mRNA_C-tenellus_contig7418.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7418.2.1
Unique NamemRNA_C-tenellus_contig7418.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7418.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7418contigC-tenellus_contig7418:935..3768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1055
Hectar predicted targeting categorysignal peptide
Exons2
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790035.4373035-UTR-C-tenellus_contig7418:934..9801680790035.4373035-UTR-C-tenellus_contig7418:934..980Choristocarpus tenellus KU2346UTRC-tenellus_contig7418 935..980 +
1680790035.4733865-UTR-C-tenellus_contig7418:3206..37681680790035.4733865-UTR-C-tenellus_contig7418:3206..3768Choristocarpus tenellus KU2346UTRC-tenellus_contig7418 3207..3768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790035.4492264-CDS-C-tenellus_contig7418:980..13101680790035.4492264-CDS-C-tenellus_contig7418:980..1310Choristocarpus tenellus KU2346CDSC-tenellus_contig7418 981..1310 +
1680790035.4592712-CDS-C-tenellus_contig7418:3089..32061680790035.4592712-CDS-C-tenellus_contig7418:3089..3206Choristocarpus tenellus KU2346CDSC-tenellus_contig7418 3090..3206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7418.2.1prot_C-tenellus_contig7418.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7418 981..3206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7418.2.1

>prot_C-tenellus_contig7418.2.1 ID=prot_C-tenellus_contig7418.2.1|Name=mRNA_C-tenellus_contig7418.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=149bp
MCIYIYIHMYDAGVILHLTLAILAVQCFYPHQQTDPPSLRGLRLCPLKCR
VINLQHDSALEYAQLRPSPLPSLGLGAGQEAELSALYGGVPPPHVRGMEA
LFDRTMETLDGLVSELRSVENRVARLQLEKQCLREVWTPSAGSHVVHK*
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mRNA from alignment at C-tenellus_contig7418:935..3768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7418.2.1 ID=mRNA_C-tenellus_contig7418.2.1|Name=mRNA_C-tenellus_contig7418.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2834bp|location=Sequence derived from alignment at C-tenellus_contig7418:935..3768+ (Choristocarpus tenellus KU2346)
CCAAAAGGTCGCCCAGCTATAGACCCCCCCCCAGATTATTTGAACCATGT
GCATATATATATATATACATATGTATGATGCAGGTGTTATATTACATCTC
ACTCTAGCTATCTTGGCTGTGCAATGCTTCTACCCCCACCAACAAACCGA
CCCTCCATCCTTGCGTGGTTTAAGGCTGTGTCCTCTCAAGTGCCGAGTGA
TTAACCTCCAGCACGACTCAGCTTTGGAGTACGCCCAGCTTCGACCCTCT
CCTTTGCCCTCTCTGGGTTTGGGGGCTGGGCAGGAGGCGGAGCTTTCAGC
GCTGTATGGGGGGGTGCCGCCACCGCACGTACGAGGGATGGAGGCGTTAT
TTGATCGAACTATGGAGACGCTCGATGTGGGTGTATTAGGGTTAGGGTTT
GTTGGGGTTGTGTTCCGTGTGTGTCTCGTAACCCATGTGTGTGAGTGTCC
TATTTGTTAGGGGAGGGGGAGGGGGTGTAAGAGAGACTCTAGTATTATGA
CATATTAGTTGTTTTTTTTCAACGTGTGAAGTGTGTACTTAGGACACCGT
ATGCTTTATGTATGAATATATGTATGTTTGTGTGTGTGTGTGTGTTTGTG
TGTGTGCATGCTTCTTTTTTTTGGCGAAGGGGGGGGGACGACTCTTTGGG
CTTGATAGATAGGCACAGTGGGAAGGAGGGCTCTTGCTGAAAGAAATTGG
AGTTCTCATTTTGTAGGGGGGGTGTTTTAAGAGGAACAGCAGGGAAATGG
ATTGCCTGCATCAATTGAATTGTAACTGTGGATTTGATTTCAACCAATAG
