mRNA_C-tenellus_contig7487.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7487.1.1
Unique NamemRNA_C-tenellus_contig7487.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7487.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7487contigC-tenellus_contig7487:401..2163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size299
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790038.8409536-CDS-C-tenellus_contig7487:400..5291680790038.8409536-CDS-C-tenellus_contig7487:400..529Choristocarpus tenellus KU2346CDSC-tenellus_contig7487 401..529 -
1680790038.8505816-CDS-C-tenellus_contig7487:1726..18491680790038.8505816-CDS-C-tenellus_contig7487:1726..1849Choristocarpus tenellus KU2346CDSC-tenellus_contig7487 1727..1849 -
1680790038.8593366-CDS-C-tenellus_contig7487:2118..21631680790038.8593366-CDS-C-tenellus_contig7487:2118..2163Choristocarpus tenellus KU2346CDSC-tenellus_contig7487 2119..2163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7487.1.1prot_C-tenellus_contig7487.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7487 401..2163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7487.1.1

>prot_C-tenellus_contig7487.1.1 ID=prot_C-tenellus_contig7487.1.1|Name=mRNA_C-tenellus_contig7487.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=99bp
VDSEDDGNSFRREQEETIDDIIENNEVVDAFSNPSTTMGGINGRVQTNPI
VKLRSKVYCAAADSHRSILELNPNLVTRRYINQAHTVVRARLVRNGSR*
back to top

mRNA from alignment at C-tenellus_contig7487:401..2163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7487.1.1 ID=mRNA_C-tenellus_contig7487.1.1|Name=mRNA_C-tenellus_contig7487.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1763bp|location=Sequence derived from alignment at C-tenellus_contig7487:401..2163- (Choristocarpus tenellus KU2346)
GTGGACAGTGAGGACGATGGCAATAGTTTCCGGCGTGAACAGGAGGTGAG
GGAAGAACGCACTGCTCAAGGACACCAAGCTAGAGTACAGAGCGGGATTG
GAACTGGGAAAGGGGCAAGGCAGTATCCAACTGCCAGGTGTTTTCAACCT
CGTAGGGCTTAGACTTTACTTCTGAAATGCCAGGCAGCTGTAGTTGCAGG
GTTGACTGCTGTGTGCTTGTGCGCGCGCGCGCGCACGTGTGTGTGTGTTT
AATGACTTGATGCATTAGGTCAAAATTCGAATTCCTAAACCATTTGCTGT
TTCCTTCTTGGCAGGAGACTATTGATGATATCATAGAAAACAACGAAGTT
GTGGACGCCTTTTCCAACCCGTCCACCACCATGGGGGGCATAAATGGAAG
GGTGCAGACCAATCCCATAGTCAAGTTGCGGAGCAAGGTAAGAAGTTGCC
TGAGGTGCTCAAGAAGCGAGCAACAGTCCTGCCAGTGCCATGTTCAACCA
TATGAAGTAAGTAACCCTTTGGCATTGTTTATGAGTGATCAAATCATCAC
CTTCAAATTCACAAAGGCTGAAACTTTAACAGGTTCTGAAGGGAAAGGTG
CAACAAAAGCAAACGCATGCACACACACACACACAACCACATAGGCAGGG
CCCAGCACCTGCATACTTTCACTACAGAGTTGCATTGGTGGTCGTCTCCC
TTACCCTACCGAAGTCTCAATGTATCTGGGGGGGGGTGGCGGCTGTCCAT
TTGACACCCATTTTTTATGTCACGATTTTTGGGTGATTGATTGTAACGTC
AGATGGATAATGTAAGTGCACGTTTCCTGGCTATGACCCAAATGGACACC
CTGGTGTAGACCCCCCCCCCCCCAAGATATTTTGAGCCCGAACACAGGTG
CTTACTTCTCTCTGACTCAAGNNNNNNNNNNTCTCCTAAAAATAACCCAA
GCGGCAACCTACTGAAAGCCCCCCCCCCCCCCCAAGATATTTTGAGCCCG
AACACAGGTGCTTACTTCTCTCTGACTCAAGGCCTTGTAAGGTGGAGAAG
GAATAGTGTCCTGGTGTGCTCCTGTTGGTCCAATCCCTCGCGATTTAGAT
ACAAAATACTTAGCCCATACTCCGAGTGCTTGATATATTTTCTGCCTCTG
AGTCAAAGGGTACGAGAGAGGCATATAGAGTTGCATTTTAAGGATGCTGA
CAAATATGAAAAATAAATTTTAGCATTCTGTAGGGAATTTTCTGAATTGT
ACCGGAAAAATTTCAAACAAGAGAGAAAAAGCGCTCTCAAGTCAAACTTA
GAACTTCATCCATAGAAATATGGGCAAACTGCAAGAGATTGAAGAGTTAA
AATGTAAAATAACCGAAACCTAGGTACCTCTAGTTTACATTGACTTTCTG
CTGTTCTCAACTACAATAACAGCAGCTCAGCAACTGTGGATGTGCTTGCA
CCACTACTTCAGAGATACAGGAGTGCATTTGTTGCTGAAACCTCTTTGAA
AAATTTTGAACTCAGGTTGTCTGCTCTGATTCTAGTGTACCAAAAGCACT
TCAGAAATGGCTACCCTGCTGTCACTAAGCGTAATCCCGTCCCTGCATGT
GTTTACACGGCATCTCTTTTCGTCCAACGAACAGGTATACTGCGCAGCAG
CTGACAGTCACCGCTCCATTCTAGAACTCAATCCCAACTTGGTGACTAGG
CGTTATATCAACCAAGCTCATACTGTTGTGAGGGCCAGGTTAGTGAGAAA
TGGGAGTCGATAA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7487:401..2163-

>mRNA_C-tenellus_contig7487.1.1 ID=mRNA_C-tenellus_contig7487.1.1|Name=mRNA_C-tenellus_contig7487.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=297bp|location=Sequence derived from alignment at C-tenellus_contig7487:401..2163- (Choristocarpus tenellus KU2346)
GTGGACAGTGAGGACGATGGCAATAGTTTCCGGCGTGAACAGGAGGAGAC
TATTGATGATATCATAGAAAACAACGAAGTTGTGGACGCCTTTTCCAACC
CGTCCACCACCATGGGGGGCATAAATGGAAGGGTGCAGACCAATCCCATA
GTCAAGTTGCGGAGCAAGGTATACTGCGCAGCAGCTGACAGTCACCGCTC
CATTCTAGAACTCAATCCCAACTTGGTGACTAGGCGTTATATCAACCAAG
CTCATACTGTTGTGAGGGCCAGGTTAGTGAGAAATGGGAGTCGATAA
back to top