGGGAAGTCTGCATGCAGGTTGACCTGCCTCTTT
CTGACCATGTTTAGTGGCAGAGTGCAAAAGAACGTTTGTATTGCTACTCA
TTCTGTTGGTGCAGTGGAACACAATGTTGTCATGAAACTATTTGAGGGGT
ATGGTTACACATGGGCACAGAATTTCCCCTTTGATTCGTAGGACGTTGGT
AGGGCATAAATGTGTGCCGGACAGCTATTTCACTTTCACATTTGTTAGGA
GAAACAGAAGACTTCAAAAAAATGCCAGTACCTCCCAAATCCAATATGAA
AAAATGGGTCTAAGAATGGAGTGTATTTTTCCTCAACTTTTTGATGAGTA
TGTGTTTTTTGTTTCTGCAATTGAAAACTAGAATGAGAATGATTATTTGA
TTTCCATAGTTAAAAATTTAATCCGAAATTTATCTATATTTTGACTCTTG
TCTCCTTCAAGAAATATTTTTTTTGTGACCCTTGAAATATTCTGTGGTTA
TGCAAAAAACTGAGCAAAGTGTTGTTTAAATCTACAAGTTTAAATCTACA
GGTTTAGCCTCTATCTTTGTCGTGAACAGTGTGCTAGGATTCATGTGGAG
CAGGGAATGGTTCTGTTGATGGTTGTTGGGTTAAAGGCAGTACATAGTTC
ATATCACTACAGAGCGATACTTAGCACCCTGTAGCATGAAATTCCTCCTC
TGGTTTTGAGTGTGGATGGAGAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig75:28930..31353-

>mRNA_C-tenellus_contig75.5.1 ID=mRNA_C-tenellus_contig75.5.1|Name=mRNA_C-tenellus_contig75.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=243bp|location=Sequence derived from alignment at C-tenellus_contig75:28930..31353- (Choristocarpus tenellus KU2346)
ATGTCTACCAGTCCCACCGTACCTTCTGTTCACCATGATCAACATAAGGG
CTCAAAGAGCGACTTCGGAGGAGATGTAGATGTTGAGGTCGCTATTGATC
GCTCAGGTTGCTCTGTTGAATACTACCATCTAGAGGACTGCTTGGGAGAA
AATGAACGAGACTGGCGGAAGTGTCAAGAAGAGGTTAAGACACTACGCCT
TTGTAGCGAGGAGAACCAGAAGCAGACACGAAGGACATCTTGA
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