CAGGGATGCTGTCGTACCCTTCCGGGTAAATGTTTATGTGGTAAATGTTT
ATGTGGTTCAATAGCGCTTTTTGAGCTGAAGGCGTTTTGGCGAGCGATCC
ATTTATTGTTTTTGTTTTTAGTGCTAACTGCTCTTTCAAAACAGGTGGGG
TCATAGCGACCCGTCGTTTTGAGTGCCAAAGGTCTCTTGCATGTGTGTTA
AAGAGCTTTTATTTTATGTAACTATTTGGGTAGTGTTTTTCCCGGGGTAG
ATAAGGCGTTTATCGCTCGCTCACAGAAGTAGTTTGTCTAGTAGGGGTTT
TTTGTTGTTGTTGTGATGGGGGTAGATTATACCCTCTTCGATAGGACACG
CCACCCTTGATACTACCAAAACGTATCGGGGACAGGAGGGGTGGAGCTCC
ATCCCTCTCACTTTACACTCTCTTCTTGAAACCAACAGGCGATGCAGGCC
AACTGTGCCTTGATAATGGGTTTGCCTTTTTAAAGTGGGCTTGAGGGCAC
GATCTCCATGGGGTAGGCCGATTTGGTCCATGTTTCTCAGCAGAATCTCG
CGTGCAGTGATGTTTGAAGTAACCATGCTGATACCCAGCAATCTCAGGGG
GTCAGTTGTGTAACTTCATCCAGAACTAGGCTGCTATGTGCAGAACAATG
TGGGCTAGCCTTGCCCGCAAGGTGAAGCACGTCCTCGTATTTCACCAGAA
ATTTTCTGTATCATTCTTCAACGACGTGATGCTCTGGCACTGTAGTGGAA
ACTGGCTCTCTGTGCAACGCATCTCTGCCTGCGTCTTGCCTCTAGTGTGT
GGGTGATTCCCCCTCGAGTACAATACTGATTACACCACTCACTGTTGTTA
ACCAAATAGTTAACAGCGTGAATTGATAGCGATCACTGTTTGCTTTGCAC
AGGTGTCTTAAAAGGGGACTAAGAAAGTTGTTCGTTGGGCGATGGACCAA
TCTGATTGGTTGCTATCGGAGCACACACAAACATTTATTTATTTATTTTT
TAAAACAAAAAGGAAAGTTTTTATTATTATGTTAATTGGTCCCTAACTCT
GTAGCCATTCCTGCCTCCTGTGATAAATCCTGAACATTGTTTCTCATCCG
GTACCGGCTCTATCAACTTCTATCATATTTTCCACTGTGTGTGAGAGATC
ACTATCTTCTTCTAAAGCATCTCTTTGCCTCCCCACTCCGGTGGTGACTT
GTGCCTCTTACATCTTGTTTTATTGACTCTTACTGACCTCGCTAAACAAA
ACATAACAAAGCTGATAGTGTCTCTTGCTGTACCCTCTGCTGTCCATGCG
ATGATGTGATGATGTGATGATGTGTCGCACTTCTTGTTGGTTGCTCACGA
GGCAGGGCCTGGTGTCTGAGCTTAGGAGCGTCGAAAACAGGGTTGCCCGG
CTTCAATTGGAAAAACAATGCCTACGGGAGGTTTGGACGCCTTCCGCTGG
TTCTCATGTAGTTCATAAATGAGTAACTGTCCTCCTCCTCGAATTGGCAG
GGCCGTGAAATACTACGAAGCACCATCATACCTTATTGGTGTCTTACTTA
GTGTTGGGGTATACCCCTTTTTTGTAGTCGTCGTAACACAATAATGGTGT
TTGTACTACTATTACCCCTTAGAGAAATGTCACTACATCGAACTGTAGTG
TGCACAGAACATTTTGCATCATTGTTTGTAGAAGTAATAACGTTTTGTAG
TCAAATATTATGTTATATTTTCTCTTCTTGTTTGTACCGAGAAAATATAA
ACAAGACGTTTCACCTTCTCGACACTTTTTTTTGTGTATCTCCTGAATAA
CGTTATCAGATATCTTCTTTACAGGACAGCAGTAGTAGTGGTAAGTACTC
CACTCTATTCTTCCTATCGAGCATGTAGGTCCCAGTGGTGTATATAGGGA
CTCTGGTATGCAGCGGGGCATCGATTTTCCCTGGAAATCAGATGTTTCCC
CTGAATTAATGTTGAGGGGTCAGCAAGTCGTCAAGACAGTAGGAGTGCTG
GGTCTCCCTACCGAGCCAAATGATAATTTCTACA
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Coding sequence (CDS) from alignment at C-tenellus_contig7418:935..3768+

>mRNA_C-tenellus_contig7418.2.1 ID=mRNA_C-tenellus_contig7418.2.1|Name=mRNA_C-tenellus_contig7418.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=447bp|location=Sequence derived from alignment at C-tenellus_contig7418:935..3768+ (Choristocarpus tenellus KU2346)
ATGTGCATATATATATATATACATATGTATGATGCAGGTGTTATATTACA
TCTCACTCTAGCTATCTTGGCTGTGCAATGCTTCTACCCCCACCAACAAA
CCGACCCTCCATCCTTGCGTGGTTTAAGGCTGTGTCCTCTCAAGTGCCGA
GTGATTAACCTCCAGCACGACTCAGCTTTGGAGTACGCCCAGCTTCGACC
CTCTCCTTTGCCCTCTCTGGGTTTGGGGGCTGGGCAGGAGGCGGAGCTTT
CAGCGCTGTATGGGGGGGTGCCGCCACCGCACGTACGAGGGATGGAGGCG
TTATTTGATCGAACTATGGAGACGCTCGATGGCCTGGTGTCTGAGCTTAG
GAGCGTCGAAAACAGGGTTGCCCGGCTTCAATTGGAAAAACAATGCCTAC
GGGAGGTTTGGACGCCTTCCGCTGGTTCTCATGTAGTTCATAAATGA
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